JenaLib Home    
[Image Library Home]     [Helix Analysis Home]     [Image Library Entry]     [Helix Analysis Entry]   

Sequence, Chains, Units

Title STRUCTURAL BASIS FOR MARBURG VIRUS VP35 MEDIATE IMMUNE EVASI MECHANISMS
Keywords PROTEIN-RNA COMPLEX, VP35, IFN INHIBITOR, RNA BINDING PROTEI INTERFERON ANTAGONISM, DOUBLE STRANDED RNA, TRANSCRIPTION, PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4GHL     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    E 18 379 0
2  RNA    F 18 379 0
3  Protein   POLYMERASE COFACTOR VP35  A 132 1027 0
4  Protein   POLYMERASE COFACTOR VP35  B 122 943 0
5  Protein   POLYMERASE COFACTOR VP35  C 122 943 0
6  Protein   POLYMERASE COFACTOR VP35  D 122 943 0
7  Ligand   SHORT PALINDROMIC RNA AGACAGCAUAUGCUGUCU  E 3 0 3
8  Ligand   SHORT PALINDROMIC RNA AGACAGCAUAUGCUGUCU  F 3 0 3
9  Ligand   POLYMERASE COFACTOR VP35  A 3 0 9
10  Ligand   POLYMERASE COFACTOR VP35  B 5 0 8
11  Ligand   POLYMERASE COFACTOR VP35  C 4 0 7
12  Ligand   POLYMERASE COFACTOR VP35  D 1 0 1
13 Water     379 0 379
total       932 4614 410
Proteins
Unit 3   HIS198 MET199 GLU200 GLU201 THR202 PHE203 SER204 LYS205 PRO206 ASN207 LEU208 SER209 ALA210 LYS211 ASP212 LEU213 ALA214 LEU215 LEU216 LEU217 PHE218 THR219 HIS220 LEU221 PRO222 GLY223 ASN224 ASN225 THR226 PRO227 PHE228 HIS229 ILE230 LEU231 ALA232 GLN233 VAL234 LEU235 SER236 LYS237 ILE238 ALA239 TYR240 LYS241 SER242 GLY243 LYS244 SER245 GLY246 ALA247 PHE248 LEU249 ASP250 ALA251 PHE252 HIS253 GLN254 ILE255 LEU256 SER257 GLU258 GLY259 GLU260 ASN261 ALA262 GLN263 ALA264 ALA265 LEU266 THR267 ARG268 LEU269 SER270 ARG271 THR272 PHE273 ASP274 ALA275 PHE276 MET277 GLY278 VAL279 VAL280 PRO281 PRO282 VAL283 ILE284 ARG285 VAL286 LYS287 ASN288 PHE289 GLN290 THR291 VAL292 PRO293 ARG294 PRO295 CYS296 GLN297 LYS298 SER299 LEU300 ARG301 ALA302 VAL303 PRO304 PRO305 ASN306 PRO307 THR308 ILE309 ASP310 LYS311 GLY312 TRP313 VAL314 CYS315 VAL316 TYR317 SER318 SER319 GLU320 GLN321 GLY322 GLU323 THR324 ARG325 ALA326 LEU327 LYS328 ILE329
Unit 4   LEU208 SER209 ALA210 LYS211 ASP212 LEU213 ALA214 LEU215 LEU216 LEU217 PHE218 THR219 HIS220 LEU221 PRO222 GLY223 ASN224 ASN225 THR226 PRO227 PHE228 HIS229 ILE230 LEU231 ALA232 GLN233 VAL234 LEU235 SER236 LYS237 ILE238 ALA239 TYR240 LYS241 SER242 GLY243 LYS244 SER245 GLY246 ALA247 PHE248 LEU249 ASP250 ALA251 PHE252 HIS253 GLN254 ILE255 LEU256 SER257 GLU258 GLY259 GLU260 ASN261 ALA262 GLN263 ALA264 ALA265 LEU266 THR267 ARG268 LEU269 SER270 ARG271 THR272 PHE273 ASP274 ALA275 PHE276 MET277 GLY278 VAL279 VAL280 PRO281 PRO282 VAL283 ILE284 ARG285 VAL286 LYS287 ASN288 PHE289 GLN290 THR291 VAL292 PRO293 ARG294 PRO295 CYS296 GLN297 LYS298 SER299 LEU300 ARG301 ALA302 VAL303 PRO304 PRO305 ASN306 PRO307 THR308 ILE309 ASP310 LYS311 GLY312 TRP313 VAL314 CYS315 VAL316 TYR317 SER318 SER319 GLU320 GLN321 GLY322 GLU323 THR324 ARG325 ALA326 LEU327 LYS328 ILE329
Unit 5   LEU208 SER209 ALA210 LYS211 ASP212 LEU213 ALA214 LEU215 LEU216 LEU217 PHE218 THR219 HIS220 LEU221 PRO222 GLY223 ASN224 ASN225 THR226 PRO227 PHE228 HIS229 ILE230 LEU231 ALA232 GLN233 VAL234 LEU235 SER236 LYS237 ILE238 ALA239 TYR240 LYS241 SER242 GLY243 LYS244 SER245 GLY246 ALA247 PHE248 LEU249 ASP250 ALA251 PHE252 HIS253 GLN254 ILE255 LEU256 SER257 GLU258 GLY259 GLU260 ASN261 ALA262 GLN263 ALA264 ALA265 LEU266 THR267 ARG268 LEU269 SER270 ARG271 THR272 PHE273 ASP274 ALA275 PHE276 MET277 GLY278 VAL279 VAL280 PRO281 PRO282 VAL283 ILE284 ARG285 VAL286 LYS287 ASN288 PHE289 GLN290 THR291 VAL292 PRO293 ARG294 PRO295 CYS296 GLN297 LYS298 SER299 LEU300 ARG301 ALA302 VAL303 PRO304 PRO305 ASN306 PRO307 THR308 ILE309 ASP310 LYS311 GLY312 TRP313 VAL314 CYS315 VAL316 TYR317 SER318 SER319 GLU320 GLN321 GLY322 GLU323 THR324 ARG325 ALA326 LEU327 LYS328 ILE329
Unit 6   LEU208 SER209 ALA210 LYS211 ASP212 LEU213 ALA214 LEU215 LEU216 LEU217 PHE218 THR219 HIS220 LEU221 PRO222 GLY223 ASN224 ASN225 THR226 PRO227 PHE228 HIS229 ILE230 LEU231 ALA232 GLN233 VAL234 LEU235 SER236 LYS237 ILE238 ALA239 TYR240 LYS241 SER242 GLY243 LYS244 SER245 GLY246 ALA247 PHE248 LEU249 ASP250 ALA251 PHE252 HIS253 GLN254 ILE255 LEU256 SER257 GLU258 GLY259 GLU260 ASN261 ALA262 GLN263 ALA264 ALA265 LEU266 THR267 ARG268 LEU269 SER270 ARG271 THR272 PHE273 ASP274 ALA275 PHE276 MET277 GLY278 VAL279 VAL280 PRO281 PRO282 VAL283 ILE284 ARG285 VAL286 LYS287 ASN288 PHE289 GLN290 THR291 VAL292 PRO293 ARG294 PRO295 CYS296 GLN297 LYS298 SER299 LEU300 ARG301 ALA302 VAL303 PRO304 PRO305 ASN306 PRO307 THR308 ILE309 ASP310 LYS311 GLY312 TRP313 VAL314 CYS315 VAL316 TYR317 SER318 SER319 GLU320 GLN321 GLY322 GLU323 THR324 ARG325 ALA326 LEU327 LYS328 ILE329
Nucleic acids
Unit 1   A1 G2 A3 C4 A5 G6 C7 A8 U9 A10 U11 G12 C13 U14 G15 U16 C17 U18
Unit 2   A1 G2 A3 C4 A5 G6 C7 A8 U9 A10 U11 G12 C13 U14 G15 U16 C17 U18
Ligands
Unit 7   MG101 MG102 MG103
Unit 8   MG101 MG102 MG103
Unit 9   MG401 EDO402 EDO403
Unit 10   MG401 CL402 CL403 CL404 EDO405
Unit 11   MG401 MG402 CL403 EDO404
Unit 12   MG401
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Helix Analysis Home]    [Image Library Entry]    [Helix Analysis Entry]   
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany