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Sequence, Chains, Units

Title CRYSTAL STRUCTURE OF THE IN VITRO TRANSCRIBED G. KAUSTOPHILU
Keywords RNA-RNA COMPLEX, BASE STACKING, T-LOOP, RNA BINDING, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4MGM     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 63 1347 0
2  RNA    B 63 1347 0
3  Ligand   TRNA GLYCINE  A 5 0 5
4  Ligand   TRNA GLYCINE  B 9 0 9
total       140 2694 14

Nucleic acids
Unit 1   G1 C2 G3 G4 A5 A6 G7 U8 A9 G10 U11 U12 C13 A14 G15 U16 G17 G18 U19 A20 G21 A22 A23 C24 A25 C26 C27 A28 C29 C30 G38 G39 U40 G41 G42 G45 U46 C47 G48 C49 G50 G51 G52 U53 U54 C55 G56 A57 G58 U59 C60 C61 C62 G63 U64 C65 U66 U67 C68 C69 G70 C71 U72
Unit 2   G1 C2 G3 G4 A5 A6 G7 U8 A9 G10 U11 U12 C13 A14 G15 U16 G17 G18 U19 A20 G21 A22 A23 C24 A25 C26 C27 A28 C29 C30 G38 G39 U40 G41 G42 G45 U46 C47 G48 C49 G50 G51 G52 U53 U54 C55 G56 A57 G58 U59 C60 C61 C62 G63 U64 C65 U66 U67 C68 C69 G70 C71 U72

Ligands
Unit 3   MG101 MG102 MG103 MG104 MG105
Unit 4   MG101 MG102 MG103 MG104 MG105 MG106 MG107 MG108 MG109

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany