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Sequence, Chains, Units

Title CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING SITE I WITH SYNTHETIC AMINOGLYCOSIDE WITH F-HABA GROUP
Keywords RIBOSOMAL RNA, AMINOGLYCOSIDE, RNA-ANTIBIOTIC COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3WRU     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 21 450 0
2  RNA    B 21 450 0
3  Ligand   RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP C)-3')  A 1 0 46
4  Ligand   RNA (5'- R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP C)-3')  B 2 0 47
5 Water     54 0 54
total       99 900 147

Nucleic acids
Unit 1   G3 C4 G5 U6 C7 A8 C9 G10 C11 C12 G13 G14 C15 G16 A17 A18 G19 U20 C21 G22 C23
Unit 2   G26 C27 G28 U29 C30 A31 C32 G33 C34 C35 G36 G37 C38 G39 A40 A41 G42 U43 C44 G45 C46

Ligands
Unit 3   SJP101
Unit 4   SJP101 K102

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany