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Title | L-GLUTAMINE RIBOSWITCH BOUND WITH L-GLUTAMINE SOAKED WITH CS | |
Keywords | RIBOSWITCH, L-GLUTAMINE, BOUND-FORM, RNA, RNA BINDING PROTEI COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5DDR | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 61 | 1307 | 0 | |
2 | RNA | B | 61 | 1307 | 0 | |
3 | Protein | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | C | 94 | 752 | 0 |
4 | Protein | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | D | 94 | 757 | 0 |
5 | Protein | L-GLUTAMINE RIBOSWITCH RNA (61-MER) | A | 14 | 0 | 23 |
6 | Protein | L-GLUTAMINE RIBOSWITCH RNA (61-MER) | B | 16 | 0 | 25 |
7 | Ligand | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | C | 1 | 0 | 1 |
8 | Water | 247 | 0 | 247 | ||
total | 588 | 4123 | 296 |
Unit 3 | VAL2 | PRO3 | GLU4 | THR5 | ARG6 | PRO7 | ASN8 | HIS9 | THR10 | ILE11 | TYR12 | ILE13 | ASN14 | ASN15 | LEU16 | ASN17 | GLU18 | LYS19 | ILE20 | LYS21 | LYS22 | ASP23 | GLU24 | LEU25 | LYS26 | LYS27 | SER28 | LEU29 | HIS30 | ALA31 | ILE32 | PHE33 | SER34 | ARG35 | PHE36 | GLY37 | GLN38 | ILE39 | LEU40 | ASP41 | ILE42 | LEU43 | VAL44 | SER45 | ARG46 | SER47 | LEU48 | LYS49 | MET50 | ARG51 | GLY52 | GLN53 | ALA54 | PHE55 | VAL56 | ILE57 | PHE58 | LYS59 | GLU60 | VAL61 | SER62 | SER63 | ALA64 | THR65 | ASN66 | ALA67 | LEU68 | ARG69 | SER70 | MET71 | GLN72 | GLY73 | PHE74 | PRO75 | PHE76 | TYR77 | ASP78 | LYS79 | PRO80 | MET81 | ARG82 | ILE83 | GLN84 | TYR85 | ALA86 | LYS87 | THR88 | ASP89 | SER90 | ASP91 | ILE92 | ILE93 | ALA94 | LYS95 |
Unit 4 | GLU4 | THR5 | ARG6 | PRO7 | ASN8 | HIS9 | THR10 | ILE11 | TYR12 | ILE13 | ASN14 | ASN15 | LEU16 | ASN17 | GLU18 | LYS19 | ILE20 | LYS21 | LYS22 | ASP23 | GLU24 | LEU25 | LYS26 | LYS27 | SER28 | LEU29 | HIS30 | ALA31 | ILE32 | PHE33 | SER34 | ARG35 | PHE36 | GLY37 | GLN38 | ILE39 | LEU40 | ASP41 | ILE42 | LEU43 | VAL44 | SER45 | ARG46 | SER47 | LEU48 | LYS49 | MET50 | ARG51 | GLY52 | GLN53 | ALA54 | PHE55 | VAL56 | ILE57 | PHE58 | LYS59 | GLU60 | VAL61 | SER62 | SER63 | ALA64 | THR65 | ASN66 | ALA67 | LEU68 | ARG69 | SER70 | MET71 | GLN72 | GLY73 | PHE74 | PRO75 | PHE76 | TYR77 | ASP78 | LYS79 | PRO80 | MET81 | ARG82 | ILE83 | GLN84 | TYR85 | ALA86 | LYS87 | THR88 | ASP89 | SER90 | ASP91 | ILE92 | ILE93 | ALA94 | LYS95 | MET96 | LYS97 |
Unit 5 | GLN101 | K102 | K103 | K104 | K105 | MG106 | MG107 | MG108 | MG109 | MG110 | MG111 | CS112 | CS113 | CS114 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit 6 | GLN101 | K102 | K103 | K104 | MG105 | MG106 | MG107 | MG108 | NA109 | NA110 | NA111 | NA112 | CS113 | CS114 | CS115 | CS116 |
Unit 1 | C1 | G2 | U3 | U4 | G5 | A6 | C7 | C8 | C9 | A10 | G11 | G12 | A13 | A14 | A15 | C16 | U17 | G18 | G19 | G20 | C21 | G22 | G23 | A24 | A25 | G26 | U27 | A28 | A29 | G30 | G31 | U32 | C33 | C34 | A35 | U36 | U37 | G38 | C39 | A40 | C41 | U42 | C43 | C44 | G45 | G46 | G47 | C48 | C49 | U50 | G51 | A52 | A53 | G54 | C55 | A56 | A57 | C58 | G59 | C60 | G61 |
Unit 2 | C1 | G2 | U3 | U4 | G5 | A6 | C7 | C8 | C9 | A10 | G11 | G12 | A13 | A14 | A15 | C16 | U17 | G18 | G19 | G20 | C21 | G22 | G23 | A24 | A25 | G26 | U27 | A28 | A29 | G30 | G31 | U32 | C33 | C34 | A35 | U36 | U37 | G38 | C39 | A40 | C41 | U42 | C43 | C44 | G45 | G46 | G47 | C48 | C49 | U50 | G51 | A52 | A53 | G54 | C55 | A56 | A57 | C58 | G59 | C60 | G61 |
Unit 7 | MG101 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Go to | [Image Library Home] [Helix Analysis Home] [Image Library Entry] [Helix Analysis Entry] |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |