HEADER RIBOSOME 11-AUG-99 1CQU TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIBOSOMAL TITLE 2 PROTEIN L9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422 KEYWDS PROTEIN L9, NMR, RIBOSOME EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR Y.HUA,B.KUHLMAN,D.HOFFMAN,D.P.RALEIGH REVDAT 2 24-FEB-09 1CQU 1 VERSN REVDAT 1 27-APR-02 1CQU 0 JRNL AUTH D.L.LUISI,B.KUHLMAN,K.SIDERAS,P.A.EVANS,D.P.RALEIGH JRNL TITL EFFECTS OF VARYING THE LOCAL PROPENSITY TO FORM JRNL TITL 2 SECONDARY STRUCTURE ON THE STABILITY AND FOLDING JRNL TITL 3 KINETICS OF A RAPID FOLDING MIXED ALPHA/BETA JRNL TITL 4 PROTEIN: CHARACTERIZATION OF A TRUNCATION MUTANT JRNL TITL 5 OF THE N-TERMINAL DOMAIN OF THE RIBOSOMAL PROTEIN JRNL TITL 6 L9. JRNL REF J.MOL.BIOL. V. 289 167 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10339414 JRNL DOI 10.1006/JMBI.1999.2742 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.W.HOFFMAN,C.CAMERON,C.DAVIES,S.E.GERCHMAN, REMARK 1 AUTH 2 J.H.KYCIA,S.PORTER,V.RAMAKRISHNAN,S.W.WHITE REMARK 1 TITL CRYSTAL STRUCTURE OF PROKARYOTIC RIBOSOMAL PROTEIN REMARK 1 TITL 2 L9: A BI-LOBED RNA-BINDING PROTEIN REMARK 1 REF EUR.J.BIOCHEM. V. 13 205 1994 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.81 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CQU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-99. REMARK 100 THE RCSB ID CODE IS RCSB009499. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.81 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 151.25 -49.66 REMARK 500 1 VAL A 9 -142.15 -123.24 REMARK 500 1 LYS A 15 137.28 -32.85 REMARK 500 1 VAL A 21 -143.39 -86.94 REMARK 500 1 ASP A 23 -31.16 -31.61 REMARK 500 1 ALA A 26 -61.52 -29.78 REMARK 500 1 PHE A 29 -52.68 -160.96 REMARK 500 1 GLN A 33 -93.20 -133.22 REMARK 500 1 GLU A 38 108.73 -56.17 REMARK 500 1 LYS A 53 -100.58 -131.66 REMARK 500 2 LYS A 2 152.12 -49.23 REMARK 500 2 VAL A 9 -155.42 -97.32 REMARK 500 2 LYS A 19 -125.88 -161.83 REMARK 500 2 VAL A 21 -147.01 -86.78 REMARK 500 2 ASP A 23 -31.63 -31.36 REMARK 500 2 PHE A 29 -47.07 -161.32 REMARK 500 2 GLN A 33 -100.87 -107.94 REMARK 500 2 ALA A 39 95.33 -54.39 REMARK 500 2 GLU A 54 -83.80 -145.23 REMARK 500 2 GLN A 55 24.84 -159.98 REMARK 500 3 LYS A 2 156.70 -49.45 REMARK 500 3 VAL A 9 -146.45 -116.12 REMARK 500 3 LYS A 12 -70.67 -120.30 REMARK 500 3 LYS A 19 -124.27 -161.68 REMARK 500 3 VAL A 21 -140.64 -86.36 REMARK 500 3 ASP A 23 -34.22 -29.46 REMARK 500 3 ALA A 26 -58.26 -28.75 REMARK 500 3 PHE A 29 -46.86 -151.61 REMARK 500 3 GLU A 38 108.83 -51.04 REMARK 500 3 ALA A 39 100.22 -49.33 REMARK 500 3 GLN A 52 104.19 -48.32 REMARK 500 3 LYS A 53 41.10 -85.80 REMARK 500 4 LYS A 12 -41.69 -137.74 REMARK 500 4 LYS A 19 -127.53 -161.17 REMARK 500 4 VAL A 21 -146.57 -87.48 REMARK 500 4 ASP A 23 -32.28 -30.65 REMARK 500 4 ALA A 26 -60.23 -29.39 REMARK 500 4 PHE A 29 -52.83 -160.65 REMARK 500 4 GLU A 38 113.83 -38.65 REMARK 500 4 ALA A 39 99.24 -48.58 REMARK 500 4 GLN A 52 -78.30 -73.01 REMARK 500 4 LYS A 53 89.84 -58.16 REMARK 500 5 LYS A 7 -152.52 -95.72 REMARK 500 5 LYS A 10 70.12 -64.72 REMARK 500 5 LYS A 12 -87.06 -151.15 REMARK 500 5 LYS A 15 121.32 -28.70 REMARK 500 5 LYS A 19 -127.87 -161.54 REMARK 500 5 VAL A 21 -149.29 -87.55 REMARK 500 5 ASP A 23 -31.53 -30.59 REMARK 500 5 PHE A 29 -52.88 -160.56 REMARK 500 5 LYS A 32 0.28 -69.95 REMARK 500 5 GLU A 38 105.06 -55.11 REMARK 500 5 ALA A 39 89.79 -54.17 REMARK 500 5 ALA A 42 -35.13 -36.10 REMARK 500 5 LYS A 53 -72.36 -53.45 REMARK 500 6 VAL A 9 -157.81 -130.92 REMARK 500 6 LYS A 15 134.43 -37.95 REMARK 500 6 LYS A 19 -126.37 -160.97 REMARK 500 6 VAL A 21 -143.89 -87.23 REMARK 500 6 ASP A 23 -30.52 -31.42 REMARK 500 6 ALA A 26 -60.60 -28.69 REMARK 500 6 ASN A 27 34.03 -89.30 REMARK 500 6 PHE A 29 -46.42 -160.69 REMARK 500 6 GLN A 33 -114.31 -127.97 REMARK 500 6 GLU A 38 108.94 -37.05 REMARK 500 6 ALA A 39 97.85 -55.97 REMARK 500 6 GLN A 55 -31.36 -137.28 REMARK 500 7 LYS A 7 -163.75 -118.65 REMARK 500 7 VAL A 9 -162.74 -124.89 REMARK 500 7 LYS A 10 83.05 -65.74 REMARK 500 7 LYS A 12 -67.61 -108.54 REMARK 500 7 VAL A 21 -144.56 -87.14 REMARK 500 7 ASP A 23 -31.20 -31.51 REMARK 500 7 PHE A 29 -46.78 -161.17 REMARK 500 7 GLN A 33 -92.89 -114.57 REMARK 500 7 ALA A 39 83.85 -59.21 REMARK 500 7 ALA A 42 -30.15 -36.52 REMARK 500 7 ASN A 43 -60.65 -93.71 REMARK 500 7 GLN A 55 -41.04 -147.83 REMARK 500 8 LYS A 10 82.93 -56.24 REMARK 500 8 LYS A 12 -61.44 -142.99 REMARK 500 8 VAL A 21 -150.20 -87.25 REMARK 500 8 ASP A 23 -32.24 -30.86 REMARK 500 8 ALA A 26 -57.41 -29.25 REMARK 500 8 PHE A 29 -99.58 -160.31 REMARK 500 8 LEU A 30 -42.48 -29.81 REMARK 500 8 ALA A 39 99.91 -54.40 REMARK 500 8 GLN A 52 -174.35 -53.40 REMARK 500 8 GLN A 55 22.84 -159.96 REMARK 500 9 LYS A 7 -165.75 -117.76 REMARK 500 9 VAL A 9 -154.98 -99.66 REMARK 500 9 LYS A 12 -67.80 -126.45 REMARK 500 9 LYS A 19 -127.09 -160.99 REMARK 500 9 VAL A 21 -141.37 -87.02 REMARK 500 9 ASP A 23 -32.31 -31.16 REMARK 500 9 ALA A 26 -64.08 -29.44 REMARK 500 9 ASN A 27 33.54 -89.75 REMARK 500 9 PHE A 29 -49.48 -160.73 REMARK 500 9 GLN A 33 -111.16 -123.90 REMARK 500 9 ALA A 39 97.17 -51.31 REMARK 500 9 GLU A 54 -51.01 -145.48 REMARK 500 9 GLN A 55 48.89 -160.15 REMARK 500 10 VAL A 9 -143.96 -125.72 REMARK 500 10 LYS A 12 -75.71 -146.06 REMARK 500 10 LYS A 19 -128.96 -161.00 REMARK 500 10 VAL A 21 -146.53 -87.51 REMARK 500 10 ASP A 23 -29.88 -32.24 REMARK 500 10 ALA A 26 -60.39 -29.39 REMARK 500 10 PHE A 29 -58.59 -161.24 REMARK 500 10 GLU A 38 107.17 -59.66 REMARK 500 10 ALA A 39 96.88 -63.64 REMARK 500 10 LEU A 47 -27.73 -38.84 REMARK 500 10 GLU A 54 -80.56 -158.80 REMARK 500 11 LYS A 7 -163.39 -115.31 REMARK 500 11 VAL A 9 -158.74 -121.18 REMARK 500 11 VAL A 21 -144.49 -87.54 REMARK 500 11 ASP A 23 -30.54 -33.57 REMARK 500 11 ALA A 26 -59.21 -29.01 REMARK 500 11 PHE A 29 -77.51 -160.71 REMARK 500 11 ALA A 39 107.07 -49.53 REMARK 500 11 GLN A 52 -149.43 -66.33 REMARK 500 11 LYS A 53 -171.08 -57.93 REMARK 500 11 GLN A 55 27.56 -155.97 REMARK 500 12 LYS A 7 -166.16 -115.81 REMARK 500 12 LYS A 12 -25.55 -151.55 REMARK 500 12 LYS A 19 -121.87 -161.79 REMARK 500 12 VAL A 21 -144.79 -86.78 REMARK 500 12 ASP A 23 -33.06 -30.38 REMARK 500 12 PHE A 29 -43.90 -161.01 REMARK 500 12 GLN A 33 -105.70 -113.89 REMARK 500 12 GLU A 38 116.96 -38.85 REMARK 500 12 LYS A 53 71.67 -157.03 REMARK 500 12 GLN A 55 19.37 -140.64 REMARK 500 13 VAL A 9 -157.77 -106.96 REMARK 500 13 LYS A 10 76.33 -61.73 REMARK 500 13 LYS A 12 -83.73 -131.65 REMARK 500 13 LYS A 19 -125.72 -161.54 REMARK 500 13 VAL A 21 -142.32 -87.33 REMARK 500 13 ASP A 23 -31.46 -31.66 REMARK 500 13 PHE A 29 -50.85 -161.33 REMARK 500 13 GLN A 33 -88.60 -114.33 REMARK 500 13 GLU A 38 115.04 -39.49 REMARK 500 13 ALA A 39 102.21 -48.34 REMARK 500 13 LYS A 53 -131.34 -99.74 REMARK 500 13 GLN A 55 73.16 -157.74 REMARK 500 14 LYS A 10 62.81 -67.13 REMARK 500 14 LYS A 19 -127.82 -160.79 REMARK 500 14 VAL A 21 -142.66 -86.89 REMARK 500 14 ASP A 23 -37.30 -29.67 REMARK 500 14 ALA A 26 -63.94 -29.97 REMARK 500 14 ASN A 27 35.31 -88.68 REMARK 500 14 PHE A 29 -47.24 -160.74 REMARK 500 14 GLN A 33 -92.13 -116.72 REMARK 500 14 ALA A 39 60.64 -66.99 REMARK 500 14 GLN A 52 -170.69 -61.98 REMARK 500 14 GLN A 55 44.06 -150.64 REMARK 500 15 LYS A 7 -164.58 -121.97 REMARK 500 15 LYS A 10 85.32 -54.09 REMARK 500 15 LYS A 12 -32.83 -146.72 REMARK 500 15 LYS A 19 -130.93 -161.40 REMARK 500 15 VAL A 21 -144.06 -86.88 REMARK 500 15 ASP A 23 -30.33 -32.05 REMARK 500 15 ALA A 26 -64.48 -29.57 REMARK 500 15 ASN A 28 -32.35 -157.94 REMARK 500 15 GLN A 33 -102.22 -118.84 REMARK 500 15 GLU A 38 108.88 -51.06 REMARK 500 15 ALA A 39 96.07 -49.94 REMARK 500 15 GLN A 55 -41.39 -149.26 REMARK 500 16 LYS A 7 -142.86 -108.98 REMARK 500 16 LYS A 12 -18.97 -151.03 REMARK 500 16 LYS A 15 122.03 -29.81 REMARK 500 16 LYS A 19 -129.94 -160.96 REMARK 500 16 VAL A 21 -142.85 -87.07 REMARK 500 16 ASP A 23 -30.13 -32.72 REMARK 500 16 ALA A 26 -58.49 -28.75 REMARK 500 16 PHE A 29 -53.00 -159.93 REMARK 500 16 GLN A 33 -90.06 -106.39 REMARK 500 16 ALA A 39 96.09 -51.76 REMARK 500 16 LEU A 44 -37.77 -39.20 REMARK 500 16 GLN A 52 95.88 -66.91 REMARK 500 16 GLN A 55 35.37 -152.08 REMARK 500 17 LYS A 15 135.06 -34.33 REMARK 500 17 LYS A 19 -130.28 -159.89 REMARK 500 17 VAL A 21 -145.73 -86.62 REMARK 500 17 ASP A 23 -30.48 -30.80 REMARK 500 17 ALA A 26 -63.57 -29.89 REMARK 500 17 PHE A 29 -43.09 -135.68 REMARK 500 17 GLN A 33 -103.08 -124.61 REMARK 500 17 GLU A 38 107.97 -58.28 REMARK 500 17 ALA A 39 93.18 -59.25 REMARK 500 17 GLU A 54 -107.00 -93.11 REMARK 500 17 GLN A 55 19.46 -151.05 REMARK 500 18 LYS A 12 -55.16 -135.35 REMARK 500 18 LYS A 19 -129.98 -161.22 REMARK 500 18 VAL A 21 -146.80 -87.34 REMARK 500 18 ASP A 23 -36.68 -29.34 REMARK 500 18 ALA A 26 -64.34 -29.46 REMARK 500 18 ASN A 28 -31.32 -154.89 REMARK 500 18 PHE A 29 -42.81 -130.69 REMARK 500 18 GLN A 33 -93.78 -120.02 REMARK 500 18 ALA A 39 82.79 -57.20 REMARK 500 18 LYS A 53 -159.97 -102.59 REMARK 500 18 GLU A 54 -70.58 -59.58 REMARK 500 18 GLN A 55 41.52 -144.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 56 0.31 SIDE_CHAIN REMARK 500 2 ARG A 56 0.30 SIDE_CHAIN REMARK 500 3 ARG A 56 0.28 SIDE_CHAIN REMARK 500 4 ARG A 56 0.12 SIDE_CHAIN REMARK 500 6 ARG A 56 0.31 SIDE_CHAIN REMARK 500 7 ARG A 56 0.28 SIDE_CHAIN REMARK 500 8 ARG A 56 0.25 SIDE_CHAIN REMARK 500 9 ARG A 56 0.11 SIDE_CHAIN REMARK 500 10 ARG A 56 0.24 SIDE_CHAIN REMARK 500 11 ARG A 56 0.30 SIDE_CHAIN REMARK 500 12 ARG A 56 0.13 SIDE_CHAIN REMARK 500 13 ARG A 56 0.17 SIDE_CHAIN REMARK 500 14 ARG A 56 0.22 SIDE_CHAIN REMARK 500 15 ARG A 56 0.32 SIDE_CHAIN REMARK 500 16 ARG A 56 0.19 SIDE_CHAIN REMARK 500 17 ARG A 56 0.32 SIDE_CHAIN REMARK 500 18 ARG A 56 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1CQU A 1 56 UNP P02417 RL9_BACST 1 56 SEQRES 1 A 56 MET LYS VAL ILE PHE LEU LYS ASP VAL LYS GLY LYS GLY SEQRES 2 A 56 LYS LYS GLY GLU ILE LYS ASN VAL ALA ASP GLY TYR ALA SEQRES 3 A 56 ASN ASN PHE LEU PHE LYS GLN GLY LEU ALA ILE GLU ALA SEQRES 4 A 56 THR PRO ALA ASN LEU LYS ALA LEU GLU ALA GLN LYS GLN SEQRES 5 A 56 LYS GLU GLN ARG HELIX 1 1 GLY A 24 PHE A 29 1 6 HELIX 2 2 THR A 40 GLN A 50 1 11 SHEET 1 A 3 GLU A 17 ASN A 20 0 SHEET 2 A 3 LYS A 2 PHE A 5 -1 O VAL A 3 N LYS A 19 SHEET 3 A 3 ALA A 36 GLU A 38 -1 O ILE A 37 N ILE A 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 307 0 0 2 3 0 0 6 0 0 0 5 END