HEADER ELECTRON TRANSPORT 04-NOV-97 1AYG TITLE SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-552; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: C-TYPE CYTOCHROME (REDUCED FORM) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 940; SOURCE 4 STRAIN: TK-6; SOURCE 5 CELLULAR_LOCATION: PERIPLASM KEYWDS CYTOCHROME C, ELECTRON TRANSPORT, PORPHYRIN, FERROUS IRON EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.HASEGAWA,T.YOSHIDA,T.YAMAZAKI,Y.SAMBONGI,Y.YU,Y.IGARASHI, AUTHOR 2 T.KODAMA,K.YAMAZAKI,H.HAKUSUI,Y.KYOGOKU,Y.KOBAYASHI REVDAT 3 24-FEB-09 1AYG 1 VERSN REVDAT 2 13-JAN-99 1AYG 1 HET SOURCE REMARK TITLE REVDAT 2 2 1 HEADER REVDAT 1 25-NOV-98 1AYG 0 JRNL AUTH J.HASEGAWA,T.YOSHIDA,T.YAMAZAKI,Y.SAMBONGI,Y.YU, JRNL AUTH 2 Y.IGARASHI,T.KODAMA,K.YAMAZAKI,Y.KYOGOKU, JRNL AUTH 3 Y.KOBAYASHI JRNL TITL SOLUTION STRUCTURE OF THERMOSTABLE CYTOCHROME JRNL TITL 2 C-552 FROM HYDROGENOBACTER THERMOPHILUS DETERMINED JRNL TITL 3 BY 1H-NMR SPECTROSCOPY. JRNL REF BIOCHEMISTRY V. 37 9641 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9657676 JRNL DOI 10.1021/BI9803067 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING REFINEMENT FOR REMARK 3 NMR STRUCTURE DETERMINATION. REMARK 4 REMARK 4 1AYG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.8 REMARK 210 IONIC STRENGTH : 120MM ACETATE REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O, OR 99.98% REMARK 210 D2O CONTAINING 120MM REMARK 210 DEUTERATED ACETATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, DQF-COSY, TOCSY, E.COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : ARX500, AMX500 & DMX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWER ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 1H-NMR SPECTROSCOPY REMARK 210 ON CYTOCHROME C-552 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -41.75 -157.07 REMARK 500 1 ASP A 15 148.74 163.63 REMARK 500 1 LEU A 16 -75.68 -50.39 REMARK 500 1 ALA A 18 67.58 -118.39 REMARK 500 1 LYS A 20 -95.72 -128.96 REMARK 500 1 VAL A 21 -72.81 -94.27 REMARK 500 1 ALA A 33 109.91 163.59 REMARK 500 1 LEU A 42 -70.87 -56.78 REMARK 500 1 LYS A 48 -59.97 -129.79 REMARK 500 1 SER A 51 167.65 179.50 REMARK 500 1 ASN A 63 78.07 -104.09 REMARK 500 2 GLU A 2 -40.08 -178.69 REMARK 500 2 ASP A 15 136.12 161.07 REMARK 500 2 LYS A 20 -56.46 -140.39 REMARK 500 2 TYR A 32 -132.57 -109.94 REMARK 500 2 ALA A 33 107.67 78.50 REMARK 500 2 ASP A 37 39.08 -94.27 REMARK 500 2 LEU A 42 -70.09 -65.14 REMARK 500 2 SER A 51 56.50 169.49 REMARK 500 2 VAL A 57 106.98 -50.01 REMARK 500 3 GLN A 3 -42.62 173.06 REMARK 500 3 HIS A 14 -169.38 -108.39 REMARK 500 3 ASP A 15 135.95 162.69 REMARK 500 3 TYR A 32 -115.57 -96.61 REMARK 500 3 ALA A 33 106.97 76.66 REMARK 500 3 ASN A 63 57.22 -104.57 REMARK 500 4 GLN A 3 -43.29 82.73 REMARK 500 4 HIS A 14 -171.39 -69.87 REMARK 500 4 ASP A 15 132.28 169.98 REMARK 500 4 LEU A 16 -70.05 -42.65 REMARK 500 4 ALA A 18 59.46 -153.70 REMARK 500 4 LYS A 19 101.79 -48.92 REMARK 500 4 ALA A 33 -32.81 170.47 REMARK 500 4 VAL A 57 104.60 -46.17 REMARK 500 4 ASN A 63 55.15 -96.32 REMARK 500 5 GLN A 3 -75.29 168.65 REMARK 500 5 ASP A 15 23.27 -160.44 REMARK 500 5 LEU A 16 -59.32 81.36 REMARK 500 5 LYS A 19 97.09 -51.17 REMARK 500 5 LYS A 20 -89.37 -113.16 REMARK 500 5 ILE A 46 -60.03 -102.20 REMARK 500 5 SER A 51 150.76 179.81 REMARK 500 5 VAL A 57 107.61 -43.66 REMARK 500 5 GLN A 62 -162.79 -100.46 REMARK 500 5 ASN A 63 65.84 -117.69 REMARK 500 5 ILE A 79 100.05 -47.85 REMARK 500 6 GLU A 2 -44.20 -176.41 REMARK 500 6 LYS A 6 -73.75 -88.92 REMARK 500 6 ASP A 15 139.66 -178.94 REMARK 500 6 ALA A 18 109.01 53.86 REMARK 500 6 LYS A 19 59.71 172.91 REMARK 500 6 LYS A 20 -176.19 -171.65 REMARK 500 6 ALA A 24 153.23 -49.73 REMARK 500 6 ALA A 33 107.93 168.61 REMARK 500 6 ASP A 37 50.31 -174.86 REMARK 500 6 LYS A 48 64.57 -159.35 REMARK 500 6 VAL A 57 109.99 -48.35 REMARK 500 7 GLU A 2 71.60 -113.10 REMARK 500 7 GLN A 3 -47.69 -175.11 REMARK 500 7 CYS A 13 -39.37 -131.64 REMARK 500 7 HIS A 14 -168.63 -74.87 REMARK 500 7 ASP A 15 136.15 166.86 REMARK 500 7 LYS A 19 100.66 -42.64 REMARK 500 7 VAL A 21 -68.67 -126.96 REMARK 500 7 TYR A 32 -127.55 -112.39 REMARK 500 7 ALA A 33 108.00 80.35 REMARK 500 7 LYS A 48 11.77 -142.25 REMARK 500 7 SER A 51 94.92 174.74 REMARK 500 7 ASN A 63 58.87 -97.33 REMARK 500 7 ILE A 79 99.72 -62.06 REMARK 500 8 GLN A 3 -25.75 84.04 REMARK 500 8 GLN A 7 -74.77 -56.75 REMARK 500 8 ASP A 15 123.16 162.78 REMARK 500 8 ALA A 18 49.96 -164.35 REMARK 500 8 LYS A 19 164.94 -49.49 REMARK 500 8 LYS A 20 -65.10 -150.09 REMARK 500 8 TYR A 32 -139.96 -107.71 REMARK 500 8 ALA A 33 112.80 83.37 REMARK 500 8 LYS A 48 -77.46 -108.03 REMARK 500 8 SER A 51 156.20 179.02 REMARK 500 8 TRP A 54 -30.71 -134.08 REMARK 500 8 ASN A 63 72.77 -110.53 REMARK 500 9 GLN A 3 -43.31 -142.82 REMARK 500 9 ASP A 15 120.68 166.99 REMARK 500 9 ALA A 18 72.43 -152.78 REMARK 500 9 LYS A 20 -77.13 -116.59 REMARK 500 9 ALA A 33 109.78 160.78 REMARK 500 9 LYS A 48 31.42 -144.23 REMARK 500 9 SER A 51 90.98 174.89 REMARK 500 9 VAL A 57 101.70 -41.56 REMARK 500 9 ILE A 79 92.11 -69.79 REMARK 500 10 GLU A 2 -40.93 -171.32 REMARK 500 10 CYS A 13 -40.04 -133.45 REMARK 500 10 ASP A 15 119.37 163.47 REMARK 500 10 LYS A 20 -69.43 -142.16 REMARK 500 10 TYR A 32 -149.87 -104.38 REMARK 500 10 ALA A 33 -33.73 84.10 REMARK 500 10 LYS A 36 33.68 -96.88 REMARK 500 10 ASP A 37 45.18 169.66 REMARK 500 10 LYS A 48 -71.70 -123.33 REMARK 500 10 SER A 51 144.18 177.22 REMARK 500 11 ASP A 15 129.02 164.39 REMARK 500 11 LYS A 20 -97.05 -160.26 REMARK 500 11 TYR A 32 -145.57 -125.64 REMARK 500 11 ALA A 33 109.82 81.92 REMARK 500 11 ARG A 35 36.92 -82.97 REMARK 500 11 LYS A 36 -4.70 69.73 REMARK 500 11 ASP A 37 52.87 167.05 REMARK 500 11 LEU A 42 -75.90 -47.13 REMARK 500 11 SER A 51 81.80 168.27 REMARK 500 11 ASN A 63 47.16 -88.67 REMARK 500 12 GLU A 2 -34.78 -179.57 REMARK 500 12 ASP A 15 136.25 173.19 REMARK 500 12 ALA A 18 81.32 -152.73 REMARK 500 12 LYS A 19 90.50 -55.16 REMARK 500 12 LYS A 20 -156.52 -89.97 REMARK 500 12 TYR A 32 -101.89 -98.27 REMARK 500 12 ALA A 33 104.97 72.37 REMARK 500 12 SER A 51 143.32 -173.65 REMARK 500 12 ASN A 63 60.98 -102.15 REMARK 500 13 GLN A 3 -44.77 169.95 REMARK 500 13 ASP A 15 145.77 -176.80 REMARK 500 13 ALA A 18 -179.29 55.39 REMARK 500 13 LYS A 19 101.72 70.53 REMARK 500 13 LYS A 20 -166.65 167.22 REMARK 500 13 TYR A 32 -111.63 -104.37 REMARK 500 13 ALA A 33 105.63 75.07 REMARK 500 13 LYS A 48 -76.88 -111.80 REMARK 500 13 ASN A 63 76.00 -115.86 REMARK 500 14 GLU A 2 75.67 -118.77 REMARK 500 14 GLN A 3 -55.22 -157.47 REMARK 500 14 ASP A 15 135.01 162.74 REMARK 500 14 LYS A 20 -95.80 -131.56 REMARK 500 14 ALA A 24 155.84 -49.93 REMARK 500 14 SER A 51 84.26 177.87 REMARK 500 14 TRP A 54 35.63 -144.83 REMARK 500 14 VAL A 57 103.61 -43.30 REMARK 500 15 GLU A 2 85.24 49.26 REMARK 500 15 GLN A 3 -62.31 -170.66 REMARK 500 15 HIS A 14 -174.86 -62.09 REMARK 500 15 ASP A 15 127.11 170.70 REMARK 500 15 LEU A 16 -71.73 -42.36 REMARK 500 15 LYS A 20 -74.46 -91.71 REMARK 500 15 TYR A 32 -103.50 -88.94 REMARK 500 15 ALA A 33 106.98 75.40 REMARK 500 15 LYS A 48 -78.84 -126.71 REMARK 500 16 GLN A 3 -37.32 -170.05 REMARK 500 16 GLN A 7 -79.35 -53.92 REMARK 500 16 ASP A 15 136.23 166.69 REMARK 500 16 LYS A 19 98.26 -61.47 REMARK 500 16 LYS A 20 -97.76 -109.07 REMARK 500 16 TYR A 32 -144.42 -123.64 REMARK 500 16 ALA A 33 107.46 78.96 REMARK 500 16 ARG A 35 -163.66 -61.06 REMARK 500 16 ASP A 37 70.86 178.77 REMARK 500 16 SER A 51 159.57 176.04 REMARK 500 16 VAL A 57 106.62 -46.38 REMARK 500 17 GLN A 3 -48.94 179.74 REMARK 500 17 ASP A 15 124.02 164.29 REMARK 500 17 ALA A 18 58.56 -158.10 REMARK 500 17 LYS A 20 -105.45 -122.81 REMARK 500 17 TYR A 32 -143.63 -106.55 REMARK 500 17 ALA A 33 -37.70 83.55 REMARK 500 17 ASP A 37 44.92 -178.85 REMARK 500 17 LYS A 48 -72.68 -104.25 REMARK 500 18 GLU A 2 62.94 -165.30 REMARK 500 18 GLN A 3 -49.42 -172.25 REMARK 500 18 LYS A 6 -71.74 -54.78 REMARK 500 18 ASP A 15 126.61 164.68 REMARK 500 18 LYS A 19 108.97 -53.02 REMARK 500 18 LYS A 20 -147.20 -114.06 REMARK 500 18 TYR A 32 -142.65 -106.88 REMARK 500 18 ALA A 33 107.38 80.98 REMARK 500 18 LYS A 48 -66.70 -125.01 REMARK 500 18 SER A 56 51.60 -113.16 REMARK 500 18 ASN A 63 52.07 -109.34 REMARK 500 19 GLU A 2 42.30 179.93 REMARK 500 19 ASP A 15 137.21 175.58 REMARK 500 19 ALA A 18 98.34 49.31 REMARK 500 19 LYS A 19 88.34 171.04 REMARK 500 19 LYS A 20 -153.31 175.26 REMARK 500 19 TYR A 32 -123.44 -101.44 REMARK 500 19 ALA A 33 109.95 81.24 REMARK 500 19 LYS A 48 -71.67 -149.18 REMARK 500 19 SER A 51 143.57 179.25 REMARK 500 19 TRP A 54 33.15 -152.66 REMARK 500 19 ASN A 63 50.07 -98.86 REMARK 500 20 GLU A 2 86.40 46.34 REMARK 500 20 GLN A 3 -54.21 179.17 REMARK 500 20 ASP A 15 147.94 164.06 REMARK 500 20 ALA A 18 55.10 -140.44 REMARK 500 20 LYS A 20 -91.39 -122.52 REMARK 500 20 ALA A 33 107.80 175.32 REMARK 500 20 LYS A 48 -46.19 -146.66 REMARK 500 20 SER A 56 41.72 -95.61 REMARK 500 20 GLN A 62 -166.62 -118.86 REMARK 500 20 ASN A 63 77.62 -113.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 81 DBREF 1AYG A 1 80 UNP P15452 CY552_HYDTH 19 98 SEQRES 1 A 80 ASN GLU GLN LEU ALA LYS GLN LYS GLY CYS MET ALA CYS SEQRES 2 A 80 HIS ASP LEU LYS ALA LYS LYS VAL GLY PRO ALA TYR ALA SEQRES 3 A 80 ASP VAL ALA LYS LYS TYR ALA GLY ARG LYS ASP ALA VAL SEQRES 4 A 80 ASP TYR LEU ALA GLY LYS ILE LYS LYS GLY GLY SER GLY SEQRES 5 A 80 VAL TRP GLY SER VAL PRO MET PRO PRO GLN ASN VAL THR SEQRES 6 A 80 ASP ALA GLU ALA LYS GLN LEU ALA GLN TRP ILE LEU SER SEQRES 7 A 80 ILE LYS HET HEC A 81 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 HELIX 1 1 GLN A 3 GLN A 7 1 5 HELIX 2 2 TYR A 25 TYR A 32 1 8 HELIX 3 3 ALA A 38 LYS A 47 1 10 HELIX 4 4 ALA A 67 SER A 78 1 12 LINK CAB HEC A 81 SG CYS A 10 1555 1555 1.81 LINK CAC HEC A 81 SG CYS A 13 1555 1555 1.81 LINK FE HEC A 81 NE2 HIS A 14 1555 1555 2.98 SITE 1 AC1 14 GLY A 9 CYS A 10 CYS A 13 HIS A 14 SITE 2 AC1 14 PRO A 23 TYR A 32 ILE A 46 GLY A 52 SITE 3 AC1 14 TRP A 54 GLY A 55 VAL A 57 MET A 59 SITE 4 AC1 14 GLN A 62 LEU A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 267 0 1 4 0 0 4 6 0 0 0 7 END