HEADER PEPTIDE NUCLEIC ACID/RNA 17-MAY-94 176D TITLE NMR SOLUTION STRUCTURE OF A PEPTIDE NUCLEIC ACID COMPLEXED WITH RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GPN*APN*APN*CPN*TPN*CPN)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(P*GP*AP*GP*UP*UP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS RNA, PNA, DOUBLE HELIX, PEPTIDE NUCLEIC ACID-RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.C.BROWN,J.M.VEAL REVDAT 3 13-JUL-11 176D 1 VERSN REVDAT 2 24-FEB-09 176D 1 VERSN REVDAT 1 01-NOV-94 176D 0 JRNL AUTH S.C.BROWN,S.A.THOMSON,J.M.VEAL,D.G.DAVIS JRNL TITL NMR SOLUTION STRUCTURE OF A PEPTIDE NUCLEIC ACID COMPLEXED JRNL TITL 2 WITH RNA. JRNL REF SCIENCE V. 265 777 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 7519361 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.10 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NUMBER OF PROTEIN ATOMS 0 NUMBER OF REMARK 3 NUCLEIC ACID ATOMS 3930 NUMBER OF SOLVENT ATOMS 0 REMARK 4 REMARK 4 176D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C' APN A 3 N1' CPN A 4 1.34 REMARK 500 C' APN A 2 N1' APN A 3 1.34 REMARK 500 C' TPN A 5 N1' CPN A 6 1.34 REMARK 500 C' GPN A 1 N1' APN A 2 1.34 REMARK 500 C' CPN A 4 N1' TPN A 5 1.34 REMARK 500 HO2' U B 10 H5' U B 11 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 U B 10 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 U B 11 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G B 7 C5' - C4' - O4' ANGL. DEV. = 5.4 DEGREES REMARK 500 2 G B 9 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 U B 10 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 2 U B 11 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 U B 10 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 3 U B 11 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 4 U B 10 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 4 U B 11 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 5 U B 10 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 5 U B 11 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 U B 10 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 6 U B 11 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 7 U B 10 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 7 U B 11 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 8 U B 10 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 8 U B 11 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 9 U B 10 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 9 U B 11 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 10 U B 10 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 10 U B 11 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 A B 8 0.07 SIDE CHAIN REMARK 500 1 U B 10 0.06 SIDE CHAIN REMARK 500 2 U B 10 0.07 SIDE CHAIN REMARK 500 3 A B 8 0.08 SIDE CHAIN REMARK 500 3 U B 10 0.07 SIDE CHAIN REMARK 500 4 A B 8 0.07 SIDE CHAIN REMARK 500 4 U B 11 0.10 SIDE CHAIN REMARK 500 5 A B 8 0.10 SIDE CHAIN REMARK 500 5 U B 10 0.08 SIDE CHAIN REMARK 500 5 C B 12 0.07 SIDE CHAIN REMARK 500 6 G B 7 0.08 SIDE CHAIN REMARK 500 6 A B 8 0.11 SIDE CHAIN REMARK 500 6 U B 10 0.06 SIDE CHAIN REMARK 500 7 G B 7 0.13 SIDE CHAIN REMARK 500 7 A B 8 0.10 SIDE CHAIN REMARK 500 7 G B 9 0.07 SIDE CHAIN REMARK 500 7 U B 10 0.09 SIDE CHAIN REMARK 500 7 C B 12 0.09 SIDE CHAIN REMARK 500 8 A B 8 0.10 SIDE CHAIN REMARK 500 8 U B 10 0.08 SIDE CHAIN REMARK 500 9 G B 9 0.06 SIDE CHAIN REMARK 500 9 U B 10 0.08 SIDE CHAIN REMARK 500 9 C B 12 0.08 SIDE CHAIN REMARK 500 10 A B 8 0.07 SIDE CHAIN REMARK 500 10 U B 10 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 176D A 1 6 PDB 176D 176D 1 6 DBREF 176D B 7 12 PDB 176D 176D 7 12 SEQRES 1 A 6 GPN APN APN CPN TPN CPN SEQRES 1 B 6 G A G U U C MODRES 176D GPN A 1 DG MODRES 176D APN A 2 DA MODRES 176D APN A 3 DA MODRES 176D CPN A 4 DC MODRES 176D TPN A 5 DT MODRES 176D CPN A 6 DC HET GPN A 1 36 HET APN A 2 33 HET APN A 3 33 HET CPN A 4 31 HET TPN A 5 33 HET CPN A 6 32 HETNAM GPN 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE HETNAM APN 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE HETNAM CPN 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE HETNAM TPN 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE FORMUL 1 GPN C11 H16 N7 O4 1+ FORMUL 1 APN 2(C11 H16 N7 O3 1+) FORMUL 1 CPN 2(C10 H16 N5 O4 1+) FORMUL 1 TPN C11 H17 N4 O5 1+ CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 159 0 6 0 0 0 0 6 0 0 0 2 END