HEADER DNA 12-AUG-99 1CR3 TITLE SOLUTION CONFORMATION OF THE (+)TRANS-ANTI-BENZO[G]CHRYSENE- TITLE 2 DA ADDUCT OPPOSITE DT IN A DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*CP*AP*CP*TP*TP*CP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: C14 ATOM OF BC-ADDUCT LINKED TO N6 ATOM OF COMPND 6 DA6; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*GP*AP*AP*GP*TP*GP*AP*GP*AP*G)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC: YES; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES KEYWDS DNA DUPLEX, BENZO[G]CHRYSENE ADDUCT, CARCINOGEN ADDUCT EXPDTA SOLUTION NMR NUMMDL 7 AUTHOR A.K.SURI,B.MAO,S.AMIN,N.E.GEACINTOV,D.J.PATEL REVDAT 2 24-FEB-09 1CR3 1 VERSN REVDAT 1 18-FEB-00 1CR3 0 JRNL AUTH A.K.SURI,B.MAO,S.AMIN,N.E.GEACINTOV,D.J.PATEL JRNL TITL SOLUTION CONFORMATION OF THE JRNL TITL 2 (+)-TRANS-ANTI-BENZO[G]CHRYSENE-DA ADDUCT OPPOSITE JRNL TITL 3 DT IN A DNA DUPLEX. JRNL REF J.MOL.BIOL. V. 292 289 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10493876 JRNL DOI 10.1006/JMBI.1999.2974 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE. REMARK 4 REMARK 4 1CR3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-99. REMARK 100 THE RCSB ID CODE IS RCSB009508. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 7 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE REMARK 210 WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM,STRUCTURES WITH REMARK 210 ACCEPTABLE COVALENT GEOMETRY, REMARK 210 STRUCTURES WITH FAVORABLE NON- REMARK 210 BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DT A 4 N1 DT A 4 C2 0.054 REMARK 500 1 DA A 6 C6 DA A 6 N6 0.049 REMARK 500 1 DT A 8 N1 DT A 8 C2 0.055 REMARK 500 1 DT A 9 N1 DT A 9 C2 0.054 REMARK 500 1 DT B 17 N1 DT B 17 C2 0.058 REMARK 500 2 DT A 2 N1 DT A 2 C2 0.049 REMARK 500 2 DT A 4 N1 DT A 4 C2 0.054 REMARK 500 2 DA A 6 C6 DA A 6 N6 0.050 REMARK 500 2 DT A 8 N1 DT A 8 C2 0.054 REMARK 500 2 DT B 17 N1 DT B 17 C2 0.055 REMARK 500 3 DT A 4 N1 DT A 4 C2 0.051 REMARK 500 3 DA A 6 C6 DA A 6 N6 0.049 REMARK 500 3 DT A 8 N1 DT A 8 C2 0.051 REMARK 500 3 DT A 9 N1 DT A 9 C2 0.051 REMARK 500 3 DT B 17 N1 DT B 17 C2 0.059 REMARK 500 4 DT A 4 N1 DT A 4 C2 0.055 REMARK 500 4 DA A 6 C6 DA A 6 N6 0.051 REMARK 500 4 DT A 8 N1 DT A 8 C2 0.052 REMARK 500 4 DT A 9 N1 DT A 9 C2 0.051 REMARK 500 4 DT B 17 N1 DT B 17 C2 0.063 REMARK 500 4 DT B 17 C2 DT B 17 N3 0.053 REMARK 500 5 DT A 4 N1 DT A 4 C2 0.054 REMARK 500 5 DA A 6 C6 DA A 6 N6 0.051 REMARK 500 5 DT A 8 N1 DT A 8 C2 0.052 REMARK 500 5 DT B 17 N1 DT B 17 C2 0.056 REMARK 500 6 DT A 2 N1 DT A 2 C2 0.051 REMARK 500 6 DT A 4 N1 DT A 4 C2 0.051 REMARK 500 6 DT A 8 N1 DT A 8 C2 0.053 REMARK 500 6 DT A 9 N1 DT A 9 C2 0.050 REMARK 500 6 DG B 16 C2 DG B 16 N3 0.052 REMARK 500 6 DG B 16 N9 DG B 16 C4 0.051 REMARK 500 6 DT B 17 N1 DT B 17 C2 0.056 REMARK 500 7 DT A 4 N1 DT A 4 C2 0.059 REMARK 500 7 DT A 4 C2 DT A 4 N3 0.048 REMARK 500 7 DA A 6 C6 DA A 6 N6 0.048 REMARK 500 7 DT A 8 N1 DT A 8 C2 0.054 REMARK 500 7 DT B 17 N1 DT B 17 C2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 1 DC A 3 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DC A 3 N3 - C4 - N4 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DA A 6 C5 - C6 - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 DA A 6 N1 - C6 - N6 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 DC A 7 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 DC A 11 N3 - C4 - N4 ANGL. DEV. = 5.1 DEGREES REMARK 500 1 DG B 12 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 1 DG B 12 N3 - C2 - N2 ANGL. DEV. = 6.2 DEGREES REMARK 500 1 DG B 12 N1 - C6 - O6 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DG B 13 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 DG B 13 N3 - C2 - N2 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 DA B 14 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DA B 14 N1 - C6 - N6 ANGL. DEV. = 7.1 DEGREES REMARK 500 1 DA B 15 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DA B 15 N1 - C6 - N6 ANGL. DEV. = 6.7 DEGREES REMARK 500 1 DG B 16 N3 - C2 - N2 ANGL. DEV. = 6.7 DEGREES REMARK 500 1 DT B 17 C4 - C5 - C7 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DT B 17 C6 - C5 - C7 ANGL. DEV. = -6.3 DEGREES REMARK 500 1 DG B 18 N3 - C2 - N2 ANGL. DEV. = 5.1 DEGREES REMARK 500 1 DA B 19 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA B 19 N1 - C6 - N6 ANGL. DEV. = 6.9 DEGREES REMARK 500 1 DG B 20 N3 - C2 - N2 ANGL. DEV. = 6.6 DEGREES REMARK 500 1 DA B 21 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DA B 21 N1 - C6 - N6 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 DG B 22 N3 - C2 - N2 ANGL. DEV. = 6.3 DEGREES REMARK 500 2 DC A 3 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 DC A 3 N3 - C4 - C5 ANGL. DEV. = -2.4 DEGREES REMARK 500 2 DC A 3 N3 - C4 - N4 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DA A 6 C5 - C6 - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 2 DA A 6 N1 - C6 - N6 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 DT A 8 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 2 DT A 9 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DC A 11 N3 - C4 - N4 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 DG B 12 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 DG B 12 N3 - C2 - N2 ANGL. DEV. = 6.6 DEGREES REMARK 500 2 DG B 12 N1 - C6 - O6 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 DG B 13 N3 - C2 - N2 ANGL. DEV. = 6.1 DEGREES REMARK 500 2 DA B 14 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 2 DA B 14 N1 - C6 - N6 ANGL. DEV. = 6.5 DEGREES REMARK 500 2 DA B 15 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DA B 15 N1 - C6 - N6 ANGL. DEV. = 6.2 DEGREES REMARK 500 2 DG B 16 N3 - C2 - N2 ANGL. DEV. = 6.5 DEGREES REMARK 500 2 DG B 16 N1 - C6 - O6 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DT B 17 C6 - C5 - C7 ANGL. DEV. = -5.6 DEGREES REMARK 500 2 DG B 18 N3 - C2 - N2 ANGL. DEV. = 5.8 DEGREES REMARK 500 2 DG B 18 N1 - C6 - O6 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DA B 19 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DA B 19 N1 - C6 - N6 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 206 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BC A 23 DBREF 1CR3 A 1 11 PDB 1CR3 1CR3 1 11 DBREF 1CR3 B 12 22 PDB 1CR3 1CR3 12 22 SEQRES 1 A 11 DC DT DC DT DC DA DC DT DT DC DC SEQRES 1 B 11 DG DG DA DA DG DT DG DA DG DA DG MODRES 1CR3 DA A 6 DA ADUCT FORMATION HET BC A 23 42 HETNAM BC BENZO[G]CHRYSENE FORMUL 3 BC C22 H18 O3 LINK C14 BC A 23 N6 DA A 6 1555 1555 1.54 SITE 1 AC1 4 DC A 5 DA A 6 DT B 17 DG B 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 ORIGX2 0.000000 1.000000 0.000000 ORIGX3 0.000000 0.000000 1.000000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 181 0 1 0 0 0 1 6 0 0 0 2 END