HEADER HYDROLASE 25-NOV-98 1B1Y TITLE SEVENFOLD MUTANT OF BARLEY BETA-AMYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (BETA-AMYLASE); COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_TAXID: 4513; SOURCE 4 VARIANT: CV. HARUNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: JM 109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB927 KEYWDS HYDROLASE(O-GLYCOSYL), HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MIKAMI,H.J.YOON,N.YOSHIGI REVDAT 5 29-JUL-20 1B1Y 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 25-AUG-09 1B1Y 1 HET REVDAT 3 24-FEB-09 1B1Y 1 VERSN REVDAT 2 22-DEC-99 1B1Y 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 02-DEC-98 1B1Y 0 JRNL AUTH B.MIKAMI,H.J.YOON,N.YOSHIGI JRNL TITL THE CRYSTAL STRUCTURE OF THE SEVENFOLD MUTANT OF BARLEY JRNL TITL 2 BETA-AMYLASE WITH INCREASED THERMOSTABILITY AT 2.5 A JRNL TITL 3 RESOLUTION. JRNL REF J.MOL.BIOL. V. 285 1235 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 9918723 JRNL DOI 10.1006/JMBI.1998.2379 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.YOSHIGI,Y.OKADA,H.MAEBA,H.SAHARA,T.TAMAKI REMARK 1 TITL CONSTRUCTION OF A PLASMID USED FOR THE EXPRESSION OF A REMARK 1 TITL 2 SEVENFOLD-MUTANT BARLEY BETA-AMYLASE WITH INCREASED REMARK 1 TITL 3 THERMOSTABILITY IN ESCHERICHIA COLI AND PROPERTIES OF THE REMARK 1 TITL 4 SEVENFOLD-MUTANT BETA-AMYLASE REMARK 1 REF J.BIOCHEM.(TOKYO) V. 118 562 1995 REMARK 1 REFN ISSN 0021-924X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 79.9 REMARK 3 NUMBER OF REFLECTIONS : 18732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1182 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 119 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.89000 REMARK 3 B22 (A**2) : -2.89000 REMARK 3 B33 (A**2) : 5.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.240 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.77 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.220 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : PARAM1.CHO REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH1.CHO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-98. REMARK 100 THE DEPOSITION ID IS D_1000000158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-96 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CARBON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1BTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HUNGING DROP VAPOR DIFFUSION AGAINST REMARK 280 0.1 M PIPES PH 7.1, 0.1 M MGAC2 AND 14% PEG 6000 WITH A PROTEIN REMARK 280 CONCENTRATION OF 3 MG/ML., VAPOR DIFFUSION - HANGING DROP, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.25500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.05500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.88250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.05500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.62750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.05500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 187.88250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.05500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.62750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 125.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 91 NE2 HIS A 91 CD2 -0.071 REMARK 500 HIS A 125 NE2 HIS A 125 CD2 -0.071 REMARK 500 HIS A 224 NE2 HIS A 224 CD2 -0.068 REMARK 500 HIS A 271 NE2 HIS A 271 CD2 -0.069 REMARK 500 HIS A 306 NE2 HIS A 306 CD2 -0.069 REMARK 500 HIS A 333 NE2 HIS A 333 CD2 -0.077 REMARK 500 HIS A 409 NE2 HIS A 409 CD2 -0.070 REMARK 500 HIS A 440 NE2 HIS A 440 CD2 -0.080 REMARK 500 HIS A 483 NE2 HIS A 483 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TRP A 53 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 53 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 54 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP A 54 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 VAL A 57 CA - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 VAL A 57 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 TRP A 67 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 67 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU A 84 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 TRP A 108 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP A 108 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 108 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR A 121 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 146 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 146 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 LEU A 179 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 TRP A 196 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP A 196 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP A 227 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 227 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TRP A 263 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 263 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 299 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 299 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 300 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP A 300 CB - CG - CD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 TRP A 300 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A 300 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 TYR A 315 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 328 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 345 CA - CB - CG ANGL. DEV. = -15.4 DEGREES REMARK 500 TRP A 369 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 369 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 369 CG - CD2 - CE3 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 370 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 383 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 418 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 418 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 445 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 457 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 457 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 62.79 -117.02 REMARK 500 SER A 22 179.81 -40.06 REMARK 500 VAL A 23 6.73 -69.17 REMARK 500 ASN A 24 50.37 -156.09 REMARK 500 LYS A 29 20.99 -67.11 REMARK 500 VAL A 57 -89.32 -65.07 REMARK 500 GLU A 58 30.31 -67.60 REMARK 500 LYS A 63 14.29 55.08 REMARK 500 MET A 88 82.81 -69.96 REMARK 500 PHE A 90 28.75 -73.66 REMARK 500 ASP A 118 13.36 -67.89 REMARK 500 PHE A 143 64.82 -102.99 REMARK 500 ALA A 182 5.40 58.73 REMARK 500 LEU A 185 99.94 -68.42 REMARK 500 ARG A 186 -176.58 179.76 REMARK 500 CYS A 206 31.37 -143.38 REMARK 500 HIS A 224 64.07 -112.97 REMARK 500 PRO A 230 105.72 -50.31 REMARK 500 LEU A 284 102.96 -49.56 REMARK 500 ALA A 307 -61.32 -29.62 REMARK 500 ALA A 342 -35.82 -37.33 REMARK 500 PRO A 350 129.74 -35.82 REMARK 500 ASN A 442 7.58 56.80 REMARK 500 SER A 463 172.95 -53.42 REMARK 500 PRO A 490 -120.71 -138.39 REMARK 500 MET A 494 -49.56 -137.23 REMARK 500 PRO A 501 135.29 -39.30 REMARK 500 THR A 502 -96.86 -72.88 REMARK 500 CYS A 503 -43.15 -164.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 405 PRO A 406 143.86 REMARK 500 GLY A 500 PRO A 501 -128.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 210 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE NUTRIENT REMARK 630 MOLECULE NAME: BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 BGC A 552 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 REF.2 AND REF.3 DBREF 1B1Y A 5 504 UNP P16098 AMYB_HORVU 5 504 SEQADV 1B1Y MET A 5 UNP P16098 VAL 5 CONFLICT SEQADV 1B1Y LEU A 185 UNP P16098 MET 185 ENGINEERED SEQADV 1B1Y ALA A 295 UNP P16098 SER 295 ENGINEERED SEQADV 1B1Y VAL A 297 UNP P16098 ILE 297 ENGINEERED SEQADV 1B1Y PRO A 350 UNP P16098 SER 350 ENGINEERED SEQADV 1B1Y PRO A 351 UNP P16098 SER 351 ENGINEERED SEQADV 1B1Y ASP A 352 UNP P16098 GLN 352 ENGINEERED SEQADV 1B1Y SER A 376 UNP P16098 ALA 376 ENGINEERED SEQADV 1B1Y ILE A 475 UNP P16098 LEU 475 CONFLICT SEQRES 1 A 500 MET LYS GLY ASN TYR VAL GLN VAL TYR VAL MET LEU PRO SEQRES 2 A 500 LEU ASP ALA VAL SER VAL ASN ASN ARG PHE GLU LYS GLY SEQRES 3 A 500 ASP GLU LEU ARG ALA GLN LEU ARG LYS LEU VAL GLU ALA SEQRES 4 A 500 GLY VAL ASP GLY VAL MET VAL ASP VAL TRP TRP GLY LEU SEQRES 5 A 500 VAL GLU GLY LYS GLY PRO LYS ALA TYR ASP TRP SER ALA SEQRES 6 A 500 TYR LYS GLN LEU PHE GLU LEU VAL GLN LYS ALA GLY LEU SEQRES 7 A 500 LYS LEU GLN ALA ILE MET SER PHE HIS GLN CYS GLY GLY SEQRES 8 A 500 ASN VAL GLY ASP ALA VAL ASN ILE PRO ILE PRO GLN TRP SEQRES 9 A 500 VAL ARG ASP VAL GLY THR ARG ASP PRO ASP ILE PHE TYR SEQRES 10 A 500 THR ASP GLY HIS GLY THR ARG ASN ILE GLU TYR LEU THR SEQRES 11 A 500 LEU GLY VAL ASP ASN GLN PRO LEU PHE HIS GLY ARG SER SEQRES 12 A 500 ALA VAL GLN MET TYR ALA ASP TYR MET THR SER PHE ARG SEQRES 13 A 500 GLU ASN MET LYS ASP PHE LEU ASP ALA GLY VAL ILE VAL SEQRES 14 A 500 ASP ILE GLU VAL GLY LEU GLY PRO ALA GLY GLU LEU ARG SEQRES 15 A 500 TYR PRO SER TYR PRO GLN SER HIS GLY TRP SER PHE PRO SEQRES 16 A 500 GLY ILE GLY GLU PHE ILE CYS TYR ASP LYS TYR LEU GLN SEQRES 17 A 500 ALA ASP PHE LYS ALA ALA ALA ALA ALA VAL GLY HIS PRO SEQRES 18 A 500 GLU TRP GLU PHE PRO ASN ASP ALA GLY GLN TYR ASN ASP SEQRES 19 A 500 THR PRO GLU ARG THR GLN PHE PHE ARG ASP ASN GLY THR SEQRES 20 A 500 TYR LEU SER GLU LYS GLY ARG PHE PHE LEU ALA TRP TYR SEQRES 21 A 500 SER ASN ASN LEU ILE LYS HIS GLY ASP ARG ILE LEU ASP SEQRES 22 A 500 GLU ALA ASN LYS VAL PHE LEU GLY TYR LYS VAL GLN LEU SEQRES 23 A 500 ALA ILE LYS ILE ALA GLY VAL HIS TRP TRP TYR LYS VAL SEQRES 24 A 500 PRO SER HIS ALA ALA GLU LEU THR ALA GLY TYR TYR ASN SEQRES 25 A 500 LEU HIS ASP ARG ASP GLY TYR ARG THR ILE ALA ARG MET SEQRES 26 A 500 LEU LYS ARG HIS ARG ALA SER ILE ASN PHE THR CYS ALA SEQRES 27 A 500 GLU MET ARG ASP SER GLU GLN PRO PRO ASP ALA MET SER SEQRES 28 A 500 ALA PRO GLU GLU LEU VAL GLN GLN VAL LEU SER ALA GLY SEQRES 29 A 500 TRP ARG GLU GLY LEU ASN VAL SER CYS GLU ASN ALA LEU SEQRES 30 A 500 PRO ARG TYR ASP PRO THR ALA TYR ASN THR ILE LEU ARG SEQRES 31 A 500 ASN ALA ARG PRO HIS GLY ILE ASN GLN SER GLY PRO PRO SEQRES 32 A 500 GLU HIS LYS LEU PHE GLY PHE THR TYR LEU ARG LEU SER SEQRES 33 A 500 ASN GLN LEU VAL GLU GLY GLN ASN TYR VAL ASN PHE LYS SEQRES 34 A 500 THR PHE VAL ASP ARG MET HIS ALA ASN LEU PRO ARG ASP SEQRES 35 A 500 PRO TYR VAL ASP PRO MET ALA PRO LEU PRO ARG SER GLY SEQRES 36 A 500 PRO GLU ILE SER ILE GLU MET ILE LEU GLN ALA ALA GLN SEQRES 37 A 500 PRO LYS ILE GLN PRO PHE PRO PHE GLN GLU HIS THR ASP SEQRES 38 A 500 LEU PRO VAL GLY PRO THR GLY GLY MET GLY GLY GLN ALA SEQRES 39 A 500 GLU GLY PRO THR CYS GLY HET BGC B 1 12 HET GLC B 2 11 HET BGC A 552 12 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE FORMUL 2 BGC 2(C6 H12 O6) FORMUL 2 GLC C6 H12 O6 FORMUL 4 HOH *140(H2 O) HELIX 1 1 LYS A 6 ASN A 8 5 3 HELIX 2 2 LYS A 29 GLU A 42 5 14 HELIX 3 3 VAL A 57 LYS A 60 5 4 HELIX 4 4 SER A 68 ALA A 80 1 13 HELIX 5 5 GLN A 107 ARG A 115 1 9 HELIX 6 6 PRO A 117 ILE A 119 5 3 HELIX 7 7 LEU A 135 VAL A 137 5 3 HELIX 8 8 ALA A 148 ALA A 169 1 22 HELIX 9 9 PRO A 181 GLY A 183 5 3 HELIX 10 10 GLN A 192 HIS A 194 5 3 HELIX 11 11 LYS A 209 ALA A 221 1 13 HELIX 12 12 PRO A 240 ARG A 242 5 3 HELIX 13 13 THR A 251 LEU A 253 5 3 HELIX 14 14 GLU A 255 PHE A 283 1 29 HELIX 15 15 ALA A 307 ALA A 312 1 6 HELIX 16 16 ARG A 324 LEU A 330 1 7 HELIX 17 17 ASP A 346 GLU A 348 5 3 HELIX 18 18 PRO A 357 ARG A 370 1 14 HELIX 19 19 PRO A 386 ALA A 396 1 11 HELIX 20 20 GLY A 426 HIS A 440 1 15 HELIX 21 21 ILE A 464 ALA A 470 1 7 SHEET 1 A 8 GLY A 413 TYR A 416 0 SHEET 2 A 8 GLN A 11 MET A 15 1 N GLN A 11 O PHE A 414 SHEET 3 A 8 GLY A 47 TRP A 53 1 N GLY A 47 O VAL A 14 SHEET 4 A 8 LYS A 83 SER A 89 1 N LYS A 83 O VAL A 48 SHEET 5 A 8 ILE A 172 VAL A 177 1 N VAL A 173 O LEU A 84 SHEET 6 A 8 GLN A 289 ILE A 294 1 N GLN A 289 O ILE A 175 SHEET 7 A 8 SER A 336 PHE A 339 1 N SER A 336 O ILE A 292 SHEET 8 A 8 VAL A 375 CYS A 377 1 N SER A 376 O ILE A 337 SHEET 1 B 2 PHE A 120 THR A 122 0 SHEET 2 B 2 ARG A 128 LEU A 133 -1 N TYR A 132 O TYR A 121 LINK O4 BGC B 1 C1 GLC B 2 1555 1555 1.43 CISPEP 1 PHE A 198 PRO A 199 0 9.25 CISPEP 2 LEU A 417 ARG A 418 0 0.16 CISPEP 3 GLN A 472 PRO A 473 0 -11.44 CRYST1 72.110 72.110 250.510 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003992 0.00000 MASTER 411 0 3 21 10 0 0 6 0 0 0 39 END