HEADER LIGASE 16-NOV-98 1B04 TITLE STRUCTURE OF THE ADENYLATION DOMAIN OF AN NAD+ DEPENDENT TITLE 2 LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DNA LIGASE); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ADENYLATION DOMAIN; COMPND 5 EC: 6.5.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: NCA 1503; SOURCE 5 GENE: LIG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 EXPRESSION_SYSTEM_GENE: LIG KEYWDS LIGASE, DNA REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR M.R.SINGLETON,K.HAKANSSON,D.J.TIMSON,D.B.WIGLEY REVDAT 3 24-FEB-09 1B04 1 VERSN REVDAT 2 01-APR-03 1B04 1 JRNL REVDAT 1 22-NOV-99 1B04 0 JRNL AUTH M.R.SINGLETON,K.HAKANSSON,D.J.TIMSON,D.B.WIGLEY JRNL TITL STRUCTURE OF THE ADENYLATION DOMAIN OF AN JRNL TITL 2 NAD+-DEPENDENT DNA LIGASE. JRNL REF STRUCTURE FOLD.DES. V. 7 35 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10368271 JRNL DOI 10.1016/S0969-2126(99)80007-0 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 25982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1301 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.056 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.061 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.027 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.193 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.221 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.282 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.218 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 4.300 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 24.600; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 32.400; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.122 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.600 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.462 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.057 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B04 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-99. REMARK 100 THE RCSB ID CODE IS RCSB008123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.94500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.86000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 169.41750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.86000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.47250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.86000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.86000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 169.41750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.86000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.86000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.47250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.94500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THE PROTEIN MONOMER IS BELIEVED TO BE THE PHYSIOLOGICALLY REMARK 300 ACTIVE SPECIES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 188 REMARK 465 GLU A 189 REMARK 465 GLU A 314 REMARK 465 VAL A 315 REMARK 465 VAL A 316 REMARK 465 THR A 317 REMARK 465 THR A 318 REMARK 465 GLY B 188 REMARK 465 GLU B 189 REMARK 465 GLU B 314 REMARK 465 VAL B 315 REMARK 465 VAL B 316 REMARK 465 THR B 317 REMARK 465 THR B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 91 OD1 ASP A 95 1.93 REMARK 500 OG SER A 235 OD2 ASP A 287 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLU A 36 OG SER B 31 7455 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 313 CB GLU A 313 CG 0.128 REMARK 500 GLU A 313 CG GLU A 313 CD 0.155 REMARK 500 GLU A 313 CD GLU A 313 OE1 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 CD - NE - CZ ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 8 CD - NE - CZ ANGL. DEV. = 25.9 DEGREES REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 9 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 14 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 19 CD - NE - CZ ANGL. DEV. = 47.0 DEGREES REMARK 500 TYR A 24 N - CA - CB ANGL. DEV. = 12.4 DEGREES REMARK 500 TYR A 25 CB - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TYR A 25 CB - CG - CD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 29 CG - CD - NE ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 30 CA - N - CD ANGL. DEV. = -10.7 DEGREES REMARK 500 PRO A 30 CB - CA - C ANGL. DEV. = 19.0 DEGREES REMARK 500 SER A 31 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 ASP A 34 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 ALA A 35 CB - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 ALA A 35 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 39 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LEU A 44 N - CA - CB ANGL. DEV. = 16.5 DEGREES REMARK 500 LEU A 44 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP A 58 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 63 CD - NE - CZ ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 GLU A 70 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 PHE A 72 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 PHE A 72 CB - CG - CD2 ANGL. DEV. = -9.9 DEGREES REMARK 500 PHE A 72 CB - CG - CD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 73 NH1 - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 9.0 DEGREES REMARK 500 LYS A 74 N - CA - CB ANGL. DEV. = 12.8 DEGREES REMARK 500 HIS A 77 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 HIS A 77 C - N - CA ANGL. DEV. = 21.9 DEGREES REMARK 500 ARG A 78 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 GLU A 90 CA - C - O ANGL. DEV. = -15.7 DEGREES REMARK 500 GLU A 90 CA - C - N ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 97 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 98 CD - NE - CZ ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 227 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 19 -70.47 -52.23 REMARK 500 TYR A 24 -71.66 -69.25 REMARK 500 PRO A 30 -144.60 30.86 REMARK 500 SER A 31 22.56 157.14 REMARK 500 VAL A 32 -149.18 -82.62 REMARK 500 PRO A 33 103.18 -35.09 REMARK 500 ALA A 35 -81.74 -42.78 REMARK 500 ASP A 58 51.01 -114.74 REMARK 500 HIS A 77 79.40 -10.99 REMARK 500 ARG A 78 87.23 102.90 REMARK 500 VAL A 79 121.18 75.58 REMARK 500 MET A 81 77.83 -108.82 REMARK 500 GLU A 90 123.74 -39.34 REMARK 500 LYS A 174 -58.62 -22.70 REMARK 500 SER A 176 -50.37 156.58 REMARK 500 LEU A 180 -76.10 -36.02 REMARK 500 LEU A 191 131.00 168.50 REMARK 500 ASP A 225 46.54 33.51 REMARK 500 GLN A 274 1.27 -66.06 REMARK 500 ALA A 299 42.23 35.81 REMARK 500 LYS A 300 -69.60 -151.83 REMARK 500 ALA A 312 47.49 -75.15 REMARK 500 ASP B 2 -97.94 7.16 REMARK 500 VAL B 26 -65.35 -104.34 REMARK 500 ARG B 29 84.89 -157.61 REMARK 500 PRO B 30 -138.55 -36.32 REMARK 500 SER B 31 35.15 136.37 REMARK 500 THR B 56 162.27 -49.01 REMARK 500 LYS B 74 -2.57 111.03 REMARK 500 VAL B 75 138.69 41.66 REMARK 500 ARG B 78 156.94 149.37 REMARK 500 VAL B 79 84.00 45.65 REMARK 500 SER B 83 99.16 -65.26 REMARK 500 ALA B 85 139.80 -31.72 REMARK 500 VAL B 104 -0.56 -141.74 REMARK 500 ARG B 135 -89.41 -127.79 REMARK 500 ALA B 299 -75.92 93.27 REMARK 500 LYS B 300 -13.70 -161.11 REMARK 500 PRO B 302 152.56 -49.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 29 10.28 REMARK 500 GLN A 242 -10.45 REMARK 500 VAL B 32 -10.04 REMARK 500 LEU B 69 10.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 446 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 459 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B 628 DISTANCE = 6.86 ANGSTROMS DBREF 1B04 A 1 318 UNP O87703 DNLJ_BACST 1 318 DBREF 1B04 B 1 318 UNP O87703 DNLJ_BACST 1 318 SEQADV 1B04 ALA A 114 UNP O87703 LYS 114 ENGINEERED SEQADV 1B04 ALA B 114 UNP O87703 LYS 114 ENGINEERED SEQRES 1 A 318 MET ASP ARG GLN GLN ALA GLU ARG ARG ALA ALA GLU LEU SEQRES 2 A 318 ARG GLU LEU LEU ASN ARG TYR GLY TYR GLU TYR TYR VAL SEQRES 3 A 318 LEU ASP ARG PRO SER VAL PRO ASP ALA GLU TYR ASP ARG SEQRES 4 A 318 LEU MET GLN GLU LEU ILE ALA ILE GLU GLU GLN TYR PRO SEQRES 5 A 318 GLU LEU LYS THR SER ASP SER PRO THR GLN ARG ILE GLY SEQRES 6 A 318 GLY PRO PRO LEU GLU ALA PHE ARG LYS VAL ALA HIS ARG SEQRES 7 A 318 VAL PRO MET MET SER LEU ALA ASN ALA PHE GLY GLU GLY SEQRES 8 A 318 ASP LEU ARG ASP PHE ASP ARG ARG VAL ARG GLN GLU VAL SEQRES 9 A 318 GLY GLU ALA ALA TYR VAL CYS GLU LEU ALA ILE ASP GLY SEQRES 10 A 318 LEU ALA VAL SER VAL ARG TYR GLU ASP GLY TYR PHE VAL SEQRES 11 A 318 GLN GLY ALA THR ARG GLY ASP GLY THR THR GLY GLU ASP SEQRES 12 A 318 ILE THR GLU ASN LEU LYS THR ILE ARG SER LEU PRO LEU SEQRES 13 A 318 ARG LEU LYS GLU PRO VAL SER LEU GLU ALA ARG GLY GLU SEQRES 14 A 318 ALA PHE MET PRO LYS ALA SER PHE LEU ARG LEU ASN GLU SEQRES 15 A 318 GLU ARG LYS ALA ARG GLY GLU GLU LEU PHE ALA ASN PRO SEQRES 16 A 318 ARG ASN ALA ALA ALA GLY SER LEU ARG GLN LEU ASP PRO SEQRES 17 A 318 LYS VAL ALA ALA SER ARG GLN LEU ASP LEU PHE VAL TYR SEQRES 18 A 318 GLY LEU ALA ASP ALA GLU ALA LEU GLY ILE ALA SER HIS SEQRES 19 A 318 SER GLU ALA LEU ASP TYR LEU GLN ALA LEU GLY PHE LYS SEQRES 20 A 318 VAL ASN PRO GLU ARG ARG ARG CYS ALA ASN ILE ASP GLU SEQRES 21 A 318 VAL ILE ALA PHE VAL SER GLU TRP HIS ASP LYS ARG PRO SEQRES 22 A 318 GLN LEU PRO TYR GLU ILE ASP GLY ILE VAL ILE LYS VAL SEQRES 23 A 318 ASP SER PHE ALA GLN GLN ARG ALA LEU GLY ALA THR ALA SEQRES 24 A 318 LYS SER PRO ARG TRP ALA ILE ALA TYR LYS PHE PRO ALA SEQRES 25 A 318 GLU GLU VAL VAL THR THR SEQRES 1 B 318 MET ASP ARG GLN GLN ALA GLU ARG ARG ALA ALA GLU LEU SEQRES 2 B 318 ARG GLU LEU LEU ASN ARG TYR GLY TYR GLU TYR TYR VAL SEQRES 3 B 318 LEU ASP ARG PRO SER VAL PRO ASP ALA GLU TYR ASP ARG SEQRES 4 B 318 LEU MET GLN GLU LEU ILE ALA ILE GLU GLU GLN TYR PRO SEQRES 5 B 318 GLU LEU LYS THR SER ASP SER PRO THR GLN ARG ILE GLY SEQRES 6 B 318 GLY PRO PRO LEU GLU ALA PHE ARG LYS VAL ALA HIS ARG SEQRES 7 B 318 VAL PRO MET MET SER LEU ALA ASN ALA PHE GLY GLU GLY SEQRES 8 B 318 ASP LEU ARG ASP PHE ASP ARG ARG VAL ARG GLN GLU VAL SEQRES 9 B 318 GLY GLU ALA ALA TYR VAL CYS GLU LEU ALA ILE ASP GLY SEQRES 10 B 318 LEU ALA VAL SER VAL ARG TYR GLU ASP GLY TYR PHE VAL SEQRES 11 B 318 GLN GLY ALA THR ARG GLY ASP GLY THR THR GLY GLU ASP SEQRES 12 B 318 ILE THR GLU ASN LEU LYS THR ILE ARG SER LEU PRO LEU SEQRES 13 B 318 ARG LEU LYS GLU PRO VAL SER LEU GLU ALA ARG GLY GLU SEQRES 14 B 318 ALA PHE MET PRO LYS ALA SER PHE LEU ARG LEU ASN GLU SEQRES 15 B 318 GLU ARG LYS ALA ARG GLY GLU GLU LEU PHE ALA ASN PRO SEQRES 16 B 318 ARG ASN ALA ALA ALA GLY SER LEU ARG GLN LEU ASP PRO SEQRES 17 B 318 LYS VAL ALA ALA SER ARG GLN LEU ASP LEU PHE VAL TYR SEQRES 18 B 318 GLY LEU ALA ASP ALA GLU ALA LEU GLY ILE ALA SER HIS SEQRES 19 B 318 SER GLU ALA LEU ASP TYR LEU GLN ALA LEU GLY PHE LYS SEQRES 20 B 318 VAL ASN PRO GLU ARG ARG ARG CYS ALA ASN ILE ASP GLU SEQRES 21 B 318 VAL ILE ALA PHE VAL SER GLU TRP HIS ASP LYS ARG PRO SEQRES 22 B 318 GLN LEU PRO TYR GLU ILE ASP GLY ILE VAL ILE LYS VAL SEQRES 23 B 318 ASP SER PHE ALA GLN GLN ARG ALA LEU GLY ALA THR ALA SEQRES 24 B 318 LYS SER PRO ARG TRP ALA ILE ALA TYR LYS PHE PRO ALA SEQRES 25 B 318 GLU GLU VAL VAL THR THR FORMUL 3 HOH *190(H2 O) HELIX 1 1 ARG A 3 TYR A 25 1 23 HELIX 2 2 ALA A 35 GLN A 50 1 16 HELIX 3 3 PRO A 52 LEU A 54 5 3 HELIX 4 4 PRO A 60 ARG A 63 5 4 HELIX 5 5 ASP A 92 VAL A 104 1 13 HELIX 6 6 THR A 145 THR A 150 1 6 HELIX 7 7 LYS A 174 ALA A 186 1 13 HELIX 8 8 PRO A 195 ARG A 204 1 10 HELIX 9 9 PRO A 208 ARG A 214 1 7 HELIX 10 10 HIS A 234 LEU A 244 1 11 HELIX 11 11 ILE A 258 LYS A 271 1 14 HELIX 12 12 PHE A 289 LEU A 295 1 7 HELIX 13 13 ASP B 2 TYR B 25 5 24 HELIX 14 14 ASP B 34 GLN B 50 1 17 HELIX 15 15 PRO B 52 LEU B 54 5 3 HELIX 16 16 PRO B 60 ILE B 64 5 5 HELIX 17 17 GLU B 90 VAL B 104 1 15 HELIX 18 18 THR B 145 THR B 150 1 6 HELIX 19 19 LYS B 174 ARG B 187 1 14 HELIX 20 20 PRO B 195 ARG B 204 1 10 HELIX 21 21 PRO B 208 SER B 213 1 6 HELIX 22 22 HIS B 234 LEU B 244 1 11 HELIX 23 23 ILE B 258 GLN B 274 1 17 HELIX 24 24 PHE B 289 LEU B 295 1 7 SHEET 1 A 4 ARG A 253 CYS A 255 0 SHEET 2 A 4 TYR A 109 ILE A 115 -1 N CYS A 111 O ARG A 253 SHEET 3 A 4 ILE A 279 VAL A 286 -1 N LYS A 285 O VAL A 110 SHEET 4 A 4 ALA A 305 LYS A 309 -1 N TYR A 308 O ILE A 282 SHEET 1 B 4 TYR A 128 THR A 134 0 SHEET 2 B 4 LEU A 118 GLU A 125 -1 N GLU A 125 O TYR A 128 SHEET 3 B 4 LEU A 164 MET A 172 -1 N ALA A 170 O LEU A 118 SHEET 4 B 4 LEU A 216 LEU A 223 -1 N GLY A 222 O ARG A 167 SHEET 1 C 4 ARG B 253 CYS B 255 0 SHEET 2 C 4 TYR B 109 ILE B 115 -1 N CYS B 111 O ARG B 253 SHEET 3 C 4 ILE B 279 VAL B 286 -1 N LYS B 285 O VAL B 110 SHEET 4 C 4 ALA B 305 LYS B 309 -1 N TYR B 308 O ILE B 282 SHEET 1 D 4 TYR B 128 THR B 134 0 SHEET 2 D 4 LEU B 118 GLU B 125 -1 N GLU B 125 O TYR B 128 SHEET 3 D 4 LEU B 164 MET B 172 -1 N ALA B 170 O LEU B 118 SHEET 4 D 4 LEU B 216 LEU B 223 -1 N GLY B 222 O ARG B 167 CRYST1 95.720 95.720 225.890 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004427 0.00000 MASTER 444 0 0 24 16 0 0 6 0 0 0 50 END