HEADER TRANSCRIPTION/DNA 23-JAN-98 1A3Q TITLE HUMAN NF-KAPPA-B P52 BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*C)-3'); COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*GP*GP*GP*AP*TP*TP*CP*CP*CP*C)-3'); COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (NUCLEAR FACTOR KAPPA-B P52); COMPND 11 CHAIN: A, B; COMPND 12 SYNONYM: NUCLEAR FACTOR KAPPA-B P52; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PLM1 KEYWDS TRANSCRIPTION FACTOR, IMMUNE RESPONSE, DNA-PROTEIN COMPLEX, KEYWDS 2 TRANSCRIPTION/DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.CRAMER,C.J.LARSON,G.L.VERDINE,C.W.MULLER REVDAT 2 24-FEB-09 1A3Q 1 VERSN REVDAT 1 11-JUN-98 1A3Q 0 JRNL AUTH P.CRAMER,C.J.LARSON,G.L.VERDINE,C.W.MULLER JRNL TITL STRUCTURE OF THE HUMAN NF-KAPPAB P52 HOMODIMER-DNA JRNL TITL 2 COMPLEX AT 2.1 A RESOLUTION. JRNL REF EMBO J. V. 16 7078 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9384586 JRNL DOI 10.1093/EMBOJ/16.23.7078 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.CRAMER,C.W.MULLER REMARK 1 TITL ENGINEERING OF DIFFRACTION-QUALITY CRYSTALS OF THE REMARK 1 TITL 2 NF-KAPPAB P52 HOMODIMER:DNA COMPLEX REMARK 1 REF FEBS LETT. V. 405 373 1997 REMARK 1 REFN ISSN 0014-5793 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 39039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 3805 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3732 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 331 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4518 REMARK 3 NUCLEIC ACID ATOMS : 445 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 785 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.70000 REMARK 3 B22 (A**2) : 8.40000 REMARK 3 B33 (A**2) : -2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.64 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.870 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.550 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.280 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.850 ; 3.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER MOLECULES HAVE BEEN INCLUDED REMARK 3 IN THE MODEL WHEN A PEAK HIGHT GREATER THAN 3.0 SIGMA WAS REMARK 3 REACHED IN A FO-FC MAP AND WHEN REASONABLE H-BONDING WAS REMARK 3 OBSERVED (<3.5 ANGSTROM FROM ANOTHER POLAR ATOM). AT LATER REMARK 3 STAGES, SEVERAL WATER MOLECULES WERE REMOVED WHICH SHOWED REMARK 3 INSUFFICIENT 2FO-FC ELECTRON DENSITY. THIS PROCEDURE LEFT REMARK 3 SEVERAL OTHER WATER MOLECULES WITHOUT APPARENT HYDROGEN REMARK 3 BONDING. HOWEVER, THESE WATER MOLECULES WERE LEFT IN THE MODEL REMARK 3 SINCE THEY SHOW GOOD 2FO-FC ELECTRON DENSITY. FURTHER, THEIR REMARK 3 PRESENCE LOWERS THE FREE R-FACTOR. REMARK 4 REMARK 4 1A3Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-96 REMARK 200 TEMPERATURE (KELVIN) : 120.00 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 6.10000 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 31.20000 REMARK 200 FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MODIFIED HUMAN NF-KAPPAB P50-DNA COMPLEX, PDB REMARK 200 ENTRY REMARK 200 REMARK 200 REMARK: DATA WERE COLLECTED USING THE OSCILLATION METHOD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN-DNA COMPLEX WAS REMARK 280 CRYSTALLIZED USING THE HANGING DROP METHOD. THE RESERVOIR REMARK 280 SOLUTION CONTAINED 5% PEG 4000, 5 MM MGSO4, 50 MM MES PH 6.0 REMARK 280 AND 3 MM DTT. DROPS CONTAINED A 1:1 MIXTURE OF COMPLEX REMARK 280 SOLUTION AND RESERVOIR SOLUTION., VAPOR DIFFUSION - HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.10000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.10000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 508 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG D 608 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC D 614 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 LEU A 117 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 GLN A 164 N - CA - C ANGL. DEV. = 20.1 DEGREES REMARK 500 LEU B 117 CB - CG - CD1 ANGL. DEV. = -12.5 DEGREES REMARK 500 GLN B 164 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 64.17 -109.92 REMARK 500 LYS A 72 132.97 -32.99 REMARK 500 ASN A 84 43.93 70.36 REMARK 500 ASP A 100 -71.03 -47.45 REMARK 500 PRO A 101 101.82 -59.71 REMARK 500 PRO A 102 106.28 -57.09 REMARK 500 GLU A 116 7.33 -65.28 REMARK 500 LYS A 127 -82.27 -102.41 REMARK 500 LEU A 159 38.28 -79.57 REMARK 500 ARG A 160 -107.57 -93.02 REMARK 500 PRO A 163 161.00 -49.28 REMARK 500 ALA A 225 -7.65 -142.06 REMARK 500 ASP A 266 -141.43 -102.47 REMARK 500 ASN A 268 -76.68 -118.70 REMARK 500 GLN A 284 6.96 59.49 REMARK 500 LYS A 298 45.17 -88.23 REMARK 500 ASN B 84 41.98 73.36 REMARK 500 PRO B 88 125.34 -33.66 REMARK 500 GLU B 116 2.85 -57.80 REMARK 500 ASN B 145 -29.80 -165.89 REMARK 500 ARG B 160 -94.53 -76.90 REMARK 500 GLU B 177 22.70 -77.35 REMARK 500 ALA B 225 19.84 -143.86 REMARK 500 LYS B 252 131.70 -35.60 REMARK 500 ASP B 266 -156.86 -103.48 REMARK 500 ASN B 268 -78.80 -122.14 REMARK 500 GLN B 284 -4.73 69.81 REMARK 500 LYS B 298 45.70 -79.10 REMARK 500 ARG B 313 -71.28 -74.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC D 614 0.07 SIDE_CHAIN REMARK 500 TYR A 263 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2268 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH C2632 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH D2621 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH D2629 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH D2695 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH D2742 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B2138 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A2174 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A2221 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2244 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH A2248 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH B2261 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A2259 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH B2275 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH A2285 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B2296 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH B2309 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH B2421 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A2366 DISTANCE = 8.89 ANGSTROMS REMARK 525 HOH B2467 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH A2380 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2381 DISTANCE = 5.49 ANGSTROMS REMARK 525 HOH A2413 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B2506 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH B2511 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A2431 DISTANCE = 8.10 ANGSTROMS REMARK 525 HOH A2436 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A2443 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A2513 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH B2607 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2608 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B2615 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH B2666 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH B2668 DISTANCE = 9.09 ANGSTROMS REMARK 525 HOH B2691 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH B2696 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B2700 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B2710 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A2636 DISTANCE = 8.27 ANGSTROMS REMARK 525 HOH B2743 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH A2661 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2662 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH B2774 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A2686 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A2692 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH A2713 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A2714 DISTANCE = 12.87 ANGSTROMS REMARK 525 HOH A2717 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH A2749 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A2753 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH A2757 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2779 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A2782 DISTANCE = 7.51 ANGSTROMS DBREF 1A3Q A 37 327 UNP Q00653 NFKB2_HUMAN 37 327 DBREF 1A3Q B 37 327 UNP Q00653 NFKB2_HUMAN 37 327 DBREF 1A3Q C 505 515 PDB 1A3Q 1A3Q 505 515 DBREF 1A3Q D 605 615 PDB 1A3Q 1A3Q 605 615 SEQADV 1A3Q ILE A 213 UNP Q00653 THR 213 CONFLICT SEQADV 1A3Q ILE B 213 UNP Q00653 THR 213 CONFLICT SEQRES 1 C 11 DG DG DG DG DA DA DT DC DC DC DC SEQRES 1 D 11 DG DG DG DG DA DT DT DC DC DC DC SEQRES 1 A 285 GLY PRO TYR LEU VAL ILE VAL GLU GLN PRO LYS GLN ARG SEQRES 2 A 285 GLY PHE ARG PHE ARG TYR GLY CYS GLU GLY PRO SER HIS SEQRES 3 A 285 GLY GLY LEU PRO GLY ALA SER SER GLU LYS GLY ARG LYS SEQRES 4 A 285 THR TYR PRO THR VAL LYS ILE CYS ASN TYR GLU GLY PRO SEQRES 5 A 285 ALA LYS ILE GLU VAL ASP LEU VAL THR HIS SER ASP PRO SEQRES 6 A 285 PRO ARG ALA HIS ALA HIS SER LEU VAL GLY LYS GLN CYS SEQRES 7 A 285 SER GLU LEU GLY ILE CYS ALA VAL SER VAL GLY PRO LYS SEQRES 8 A 285 ASP MET THR ALA GLN PHE ASN ASN LEU GLY VAL LEU HIS SEQRES 9 A 285 VAL THR LYS LYS ASN MET MET GLY THR MET ILE GLN LYS SEQRES 10 A 285 LEU GLN ARG GLN ARG LEU ARG SER ARG PRO GLN GLY LEU SEQRES 11 A 285 THR GLU ALA GLU GLN ARG GLU LEU GLU GLN GLU ALA LYS SEQRES 12 A 285 GLU LEU LYS LYS VAL MET ASP LEU SER ILE VAL ARG LEU SEQRES 13 A 285 ARG PHE SER ALA PHE LEU ARG SER LEU PRO LEU LYS PRO SEQRES 14 A 285 VAL ILE SER GLN PRO ILE HIS ASP SER LYS SER PRO GLY SEQRES 15 A 285 ALA SER ASN LEU LYS ILE SER ARG MET ASP LYS THR ALA SEQRES 16 A 285 GLY SER VAL ARG GLY GLY ASP GLU VAL TYR LEU LEU CYS SEQRES 17 A 285 ASP LYS VAL GLN LYS ASP ASP ILE GLU VAL ARG PHE TYR SEQRES 18 A 285 GLU ASP ASP GLU ASN GLY TRP GLN ALA PHE GLY ASP PHE SEQRES 19 A 285 SER PRO THR ASP VAL HIS LYS GLN TYR ALA ILE VAL PHE SEQRES 20 A 285 ARG THR PRO PRO TYR HIS LYS MET LYS ILE GLU ARG PRO SEQRES 21 A 285 VAL THR VAL PHE LEU GLN LEU LYS ARG LYS ARG GLY GLY SEQRES 22 A 285 ASP VAL SER ASP SER LYS GLN PHE THR TYR TYR PRO SEQRES 1 B 285 GLY PRO TYR LEU VAL ILE VAL GLU GLN PRO LYS GLN ARG SEQRES 2 B 285 GLY PHE ARG PHE ARG TYR GLY CYS GLU GLY PRO SER HIS SEQRES 3 B 285 GLY GLY LEU PRO GLY ALA SER SER GLU LYS GLY ARG LYS SEQRES 4 B 285 THR TYR PRO THR VAL LYS ILE CYS ASN TYR GLU GLY PRO SEQRES 5 B 285 ALA LYS ILE GLU VAL ASP LEU VAL THR HIS SER ASP PRO SEQRES 6 B 285 PRO ARG ALA HIS ALA HIS SER LEU VAL GLY LYS GLN CYS SEQRES 7 B 285 SER GLU LEU GLY ILE CYS ALA VAL SER VAL GLY PRO LYS SEQRES 8 B 285 ASP MET THR ALA GLN PHE ASN ASN LEU GLY VAL LEU HIS SEQRES 9 B 285 VAL THR LYS LYS ASN MET MET GLY THR MET ILE GLN LYS SEQRES 10 B 285 LEU GLN ARG GLN ARG LEU ARG SER ARG PRO GLN GLY LEU SEQRES 11 B 285 THR GLU ALA GLU GLN ARG GLU LEU GLU GLN GLU ALA LYS SEQRES 12 B 285 GLU LEU LYS LYS VAL MET ASP LEU SER ILE VAL ARG LEU SEQRES 13 B 285 ARG PHE SER ALA PHE LEU ARG SER LEU PRO LEU LYS PRO SEQRES 14 B 285 VAL ILE SER GLN PRO ILE HIS ASP SER LYS SER PRO GLY SEQRES 15 B 285 ALA SER ASN LEU LYS ILE SER ARG MET ASP LYS THR ALA SEQRES 16 B 285 GLY SER VAL ARG GLY GLY ASP GLU VAL TYR LEU LEU CYS SEQRES 17 B 285 ASP LYS VAL GLN LYS ASP ASP ILE GLU VAL ARG PHE TYR SEQRES 18 B 285 GLU ASP ASP GLU ASN GLY TRP GLN ALA PHE GLY ASP PHE SEQRES 19 B 285 SER PRO THR ASP VAL HIS LYS GLN TYR ALA ILE VAL PHE SEQRES 20 B 285 ARG THR PRO PRO TYR HIS LYS MET LYS ILE GLU ARG PRO SEQRES 21 B 285 VAL THR VAL PHE LEU GLN LEU LYS ARG LYS ARG GLY GLY SEQRES 22 B 285 ASP VAL SER ASP SER LYS GLN PHE THR TYR TYR PRO FORMUL 5 HOH *785(H2 O) HELIX 1 1 ASN A 145 LEU A 159 1 15 HELIX 2 2 THR A 167 LYS A 183 1 17 HELIX 3 3 SER A 277 THR A 279 5 3 HELIX 4 4 CYS B 57 GLY B 59 5 3 HELIX 5 5 THR B 142 ARG B 162 1 21 HELIX 6 6 THR B 167 GLU B 175 1 9 HELIX 7 7 ALA B 178 LYS B 183 1 6 HELIX 8 8 SER B 222 SER B 226 5 5 HELIX 9 9 SER B 277 ASP B 280 5 4 SHEET 1 A 3 TYR A 39 GLU A 44 0 SHEET 2 A 3 THR A 79 CYS A 83 -1 N THR A 79 O GLU A 44 SHEET 3 A 3 THR A 130 GLN A 132 -1 N ALA A 131 O VAL A 80 SHEET 1 B 3 ARG A 54 TYR A 55 0 SHEET 2 B 3 LEU A 136 HIS A 140 1 O VAL A 138 N ARG A 54 SHEET 3 B 3 SER A 108 GLY A 111 -1 O SER A 108 N LEU A 139 SHEET 1 C 4 ILE A 230 MET A 233 0 SHEET 2 C 4 GLU A 245 CYS A 250 -1 N LEU A 249 O ARG A 232 SHEET 3 C 4 ALA A 286 ARG A 290 -1 O ILE A 287 N LEU A 248 SHEET 4 C 4 VAL A 281 HIS A 282 -1 N HIS A 282 O ALA A 286 SHEET 1 D 5 ALA A 237 SER A 239 0 SHEET 2 D 5 LYS A 321 TYR A 326 1 O THR A 324 N GLY A 238 SHEET 3 D 5 VAL A 303 ARG A 311 -1 O VAL A 303 N TYR A 325 SHEET 4 D 5 ILE A 258 GLU A 264 -1 N GLU A 259 O LYS A 310 SHEET 5 D 5 TRP A 270 PHE A 273 -1 O TRP A 270 N GLU A 264 SHEET 1 E 3 TYR B 39 GLU B 44 0 SHEET 2 E 3 THR B 79 CYS B 83 -1 O THR B 79 N VAL B 43 SHEET 3 E 3 THR B 130 GLN B 132 -1 N ALA B 131 O VAL B 80 SHEET 1 F 3 ARG B 54 TYR B 55 0 SHEET 2 F 3 LEU B 136 HIS B 140 1 O VAL B 138 N ARG B 54 SHEET 3 F 3 SER B 108 GLY B 111 -1 O SER B 108 N LEU B 139 SHEET 1 G 3 ILE B 230 MET B 233 0 SHEET 2 G 3 GLU B 245 CYS B 250 -1 N LEU B 249 O ARG B 232 SHEET 3 G 3 ALA B 286 ARG B 290 -1 N ILE B 287 O LEU B 248 SHEET 1 H 5 ALA B 237 SER B 239 0 SHEET 2 H 5 LYS B 321 TYR B 326 1 O THR B 324 N GLY B 238 SHEET 3 H 5 VAL B 303 LYS B 310 -1 O VAL B 303 N TYR B 325 SHEET 4 H 5 GLU B 259 GLU B 264 -1 O GLU B 259 N LYS B 310 SHEET 5 H 5 TRP B 270 PHE B 273 -1 O TRP B 270 N GLU B 264 CRYST1 44.200 121.000 134.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007413 0.00000 MTRIX1 1 -0.998073 -0.006188 0.061749 36.05790 1 MTRIX2 1 -0.006710 0.999943 -0.008260 0.90400 1 MTRIX3 1 -0.061694 -0.008658 -0.998058 2.54420 1 MTRIX1 2 -0.993760 0.109366 -0.021925 27.26530 1 MTRIX2 2 0.110253 0.992911 -0.044412 -1.47260 1 MTRIX3 2 0.016913 -0.046552 -0.998773 5.17550 1 MASTER 380 0 0 9 29 0 0 12 0 0 0 46 END