HEADER REPLICATION 14-SEP-99 1C4O TITLE CRYSTAL STRUCTURE OF THE DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB TITLE 2 FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 ATCC: 27634; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS DNA NUCLEOTIDE EXCISION REPAIR, UVRABC, HELICASE, HYPERTHERMOSTABLE KEYWDS 2 PROTEIN, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR M.MACHIUS,L.HENRY,M.PALNITKAR,J.DEISENHOFER REVDAT 5 29-JUL-20 1C4O 1 COMPND REMARK HETNAM SITE REVDAT 4 04-OCT-17 1C4O 1 REMARK REVDAT 3 13-JUL-11 1C4O 1 VERSN REVDAT 2 24-FEB-09 1C4O 1 VERSN REVDAT 1 26-JUL-00 1C4O 0 JRNL AUTH M.MACHIUS,L.HENRY,M.PALNITKAR,J.DEISENHOFER JRNL TITL CRYSTAL STRUCTURE OF THE DNA NUCLEOTIDE EXCISION REPAIR JRNL TITL 2 ENZYME UVRB FROM THERMUS THERMOPHILUS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 11717 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10518516 JRNL DOI 10.1073/PNAS.96.21.11717 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 156707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2393 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 21504 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 346 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.38000 REMARK 3 B22 (A**2) : 3.38000 REMARK 3 B33 (A**2) : -6.76000 REMARK 3 B12 (A**2) : 1.98000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 64.88 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : MYTOPPAR:BOG.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : MYTOPPAR:BOG.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1000001302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 138 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 176690 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 7.00000 REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : 72.9000 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: CNS 0.5 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 MICROLITERS PROTEIN (14 MG/ML IN 50 REMARK 280 MM TRIS/CL, 1 MM EDTA, 5 MM DTT, 10% (V/ V) GLYCEROL, PH 7.5) REMARK 280 WERE MIXED WITH 4 MICROLITERS RESERVOIR SOLUTION (1.7-1.9 M REMARK 280 LITHIUM SULFATE, 0.1 M MES, 0.5% (W/V) BETA-OCTYLGLUCOSIDE, PH REMARK 280 6.0) AND EQUILIBRATED AGAINST 1 ML OF RESERVOIR SOLUTION AT 293 REMARK 280 K., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.56667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.56667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 158 REMARK 465 GLU A 159 REMARK 465 ARG A 160 REMARK 465 GLY A 161 REMARK 465 LYS A 162 REMARK 465 PRO A 163 REMARK 465 TYR A 164 REMARK 465 PRO A 165 REMARK 465 ARG A 166 REMARK 465 GLU A 167 REMARK 465 VAL A 168 REMARK 465 LEU A 169 REMARK 465 LEU A 170 REMARK 465 GLU A 171 REMARK 465 ARG A 172 REMARK 465 LEU A 173 REMARK 465 LEU A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 176 REMARK 465 GLY A 177 REMARK 465 TYR A 178 REMARK 465 GLN A 179 REMARK 465 ARG A 180 REMARK 465 ASN A 181 REMARK 465 ASP A 182 REMARK 465 ILE A 183 REMARK 465 ASP A 184 REMARK 465 LEU A 185 REMARK 465 SER A 186 REMARK 465 PRO A 187 REMARK 465 GLY A 188 REMARK 465 ARG A 189 REMARK 465 PHE A 190 REMARK 465 ARG A 191 REMARK 465 ALA A 192 REMARK 465 LYS A 193 REMARK 465 GLY A 194 REMARK 465 GLU A 195 REMARK 465 VAL A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 ILE A 199 REMARK 465 PHE A 200 REMARK 465 PRO A 201 REMARK 465 ALA A 202 REMARK 465 TYR A 203 REMARK 465 GLU A 204 REMARK 465 THR A 205 REMARK 465 GLU A 206 REMARK 465 PRO A 207 REMARK 465 ILE A 208 REMARK 465 ARG A 209 REMARK 465 VAL A 210 REMARK 465 GLU A 211 REMARK 465 LEU A 212 REMARK 465 PHE A 213 REMARK 465 GLY A 214 REMARK 465 ASP A 215 REMARK 465 GLU A 216 REMARK 465 VAL A 217 REMARK 465 GLU A 218 REMARK 465 ARG A 219 REMARK 465 ILE A 220 REMARK 465 SER A 221 REMARK 465 GLN A 222 REMARK 465 VAL A 223 REMARK 465 HIS A 224 REMARK 465 PRO A 225 REMARK 465 VAL A 226 REMARK 465 THR A 227 REMARK 465 GLY A 228 REMARK 465 GLU A 229 REMARK 465 ARG A 230 REMARK 465 LEU A 231 REMARK 465 ARG A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 PRO A 235 REMARK 465 ARG A 584 REMARK 465 LYS A 585 REMARK 465 GLU A 586 REMARK 465 VAL A 587 REMARK 465 ARG A 588 REMARK 465 ALA A 589 REMARK 465 VAL A 590 REMARK 465 ILE A 591 REMARK 465 ARG A 592 REMARK 465 PRO A 593 REMARK 465 GLU A 594 REMARK 465 GLY A 595 REMARK 465 TYR A 596 REMARK 465 GLU A 597 REMARK 465 GLU A 598 REMARK 465 ALA A 599 REMARK 465 PRO A 600 REMARK 465 LEU A 601 REMARK 465 GLU A 602 REMARK 465 ALA A 603 REMARK 465 ASP A 604 REMARK 465 LEU A 605 REMARK 465 SER A 606 REMARK 465 GLY A 607 REMARK 465 GLU A 608 REMARK 465 ASP A 609 REMARK 465 LEU A 610 REMARK 465 ARG A 611 REMARK 465 GLU A 612 REMARK 465 ARG A 613 REMARK 465 ILE A 614 REMARK 465 ALA A 615 REMARK 465 GLU A 616 REMARK 465 LEU A 617 REMARK 465 GLU A 618 REMARK 465 LEU A 619 REMARK 465 ALA A 620 REMARK 465 MET A 621 REMARK 465 TRP A 622 REMARK 465 GLN A 623 REMARK 465 ALA A 624 REMARK 465 ALA A 625 REMARK 465 GLU A 626 REMARK 465 ALA A 627 REMARK 465 LEU A 628 REMARK 465 ASP A 629 REMARK 465 PHE A 630 REMARK 465 GLU A 631 REMARK 465 ARG A 632 REMARK 465 ALA A 633 REMARK 465 ALA A 634 REMARK 465 ARG A 635 REMARK 465 LEU A 636 REMARK 465 ARG A 637 REMARK 465 ASP A 638 REMARK 465 GLU A 639 REMARK 465 ILE A 640 REMARK 465 ARG A 641 REMARK 465 ALA A 642 REMARK 465 LEU A 643 REMARK 465 GLU A 644 REMARK 465 ALA A 645 REMARK 465 ARG A 646 REMARK 465 LEU A 647 REMARK 465 GLN A 648 REMARK 465 GLY A 649 REMARK 465 VAL A 650 REMARK 465 ARG A 651 REMARK 465 ALA A 652 REMARK 465 PRO A 653 REMARK 465 GLU A 654 REMARK 465 PRO A 655 REMARK 465 VAL A 656 REMARK 465 PRO A 657 REMARK 465 GLY A 658 REMARK 465 GLY A 659 REMARK 465 ARG A 660 REMARK 465 LYS A 661 REMARK 465 ARG A 662 REMARK 465 LYS A 663 REMARK 465 ARG A 664 REMARK 465 ARG A 665 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 157 CG1 CG2 REMARK 470 VAL A 583 CG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 11 CE NZ REMARK 480 GLU A 76 CG CD OE1 OE2 REMARK 480 GLU A 80 CD OE1 OE2 REMARK 480 GLU A 107 CG CD OE1 OE2 REMARK 480 LYS A 108 CG CD CE NZ REMARK 480 SER A 111 OG REMARK 480 ILE A 112 CD1 REMARK 480 ARG A 149 CD NE CZ NH1 NH2 REMARK 480 ARG A 152 NE CZ NH1 NH2 REMARK 480 SER A 247 OG REMARK 480 GLU A 249 CG CD OE1 OE2 REMARK 480 LEU A 251 CG CD1 CD2 REMARK 480 GLU A 252 CG CD OE1 OE2 REMARK 480 GLU A 253 CD OE1 OE2 REMARK 480 ILE A 254 CG1 CD1 REMARK 480 LYS A 256 CD CE NZ REMARK 480 LYS A 260 CD CE NZ REMARK 480 GLU A 326 CG CD OE1 OE2 REMARK 480 GLU A 379 CD OE1 OE2 REMARK 480 ARG A 451 NE CZ NH1 NH2 REMARK 480 PHE A 477 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLN A 480 CG CD OE1 NE2 REMARK 480 ARG A 484 CD NE CZ NH1 NH2 REMARK 480 GLU A 520 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3524 O HOH A 4009 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 408 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 237 137.82 -178.90 REMARK 500 PRO A 241 158.01 -46.05 REMARK 500 TYR A 245 52.41 -112.60 REMARK 500 LEU A 246 -103.33 -68.15 REMARK 500 SER A 247 40.02 35.19 REMARK 500 GLU A 249 -101.25 31.44 REMARK 500 MET A 295 -4.66 -148.93 REMARK 500 ILE A 497 -61.85 -92.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 1C4O A 2 665 UNP Q56243 UVRB_THET8 2 665 SEQRES 1 A 664 THR PHE ARG TYR ARG GLY PRO SER PRO LYS GLY ASP GLN SEQRES 2 A 664 PRO LYS ALA ILE ALA GLY LEU VAL GLU ALA LEU ARG ASP SEQRES 3 A 664 GLY GLU ARG PHE VAL THR LEU LEU GLY ALA THR GLY THR SEQRES 4 A 664 GLY LYS THR VAL THR MET ALA LYS VAL ILE GLU ALA LEU SEQRES 5 A 664 GLY ARG PRO ALA LEU VAL LEU ALA PRO ASN LYS ILE LEU SEQRES 6 A 664 ALA ALA GLN LEU ALA ALA GLU PHE ARG GLU LEU PHE PRO SEQRES 7 A 664 GLU ASN ALA VAL GLU TYR PHE ILE SER TYR TYR ASP TYR SEQRES 8 A 664 TYR GLN PRO GLU ALA TYR VAL PRO GLY LYS ASP LEU TYR SEQRES 9 A 664 ILE GLU LYS ASP ALA SER ILE ASN PRO GLU ILE GLU ARG SEQRES 10 A 664 LEU ARG HIS SER THR THR ARG SER LEU LEU THR ARG ARG SEQRES 11 A 664 ASP VAL ILE VAL VAL ALA SER VAL SER ALA ILE TYR GLY SEQRES 12 A 664 LEU GLY ASP PRO ARG GLU TYR ARG ALA ARG ASN LEU VAL SEQRES 13 A 664 VAL GLU ARG GLY LYS PRO TYR PRO ARG GLU VAL LEU LEU SEQRES 14 A 664 GLU ARG LEU LEU GLU LEU GLY TYR GLN ARG ASN ASP ILE SEQRES 15 A 664 ASP LEU SER PRO GLY ARG PHE ARG ALA LYS GLY GLU VAL SEQRES 16 A 664 LEU GLU ILE PHE PRO ALA TYR GLU THR GLU PRO ILE ARG SEQRES 17 A 664 VAL GLU LEU PHE GLY ASP GLU VAL GLU ARG ILE SER GLN SEQRES 18 A 664 VAL HIS PRO VAL THR GLY GLU ARG LEU ARG GLU LEU PRO SEQRES 19 A 664 GLY PHE VAL LEU PHE PRO ALA THR HIS TYR LEU SER PRO SEQRES 20 A 664 GLU GLY LEU GLU GLU ILE LEU LYS GLU ILE GLU LYS GLU SEQRES 21 A 664 LEU TRP GLU ARG VAL ARG TYR PHE GLU GLU ARG GLY GLU SEQRES 22 A 664 VAL LEU TYR ALA GLN ARG LEU LYS GLU ARG THR LEU TYR SEQRES 23 A 664 ASP LEU GLU MET LEU ARG VAL MET GLY THR CYS PRO GLY SEQRES 24 A 664 VAL GLU ASN TYR ALA ARG TYR PHE THR GLY LYS ALA PRO SEQRES 25 A 664 GLY GLU PRO PRO TYR THR LEU LEU ASP TYR PHE PRO GLU SEQRES 26 A 664 ASP PHE LEU VAL PHE LEU ASP GLU SER HIS VAL THR VAL SEQRES 27 A 664 PRO GLN LEU GLN GLY MET TYR ARG GLY ASP TYR ALA ARG SEQRES 28 A 664 LYS LYS THR LEU VAL ASP TYR GLY PHE ARG LEU PRO SER SEQRES 29 A 664 ALA LEU ASP ASN ARG PRO LEU ARG PHE GLU GLU PHE LEU SEQRES 30 A 664 GLU ARG VAL SER GLN VAL VAL PHE VAL SER ALA THR PRO SEQRES 31 A 664 GLY PRO PHE GLU LEU ALA HIS SER GLY ARG VAL VAL GLU SEQRES 32 A 664 GLN ILE ILE ARG PRO THR GLY LEU LEU ASP PRO LEU VAL SEQRES 33 A 664 ARG VAL LYS PRO THR GLU ASN GLN ILE LEU ASP LEU MET SEQRES 34 A 664 GLU GLY ILE ARG GLU ARG ALA ALA ARG GLY GLU ARG THR SEQRES 35 A 664 LEU VAL THR VAL LEU THR VAL ARG MET ALA GLU GLU LEU SEQRES 36 A 664 THR SER PHE LEU VAL GLU HIS GLY ILE ARG ALA ARG TYR SEQRES 37 A 664 LEU HIS HIS GLU LEU ASP ALA PHE LYS ARG GLN ALA LEU SEQRES 38 A 664 ILE ARG ASP LEU ARG LEU GLY HIS TYR ASP CYS LEU VAL SEQRES 39 A 664 GLY ILE ASN LEU LEU ARG GLU GLY LEU ASP ILE PRO GLU SEQRES 40 A 664 VAL SER LEU VAL ALA ILE LEU ASP ALA ASP LYS GLU GLY SEQRES 41 A 664 PHE LEU ARG SER GLU ARG SER LEU ILE GLN THR ILE GLY SEQRES 42 A 664 ARG ALA ALA ARG ASN ALA ARG GLY GLU VAL TRP LEU TYR SEQRES 43 A 664 ALA ASP ARG VAL SER GLU ALA MET GLN ARG ALA ILE GLU SEQRES 44 A 664 GLU THR ASN ARG ARG ARG ALA LEU GLN GLU ALA TYR ASN SEQRES 45 A 664 LEU GLU HIS GLY ILE THR PRO GLU THR VAL ARG LYS GLU SEQRES 46 A 664 VAL ARG ALA VAL ILE ARG PRO GLU GLY TYR GLU GLU ALA SEQRES 47 A 664 PRO LEU GLU ALA ASP LEU SER GLY GLU ASP LEU ARG GLU SEQRES 48 A 664 ARG ILE ALA GLU LEU GLU LEU ALA MET TRP GLN ALA ALA SEQRES 49 A 664 GLU ALA LEU ASP PHE GLU ARG ALA ALA ARG LEU ARG ASP SEQRES 50 A 664 GLU ILE ARG ALA LEU GLU ALA ARG LEU GLN GLY VAL ARG SEQRES 51 A 664 ALA PRO GLU PRO VAL PRO GLY GLY ARG LYS ARG LYS ARG SEQRES 52 A 664 ARG HET BOG A9998 20 HET BOG A9999 20 HET SO4 A9001 5 HET SO4 A9002 5 HET SO4 A9003 5 HET SO4 A9004 5 HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM SO4 SULFATE ION FORMUL 2 BOG 2(C14 H28 O6) FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *336(H2 O) HELIX 1 1 GLN A 14 ARG A 26 1 13 HELIX 2 2 LYS A 42 LEU A 53 1 12 HELIX 3 3 LYS A 64 LEU A 77 1 14 HELIX 4 4 TYR A 89 ASP A 91 5 3 HELIX 5 5 PRO A 100 LYS A 102 5 3 HELIX 6 6 PRO A 114 THR A 129 1 16 HELIX 7 7 VAL A 139 ALA A 141 5 3 HELIX 8 8 PRO A 148 ALA A 153 1 6 HELIX 9 9 LEU A 251 ARG A 272 1 22 HELIX 10 10 VAL A 275 MET A 295 1 21 HELIX 11 11 VAL A 301 THR A 309 5 9 HELIX 12 12 LEU A 320 TYR A 323 5 4 HELIX 13 13 SER A 335 ASP A 358 1 24 HELIX 14 14 PRO A 364 ASP A 368 5 5 HELIX 15 15 PHE A 374 ARG A 380 1 7 HELIX 16 16 PRO A 393 HIS A 398 1 6 HELIX 17 17 GLN A 425 ARG A 439 1 15 HELIX 18 18 VAL A 450 HIS A 463 1 14 HELIX 19 19 ALA A 476 ARG A 487 1 12 HELIX 20 20 PHE A 522 ARG A 524 5 3 HELIX 21 21 GLU A 526 ALA A 536 1 11 HELIX 22 22 GLU A 553 HIS A 576 1 24 SHEET 1 A 7 ARG A 401 GLN A 405 0 SHEET 2 A 7 PHE A 31 GLY A 36 1 N THR A 33 O ARG A 401 SHEET 3 A 7 GLN A 383 SER A 388 1 N VAL A 384 O VAL A 32 SHEET 4 A 7 LEU A 329 ASP A 333 1 N VAL A 330 O GLN A 383 SHEET 5 A 7 ALA A 57 ALA A 61 1 N LEU A 58 O LEU A 329 SHEET 6 A 7 VAL A 133 SER A 138 1 N VAL A 135 O ALA A 57 SHEET 7 A 7 ALA A 82 TYR A 85 1 N ALA A 82 O ILE A 134 SHEET 1 B 2 ALA A 97 VAL A 99 0 SHEET 2 B 2 LEU A 104 ILE A 106 -1 N ILE A 106 O ALA A 97 SHEET 1 C 6 LEU A 416 LYS A 420 0 SHEET 2 C 6 GLU A 543 TYR A 547 1 N VAL A 544 O LEU A 416 SHEET 3 C 6 VAL A 509 ILE A 514 1 N VAL A 512 O GLU A 543 SHEET 4 C 6 ARG A 442 THR A 446 1 N ARG A 442 O SER A 510 SHEET 5 C 6 CYS A 493 GLY A 496 1 N LEU A 494 O THR A 443 SHEET 6 C 6 ALA A 467 LEU A 470 1 N ARG A 468 O CYS A 493 CRYST1 134.740 134.740 106.700 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007422 0.004285 0.000000 0.00000 SCALE2 0.000000 0.008570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009372 0.00000 MASTER 489 0 6 22 15 0 0 6 0 0 0 52 END