JenaLib Home    
[Image Library Home]     [Helix Analysis Home]     [Image Library Entry]     [Helix Analysis Entry]   

Sequence, Chains, Units

Title CRYSTAL STRUCTURE OF THE TRIPLET REPEAT IN MYOTONIC DYSTROPH HETEROGENEOUS 1X1 NUCLEOTIDE UU INTERNAL LOOP CONFORMATIONS
Keywords CUG REPEAT RNA, A-FORM RNA, MYOTONIC DYSTROPHY, INTERNAL LOO
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3SYW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 19 571 0
2  RNA    B 19 560 0
3  Ligand    A 1 0 5
4  Ligand    B 1 0 5
5 Water     176 0 176
total       216 1131 186

Nucleic acids
Unit 1   U1 U2 G3 G4 G5 C6 C7 U8 G9 C10 U11 G12 C13 U14 G15 G16 U17 C18 C19
Unit 2   U1 U2 G3 G4 G5 C6 C7 U8 G9 C10 U11 G12 C13 U14 G15 G16 U17 C18 C19

Ligands
Unit 3   PO420
Unit 4   PO420

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Helix Analysis Home]    [Image Library Entry]    [Helix Analysis Entry]   

Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany