HEADER DNA 15-APR-92 1D70 TITLE SOLUTION STRUCTURE OF A DNA OCTAMER CONTAINING THE PRIBNOW TITLE 2 BOX VIA RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH TITLE 3 DISTANCE AND TORSION ANGLE CONSTRAINTS DERIVED FROM TWO- TITLE 4 DIMENSIONAL NUCLEAR MAGNETIC RESONANCE SPECTRAL FITTING COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*AP*TP*AP*AP*TP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*AP*TP*TP*AP*TP*AP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES KEYWDS DNA EXPDTA SOLUTION NMR NUMMDL 4 AUTHOR U.SCHMITZ,T.L.JAMES REVDAT 2 24-FEB-09 1D70 1 VERSN REVDAT 1 15-APR-93 1D70 0 JRNL AUTH U.SCHMITZ,I.SETHSON,W.M.EGAN,T.L.JAMES JRNL TITL SOLUTION STRUCTURE OF A DNA OCTAMER CONTAINING THE JRNL TITL 2 PRIBNOW BOX VIA RESTRAINED MOLECULAR DYNAMICS JRNL TITL 3 SIMULATION WITH DISTANCE AND TORSION ANGLE JRNL TITL 4 CONSTRAINTS DERIVED FROM TWO-DIMENSIONAL NUCLEAR JRNL TITL 5 MAGNETIC RESONANCE SPECTRAL FITTING. JRNL REF J.MOL.BIOL. V. 227 510 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1404366 JRNL DOI 10.1016/0022-2836(92)90904-X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D70 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 4 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG A 1 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 DT A 2 C5' - C4' - C3' ANGL. DEV. = 8.2 DEGREES REMARK 500 1 DT A 2 N1 - C1' - C2' ANGL. DEV. = 12.1 DEGREES REMARK 500 1 DT A 2 O4' - C1' - N1 ANGL. DEV. = -7.8 DEGREES REMARK 500 1 DT A 2 C6 - N1 - C2 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DT A 2 C6 - C5 - C7 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DA A 6 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 DT A 7 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 DG A 8 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DC B 9 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DT B 11 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DT B 12 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DT B 12 C6 - C5 - C7 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DA B 13 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DT B 14 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DA B 15 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 DG A 1 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 2 DA A 6 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 DT A 7 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 DT A 7 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 2 DG A 8 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DC B 9 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DT B 11 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 DT B 12 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 DT B 12 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 2 DT B 14 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 DA B 15 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 3 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 3 DA A 6 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 DT A 7 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 3 DT A 7 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 3 DG A 8 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 3 DC B 9 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 DT B 11 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 3 DT B 12 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 DT B 12 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 3 DT B 14 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 DA B 15 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 4 DA A 6 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 DT A 7 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 4 DG A 8 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 4 DC B 9 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 DT B 11 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 DT B 12 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DT A 2 0.15 SIDE_CHAIN REMARK 500 1 DA A 3 0.15 SIDE_CHAIN REMARK 500 1 DA A 5 0.09 SIDE_CHAIN REMARK 500 1 DA B 10 0.10 SIDE_CHAIN REMARK 500 1 DT B 11 0.09 SIDE_CHAIN REMARK 500 2 DT A 2 0.08 SIDE_CHAIN REMARK 500 2 DA A 3 0.08 SIDE_CHAIN REMARK 500 2 DT A 4 0.08 SIDE_CHAIN REMARK 500 2 DA A 5 0.11 SIDE_CHAIN REMARK 500 2 DA B 10 0.09 SIDE_CHAIN REMARK 500 2 DT B 11 0.08 SIDE_CHAIN REMARK 500 2 DA B 13 0.06 SIDE_CHAIN REMARK 500 3 DA A 3 0.07 SIDE_CHAIN REMARK 500 3 DT A 4 0.08 SIDE_CHAIN REMARK 500 3 DA A 5 0.11 SIDE_CHAIN REMARK 500 3 DA B 10 0.09 SIDE_CHAIN REMARK 500 3 DT B 11 0.07 SIDE_CHAIN REMARK 500 4 DA A 3 0.07 SIDE_CHAIN REMARK 500 4 DT A 4 0.07 SIDE_CHAIN REMARK 500 4 DA A 5 0.10 SIDE_CHAIN REMARK 500 4 DA B 10 0.09 SIDE_CHAIN REMARK 500 4 DT B 11 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1D70 A 1 8 PDB 1D70 1D70 1 8 DBREF 1D70 B 9 16 PDB 1D70 1D70 9 16 SEQRES 1 A 8 DG DT DA DT DA DA DT DG SEQRES 1 B 8 DC DA DT DT DA DT DA DC CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL MASTER 151 0 0 0 0 0 0 6 0 0 0 2 END