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Sequence, Chains, Units

Title CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING SITE I WITH SISOMICIN (P21212 FORM)
Keywords DECORDING, RIBOSOME, RNA-ANTIBIOTIC COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4F8V     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 21 450 0
2  RNA    B 21 450 0
3  Ligand   RNA (5'- R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*C 3')  A 1 0 31
4  Ligand   RNA (5'- R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*C 3')  B 1 0 31
5 Water     3 0 3
total       47 900 65

Nucleic acids
Unit 1   G3 C4 G5 U6 C7 A8 C9 A10 C11 C12 G13 G14 U15 G16 A17 A18 G19 U20 C21 G22 C23
Unit 2   G26 C27 G28 U29 C30 A31 C32 A33 C34 C35 G36 G37 U38 G39 A40 A41 G42 U43 C44 G45 C46

Ligands
Unit 3   SIS101
Unit 4   SIS101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany