HEADER DNA BINDING PROTEIN/DNA 04-OCT-93 1APL TITLE CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR TITLE 2 COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA TITLE 3 INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*C COMPND 4 P*AP*CP*GP*C)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*A COMPND 10 P*CP*AP*TP*G)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN (MAT-ALPHA2 HOMEODOMAIN); COMPND 15 CHAIN: C, D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 GENE: MAT ALPHA2 RES. 128-210; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PAV56; SOURCE 13 EXPRESSION_SYSTEM_GENE: MAT ALPHA2 RES. 128-210 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, DNA BINDING PROTEIN/DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.WOLBERGER,A.K.VERSHON,B.LIU,A.D.JOHNSON,C.O.PABO REVDAT 3 24-FEB-09 1APL 1 VERSN REVDAT 2 01-APR-03 1APL 1 JRNL REVDAT 1 21-OCT-93 1APL 0 JRNL AUTH C.WOLBERGER,A.K.VERSHON,B.LIU,A.D.JOHNSON,C.O.PABO JRNL TITL CRYSTAL STRUCTURE OF A MAT ALPHA 2 JRNL TITL 2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL JRNL TITL 3 MODEL FOR HOMEODOMAIN-DNA INTERACTIONS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 67 517 1991 JRNL REFN ISSN 0092-8674 JRNL PMID 1682054 JRNL DOI 10.1016/0092-8674(91)90526-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.WOLBERGER,A.K.VERSHON,A.D.JOHNSON,C.O.PABO REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION REMARK 1 TITL 2 STUDIES OF A MAT-ALPHA2-DNA COMPLEX REMARK 1 REF J.MOL.BIOL. V. 217 11 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 938 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 3.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1APL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7334 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.50, VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.96500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 128 REMARK 465 LYS C 129 REMARK 465 PRO C 130 REMARK 465 ILE C 190 REMARK 465 THR C 191 REMARK 465 ILE C 192 REMARK 465 ALA C 193 REMARK 465 PRO C 194 REMARK 465 GLU C 195 REMARK 465 LEU C 196 REMARK 465 ALA C 197 REMARK 465 ASP C 198 REMARK 465 LEU C 199 REMARK 465 LEU C 200 REMARK 465 SER C 201 REMARK 465 GLY C 202 REMARK 465 GLU C 203 REMARK 465 PRO C 204 REMARK 465 LEU C 205 REMARK 465 ALA C 206 REMARK 465 LYS C 207 REMARK 465 LYS C 208 REMARK 465 LYS C 209 REMARK 465 GLU C 210 REMARK 465 THR D 128 REMARK 465 LYS D 129 REMARK 465 PRO D 130 REMARK 465 TYR D 131 REMARK 465 ILE D 190 REMARK 465 THR D 191 REMARK 465 ILE D 192 REMARK 465 ALA D 193 REMARK 465 PRO D 194 REMARK 465 GLU D 195 REMARK 465 LEU D 196 REMARK 465 ALA D 197 REMARK 465 ASP D 198 REMARK 465 LEU D 199 REMARK 465 LEU D 200 REMARK 465 SER D 201 REMARK 465 GLY D 202 REMARK 465 GLU D 203 REMARK 465 PRO D 204 REMARK 465 LEU D 205 REMARK 465 ALA D 206 REMARK 465 LYS D 207 REMARK 465 LYS D 208 REMARK 465 LYS D 209 REMARK 465 GLU D 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR C 131 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS C 134 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 138 CG CD CE NZ REMARK 470 LYS C 150 CG CD CE NZ REMARK 470 LYS C 160 CG CD CE NZ REMARK 470 LYS C 167 CG CD CE NZ REMARK 470 ARG D 132 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 134 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 150 CG CD CE NZ REMARK 470 GLU D 153 CG CD OE1 OE2 REMARK 470 ASP D 158 CG OD1 OD2 REMARK 470 LYS D 160 CG CD CE NZ REMARK 470 LYS D 167 CG CD CE NZ REMARK 470 LYS D 188 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG B 23 NZ LYS C 177 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA A 1 O3' DA A 1 C3' -0.037 REMARK 500 DA A 1 N3 DA A 1 C4 0.037 REMARK 500 DC A 2 C4' DC A 2 C3' -0.073 REMARK 500 DA A 7 C5' DA A 7 C4' -0.067 REMARK 500 DA A 7 C4' DA A 7 C3' -0.064 REMARK 500 DT A 6 O3' DA A 7 P 0.076 REMARK 500 DA A 8 C8 DA A 8 N9 -0.050 REMARK 500 DA A 8 C6 DA A 8 N6 -0.049 REMARK 500 DT A 9 P DT A 9 O5' 0.062 REMARK 500 DT A 9 C5' DT A 9 C4' 0.047 REMARK 500 DT A 9 N1 DT A 9 C2 0.052 REMARK 500 DT A 14 C5' DT A 14 C4' 0.043 REMARK 500 DT A 15 C6 DT A 15 N1 -0.043 REMARK 500 DA A 16 P DA A 16 O5' 0.075 REMARK 500 DA A 16 N9 DA A 16 C4 -0.037 REMARK 500 DA A 18 P DA A 18 O5' -0.085 REMARK 500 DT B 22 C5' DT B 22 C4' 0.048 REMARK 500 DT B 22 C5 DT B 22 C7 0.054 REMARK 500 DT B 26 C5 DT B 26 C7 0.057 REMARK 500 DG B 33 C5' DG B 33 C4' 0.067 REMARK 500 DT B 36 N3 DT B 36 C4 -0.063 REMARK 500 DT B 36 C5 DT B 36 C7 0.037 REMARK 500 DT B 37 O3' DT B 37 C3' -0.048 REMARK 500 DA B 38 C8 DA B 38 N9 -0.054 REMARK 500 DC B 39 C2' DC B 39 C1' -0.068 REMARK 500 DA B 40 O4' DA B 40 C4' -0.061 REMARK 500 DA B 40 C6 DA B 40 N1 -0.042 REMARK 500 ARG C 135 CZ ARG C 135 NH2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 1 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA A 1 C5 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC A 2 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DC A 2 C4' - C3' - C2' ANGL. DEV. = -8.4 DEGREES REMARK 500 DC A 2 O4' - C1' - C2' ANGL. DEV. = -7.0 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC A 2 O3' - P - O5' ANGL. DEV. = 39.0 DEGREES REMARK 500 DC A 2 O3' - P - OP2 ANGL. DEV. = -19.8 DEGREES REMARK 500 DC A 2 O3' - P - OP1 ANGL. DEV. = -16.9 DEGREES REMARK 500 DA A 3 O3' - P - OP1 ANGL. DEV. = 12.6 DEGREES REMARK 500 DT A 4 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT A 4 O3' - P - O5' ANGL. DEV. = -29.1 DEGREES REMARK 500 DT A 4 O3' - P - OP1 ANGL. DEV. = 21.0 DEGREES REMARK 500 DG A 5 O4' - C1' - C2' ANGL. DEV. = -8.4 DEGREES REMARK 500 DT A 6 C1' - O4' - C4' ANGL. DEV. = -9.6 DEGREES REMARK 500 DT A 6 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT A 6 O4' - C1' - C2' ANGL. DEV. = -11.2 DEGREES REMARK 500 DT A 6 O4' - C1' - N1 ANGL. DEV. = 7.7 DEGREES REMARK 500 DT A 6 O3' - P - O5' ANGL. DEV. = -38.2 DEGREES REMARK 500 DT A 6 O3' - P - OP2 ANGL. DEV. = 12.8 DEGREES REMARK 500 DA A 7 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT A 6 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DA A 7 O3' - P - O5' ANGL. DEV. = 31.7 DEGREES REMARK 500 DA A 7 O3' - P - OP2 ANGL. DEV. = -29.7 DEGREES REMARK 500 DA A 8 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA A 8 C6 - N1 - C2 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA A 8 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA A 8 O3' - P - O5' ANGL. DEV. = -26.1 DEGREES REMARK 500 DA A 8 O3' - P - OP2 ANGL. DEV. = 17.4 DEGREES REMARK 500 DT A 9 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT A 9 N3 - C2 - O2 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT A 10 O4' - C4' - C3' ANGL. DEV. = -8.1 DEGREES REMARK 500 DT A 10 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT A 10 C4 - C5 - C6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT A 9 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DT A 10 O3' - P - OP2 ANGL. DEV. = 23.0 DEGREES REMARK 500 DT A 10 O3' - P - OP1 ANGL. DEV. = -18.7 DEGREES REMARK 500 DC A 11 P - O5' - C5' ANGL. DEV. = -11.1 DEGREES REMARK 500 DC A 11 O3' - P - O5' ANGL. DEV. = 23.4 DEGREES REMARK 500 DC A 11 O3' - P - OP2 ANGL. DEV. = -38.8 DEGREES REMARK 500 DC A 11 O3' - P - OP1 ANGL. DEV. = 10.4 DEGREES REMARK 500 DA A 12 C1' - O4' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DA A 12 O4' - C1' - C2' ANGL. DEV. = -8.1 DEGREES REMARK 500 DA A 12 O3' - P - O5' ANGL. DEV. = -12.6 DEGREES REMARK 500 DA A 12 O3' - P - OP2 ANGL. DEV. = 34.4 DEGREES REMARK 500 DA A 12 O3' - P - OP1 ANGL. DEV. = -24.0 DEGREES REMARK 500 DT A 13 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT A 13 O3' - P - OP2 ANGL. DEV. = 11.9 DEGREES REMARK 500 DT A 13 O3' - P - OP1 ANGL. DEV. = -16.2 DEGREES REMARK 500 DT A 14 C4 - C5 - C6 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 177 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 132 -146.01 -167.35 REMARK 500 HIS C 134 115.43 82.47 REMARK 500 ASN C 154 79.81 -164.63 REMARK 500 SER C 170 31.00 -72.73 REMARK 500 ARG C 173 -52.29 -9.69 REMARK 500 ASN D 140 -57.44 151.33 REMARK 500 ASN D 151 10.94 -69.59 REMARK 500 ILE D 152 -46.69 -29.30 REMARK 500 LEU D 157 90.28 -57.00 REMARK 500 THR D 159 -50.98 9.78 REMARK 500 LYS D 167 -77.78 -71.44 REMARK 500 ARG D 173 -73.10 22.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA A 1 0.05 SIDE_CHAIN REMARK 500 DT A 4 0.06 SIDE_CHAIN REMARK 500 DT A 10 0.09 SIDE_CHAIN REMARK 500 DC A 19 0.06 SIDE_CHAIN REMARK 500 DT B 26 0.09 SIDE_CHAIN REMARK 500 DT B 28 0.06 SIDE_CHAIN REMARK 500 DT B 36 0.07 SIDE_CHAIN REMARK 500 DC B 39 0.08 SIDE_CHAIN REMARK 500 DA B 40 0.07 SIDE_CHAIN REMARK 500 ARG D 185 0.28 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1APL C 128 210 UNP Q6B2C0 MTAL2_YEAST 128 210 DBREF 1APL D 128 210 UNP Q6B2C0 MTAL2_YEAST 128 210 DBREF 1APL A 1 21 PDB 1APL 1APL 1 21 DBREF 1APL B 22 42 PDB 1APL 1APL 22 42 SEQRES 1 A 21 DA DC DA DT DG DT DA DA DT DT DC DA DT SEQRES 2 A 21 DT DT DA DC DA DC DG DC SEQRES 1 B 21 DT DG DC DG DT DG DT DA DA DA DT DG DA SEQRES 2 B 21 DA DT DT DA DC DA DT DG SEQRES 1 C 83 THR LYS PRO TYR ARG GLY HIS ARG PHE THR LYS GLU ASN SEQRES 2 C 83 VAL ARG ILE LEU GLU SER TRP PHE ALA LYS ASN ILE GLU SEQRES 3 C 83 ASN PRO TYR LEU ASP THR LYS GLY LEU GLU ASN LEU MET SEQRES 4 C 83 LYS ASN THR SER LEU SER ARG ILE GLN ILE LYS ASN TRP SEQRES 5 C 83 VAL SER ASN ARG ARG ARG LYS GLU LYS THR ILE THR ILE SEQRES 6 C 83 ALA PRO GLU LEU ALA ASP LEU LEU SER GLY GLU PRO LEU SEQRES 7 C 83 ALA LYS LYS LYS GLU SEQRES 1 D 83 THR LYS PRO TYR ARG GLY HIS ARG PHE THR LYS GLU ASN SEQRES 2 D 83 VAL ARG ILE LEU GLU SER TRP PHE ALA LYS ASN ILE GLU SEQRES 3 D 83 ASN PRO TYR LEU ASP THR LYS GLY LEU GLU ASN LEU MET SEQRES 4 D 83 LYS ASN THR SER LEU SER ARG ILE GLN ILE LYS ASN TRP SEQRES 5 D 83 VAL SER ASN ARG ARG ARG LYS GLU LYS THR ILE THR ILE SEQRES 6 D 83 ALA PRO GLU LEU ALA ASP LEU LEU SER GLY GLU PRO LEU SEQRES 7 D 83 ALA LYS LYS LYS GLU HELIX 1 1 THR C 137 ASN C 151 1 15 HELIX 2 2 ASP C 158 THR C 169 1 12 HELIX 3 3 SER C 172 LYS C 188 1 17 HELIX 4 4 THR D 137 ILE D 152 1 16 HELIX 5 5 ASP D 158 SER D 170 1 13 HELIX 6 6 ARG D 173 LYS D 186 1 14 HELIX 7 7 GLU D 187 THR D 189 5 3 CRYST1 60.780 39.930 68.790 90.00 97.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016453 0.000000 0.002122 0.00000 SCALE2 0.000000 0.025044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014657 0.00000 MASTER 454 0 0 7 0 0 0 6 0 0 0 18 END