HEADER DNA 26-MAY-99 1COC TITLE SOLUTION-STATE STRUCTURE OF A DNA DODECAMER DUPLEX TITLE 2 CONTAINING A CIS-SYN THYMINE CYCLOBUTANE DIMER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*AP*CP*GP*AP*AP*TP*TP*AP*AP*G)- COMPND 3 3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*TP*TP*AP*AP*TP*TP*CP*GP*TP*GP*C)- COMPND 8 3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES KEYWDS DNA STRUCTURE, NMR, UV-PHOTOPRODUCTS, BII BACKBONE EXPDTA SOLUTION NMR AUTHOR K.MCATEER,Y.JING,J.KAO,J.-S.TAYLOR,M.A.KENNEDY REVDAT 3 24-FEB-09 1COC 1 VERSN REVDAT 2 01-APR-03 1COC 1 JRNL REVDAT 1 09-JUN-99 1COC 0 JRNL AUTH K.MCATEER,Y.JING,J.KAO,J.S.TAYLOR,M.A.KENNEDY JRNL TITL SOLUTION-STATE STRUCTURE OF A DNA DODECAMER DUPLEX JRNL TITL 2 CONTAINING A CIS-SYN THYMINE CYCLOBUTANE DIMER, JRNL TITL 3 THE MAJOR UV PHOTOPRODUCT OF DNA. JRNL REF J.MOL.BIOL. V. 282 1013 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9753551 JRNL DOI 10.1006/JMBI.1998.2062 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 3.1 REMARK 3 AUTHORS : BIOSYM/MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JOURNAL CITATION ABOVE. REMARK 4 REMARK 4 1COC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-99. REMARK 100 THE RCSB ID CODE IS RCSB001113. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, DQF-COSY, HELCO, REMARK 210 HETERO-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY PLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, DISCOVER, BIRDER REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: MEAN STRUCTURE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 2 C5' DC A 2 C4' 0.048 REMARK 500 DC A 4 C5' DC A 4 C4' 0.051 REMARK 500 DA A 6 C5' DA A 6 C4' 0.042 REMARK 500 DT A 8 C5' DT A 8 C4' 0.045 REMARK 500 DT A 8 C5 DT A 8 C7 0.054 REMARK 500 DT A 9 C5' DT A 9 C4' 0.054 REMARK 500 DT A 9 C5 DT A 9 C7 0.049 REMARK 500 DC B 1 C5' DC B 1 C4' 0.044 REMARK 500 DT B 2 C5' DT B 2 C4' 0.049 REMARK 500 DT B 2 C5 DT B 2 C7 0.037 REMARK 500 DT B 3 C5' DT B 3 C4' 0.044 REMARK 500 DT B 3 C5 DT B 3 C7 0.039 REMARK 500 DT B 6 C5' DT B 6 C4' 0.046 REMARK 500 DT B 6 C5 DT B 6 C7 0.045 REMARK 500 DT B 7 C5' DT B 7 C4' 0.052 REMARK 500 DT B 7 C5 DT B 7 C7 0.043 REMARK 500 DC B 8 C5' DC B 8 C4' 0.051 REMARK 500 DT B 10 C5' DT B 10 C4' 0.050 REMARK 500 DT B 10 C5 DT B 10 C7 0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC A 4 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC A 4 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG A 5 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 DA A 6 O4' - C1' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DA A 6 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT A 8 O4' - C1' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DA A 10 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA A 11 N9 - C1' - C2' ANGL. DEV. = 11.6 DEGREES REMARK 500 DA A 11 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 12 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA B 4 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DA B 4 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA B 5 N9 - C1' - C2' ANGL. DEV. = 9.5 DEGREES REMARK 500 DA B 5 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA B 5 N7 - C8 - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT B 7 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC B 8 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG B 9 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 9 O4' - C1' - N9 ANGL. DEV. = 7.2 DEGREES REMARK 500 DT B 10 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 11 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 11 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 DC B 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 5 0.06 SIDE_CHAIN REMARK 500 DA A 7 0.06 SIDE_CHAIN REMARK 500 DT A 8 0.09 SIDE_CHAIN REMARK 500 DT A 9 0.08 SIDE_CHAIN REMARK 500 DC B 1 0.10 SIDE_CHAIN REMARK 500 DT B 2 0.08 SIDE_CHAIN REMARK 500 DT B 3 0.06 SIDE_CHAIN REMARK 500 DA B 4 0.05 SIDE_CHAIN REMARK 500 DA B 5 0.07 SIDE_CHAIN REMARK 500 DT B 6 0.08 SIDE_CHAIN REMARK 500 DG B 9 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1COC A 1 12 PDB 1COC 1COC 1 12 DBREF 1COC B 1 12 PDB 1COC 1COC 1 12 SEQRES 1 A 12 DG DC DA DC DG DA DA DT DT DA DA DG SEQRES 1 B 12 DC DT DT DA DA DT DT DC DG DT DG DC CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 153 0 0 0 0 0 0 6 0 0 0 2 END