| [Image Library Home] [Helix Analysis Home] [Image Library Entry] [Helix Analysis Entry] |
| |
|
| Title | CATION-DEPENDENT SELF-CLEAVAGE ACTIVITY IN THE DUPLEX FORM OF THE SUBTYPE-B HIV-1 RNA DIMERIZATION INITIATION SITE | |
| Keywords | HIV-1, RNA, METAL IONS, CATALYTIC RNA | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 3FAR | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | RNA | A | 23 | 491 | 0 | |
| 2 | RNA | B | 23 | 491 | 0 | |
| 3 | Ligand | RNA (5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3') | A | 1 | 0 | 1 |
| 4 | Ligand | RNA (5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3') | B | 4 | 0 | 4 |
| 5 | Water | 46 | 0 | 46 | ||
| total | 97 | 982 | 51 |
| Unit 1 | C1 | U2 | U3 | G4 | C5 | U6 | G7 | A8 | A9 | G10 | C11 | G12 | C13 | G14 | C15 | A16 | C17 | G18 | G19 | C20 | A21 | A22 | G23 |
| Unit 2 | C1 | U2 | U3 | G4 | C5 | U6 | G7 | A8 | A9 | G10 | C11 | G12 | C13 | G14 | C15 | A16 | C17 | G18 | G19 | C20 | A21 | A22 | G23 |
| Unit 3 | CO24 | |||
| Unit 4 | K24 | K25 | K26 | CO27 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
| Go to | [Image Library Home] [Helix Analysis Home] [Image Library Entry] [Helix Analysis Entry] |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |