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Title | STRUCTURE OF A HUMAN PRP31-15.5K-U4 SNRNA COMPLEX | |
Keywords | RNA-PROTEIN COMPLEX, RIBONUCLEOPROTEIN PARTICLE (RNP), PRE-M SPLICING, U4/U6 DI-SNRNA, U4/U6 DI-SNRNP, HIERARCHICAL ASSE DOMAIN, RNP-BINDING DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2OZB | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | C | 33 | 703 | 0 | |
2 | RNA | F | 33 | 703 | 0 | |
3 | Protein | U4/U6.U5 TRI-SNRNP 15.5 KDA PROTEIN | A | 126 | 977 | 0 |
4 | Protein | U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31 | B | 239 | 1876 | 0 |
5 | Protein | U4/U6.U5 TRI-SNRNP 15.5 KDA PROTEIN | D | 125 | 968 | 0 |
6 | Protein | U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31 | E | 240 | 1886 | 0 |
7 | Ligand | U4/U6.U5 TRI-SNRNP 15.5 KDA PROTEIN | A | 1 | 0 | 1 |
8 | Ligand | U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31 | B | 1 | 0 | 1 |
9 | Ligand | U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31 | E | 1 | 0 | 1 |
10 | Water | 228 | 0 | 228 | ||
total | 1027 | 7113 | 231 |
Unit 3 | GLU3 | ALA4 | ASP5 | VAL6 | ASN7 | PRO8 | LYS9 | ALA10 | TYR11 | PRO12 | LEU13 | ALA14 | ASP15 | ALA16 | HIS17 | LEU18 | THR19 | LYS20 | LYS21 | LEU22 | LEU23 | ASP24 | LEU25 | VAL26 | GLN27 | GLN28 | SER29 | CYS30 | ASN31 | TYR32 | LYS33 | GLN34 | LEU35 | ARG36 | LYS37 | GLY38 | ALA39 | ASN40 | GLU41 | ALA42 | THR43 | LYS44 | THR45 | LEU46 | ASN47 | ARG48 | GLY49 | ILE50 | SER51 | GLU52 | PHE53 | ILE54 | VAL55 | MET56 | ALA57 | ALA58 | ASP59 | ALA60 | GLU61 | PRO62 | LEU63 | GLU64 | ILE65 | ILE66 | LEU67 | HIS68 | LEU69 | PRO70 | LEU71 | LEU72 | CYS73 | GLU74 | ASP75 | LYS76 | ASN77 | VAL78 | PRO79 | TYR80 | VAL81 | PHE82 | VAL83 | ARG84 | SER85 | LYS86 | GLN87 | ALA88 | LEU89 | GLY90 | ARG91 | ALA92 | CYS93 | GLY94 | VAL95 | SER96 | ARG97 | PRO98 | VAL99 | ILE100 | ALA101 | CYS102 | SER103 | VAL104 | THR105 | ILE106 | LYS107 | GLU108 | GLY109 | SER110 | GLN111 | LEU112 | LYS113 | GLN114 | GLN115 | ILE116 | GLN117 | SER118 | ILE119 | GLN120 | GLN121 | SER122 | ILE123 | GLU124 | ARG125 | LEU126 | LEU127 | VAL128 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit 4 | GLU85 | ALA86 | ALA87 | PRO88 | GLU89 | TYR90 | ARG91 | VAL92 | ILE93 | VAL94 | ASP95 | ALA96 | ASN97 | ASN98 | LEU99 | THR100 | VAL101 | GLU102 | ILE103 | GLU104 | ASN105 | GLU106 | LEU107 | ASN108 | ILE109 | ILE110 | HIS111 | LYS112 | PHE113 | ILE114 | ARG115 | ASP116 | LYS117 | TYR118 | SER119 | LYS120 | ARG121 | PHE122 | PRO123 | GLU124 | LEU125 | GLU126 | SER127 | LEU128 | VAL129 | PRO130 | ASN131 | ALA132 | LEU133 | ASP134 | TYR135 | ILE136 | ARG137 | THR138 | VAL139 | LYS140 | GLU141 | LEU142 | GLY143 | ASN144 | SER145 | LEU146 | ASP147 | LYS148 | CYS149 | LYS150 | ASN151 | ASN152 | GLU153 | ASN154 | LEU155 | GLN156 | GLN157 | ILE158 | LEU159 | THR160 | ASN161 | ALA162 | THR163 | ILE164 | MET165 | VAL166 | VAL167 | SER168 | VAL169 | THR170 | ALA171 | SER172 | THR173 | THR174 | GLN175 | GLY176 | GLN177 | GLN178 | LEU179 | SER180 | GLU181 | GLU182 | GLU183 | LEU184 | GLU185 | ARG186 | LEU187 | GLU188 | GLU189 | ALA190 | CYS191 | ASP192 | MET193 | ALA194 | LEU195 | GLU196 | LEU197 | ASN198 | ALA199 | SER200 | LYS201 | HIS202 | ARG203 | ILE204 | TYR205 | GLU206 | TYR207 | VAL208 | GLU209 | SER210 | ARG211 | MET212 | SER213 | PHE214 | ILE215 | ALA216 | PRO217 | ASN218 | LEU219 | SER220 | ILE221 | ILE222 | ILE223 | GLY224 | ALA225 | SER226 | THR227 | ALA228 | ALA229 | LYS230 | ILE231 | MET232 | GLY233 | VAL234 | ALA235 | GLY236 | GLY237 | LEU238 | THR239 | ASN240 | LEU241 | SER242 | LYS243 | MET244 | PRO245 | ALA246 | CYS247 | ASN248 | ILE249 | MET250 | LEU251 | LEU252 | GLY253 | ALA254 | GLN255 | SER266 | VAL267 | LEU268 | PRO269 | HIS270 | THR271 | GLY272 | TYR273 | ILE274 | TYR275 | HIS276 | SER277 | ASP278 | ILE279 | VAL280 | GLN281 | SER282 | LEU283 | PRO284 | PRO285 | ASP286 | LEU287 | ARG288 | ARG289 | LYS290 | ALA291 | ALA292 | ARG293 | LEU294 | VAL295 | ALA296 | ALA297 | LYS298 | CYS299 | THR300 | LEU301 | ALA302 | ALA303 | ARG304 | VAL305 | ASP306 | SER307 | PHE308 | HIS309 | GLU310 | SER311 | THR312 | GLU313 | GLY314 | LYS315 | VAL316 | GLY317 | TYR318 | GLU319 | LEU320 | LYS321 | ASP322 | GLU323 | ILE324 | GLU325 | ARG326 | LYS327 | PHE328 | ASP329 | LYS330 | TRP331 | GLN332 | GLU333 | |
Unit 5 | ALA4 | ASP5 | VAL6 | ASN7 | PRO8 | LYS9 | ALA10 | TYR11 | PRO12 | LEU13 | ALA14 | ASP15 | ALA16 | HIS17 | LEU18 | THR19 | LYS20 | LYS21 | LEU22 | LEU23 | ASP24 | LEU25 | VAL26 | GLN27 | GLN28 | SER29 | CYS30 | ASN31 | TYR32 | LYS33 | GLN34 | LEU35 | ARG36 | LYS37 | GLY38 | ALA39 | ASN40 | GLU41 | ALA42 | THR43 | LYS44 | THR45 | LEU46 | ASN47 | ARG48 | GLY49 | ILE50 | SER51 | GLU52 | PHE53 | ILE54 | VAL55 | MET56 | ALA57 | ALA58 | ASP59 | ALA60 | GLU61 | PRO62 | LEU63 | GLU64 | ILE65 | ILE66 | LEU67 | HIS68 | LEU69 | PRO70 | LEU71 | LEU72 | CYS73 | GLU74 | ASP75 | LYS76 | ASN77 | VAL78 | PRO79 | TYR80 | VAL81 | PHE82 | VAL83 | ARG84 | SER85 | LYS86 | GLN87 | ALA88 | LEU89 | GLY90 | ARG91 | ALA92 | CYS93 | GLY94 | VAL95 | SER96 | ARG97 | PRO98 | VAL99 | ILE100 | ALA101 | CYS102 | SER103 | VAL104 | THR105 | ILE106 | LYS107 | GLU108 | GLY109 | SER110 | GLN111 | LEU112 | LYS113 | GLN114 | GLN115 | ILE116 | GLN117 | SER118 | ILE119 | GLN120 | GLN121 | SER122 | ILE123 | GLU124 | ARG125 | LEU126 | LEU127 | VAL128 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit 6 | GLU85 | ALA86 | ALA87 | PRO88 | GLU89 | TYR90 | ARG91 | VAL92 | ILE93 | VAL94 | ASP95 | ALA96 | ASN97 | ASN98 | LEU99 | THR100 | VAL101 | GLU102 | ILE103 | GLU104 | ASN105 | GLU106 | LEU107 | ASN108 | ILE109 | ILE110 | HIS111 | LYS112 | PHE113 | ILE114 | ARG115 | ASP116 | LYS117 | TYR118 | SER119 | LYS120 | ARG121 | PHE122 | PRO123 | GLU124 | LEU125 | GLU126 | SER127 | LEU128 | VAL129 | PRO130 | ASN131 | ALA132 | LEU133 | ASP134 | TYR135 | ILE136 | ARG137 | THR138 | VAL139 | LYS140 | GLU141 | LEU142 | GLY143 | ASN144 | SER145 | LEU146 | ASP147 | LYS148 | CYS149 | LYS150 | ASN151 | ASN152 | GLU153 | ASN154 | LEU155 | GLN156 | GLN157 | ILE158 | LEU159 | THR160 | ASN161 | ALA162 | THR163 | ILE164 | MET165 | VAL166 | VAL167 | SER168 | VAL169 | THR170 | ALA171 | SER172 | THR173 | THR174 | GLN175 | GLY176 | GLN177 | GLN178 | LEU179 | SER180 | GLU181 | GLU182 | GLU183 | LEU184 | GLU185 | ARG186 | LEU187 | GLU188 | GLU189 | ALA190 | CYS191 | ASP192 | MET193 | ALA194 | LEU195 | GLU196 | LEU197 | ASN198 | ALA199 | SER200 | LYS201 | HIS202 | ARG203 | ILE204 | TYR205 | GLU206 | TYR207 | VAL208 | GLU209 | SER210 | ARG211 | MET212 | SER213 | PHE214 | ILE215 | ALA216 | PRO217 | ASN218 | LEU219 | SER220 | ILE221 | ILE222 | ILE223 | GLY224 | ALA225 | SER226 | THR227 | ALA228 | ALA229 | LYS230 | ILE231 | MET232 | GLY233 | VAL234 | ALA235 | GLY236 | GLY237 | LEU238 | THR239 | ASN240 | LEU241 | SER242 | LYS243 | MET244 | PRO245 | ALA246 | CYS247 | ASN248 | ILE249 | MET250 | LEU251 | LEU252 | GLY253 | ALA254 | GLN255 | ARG256 | SER266 | VAL267 | LEU268 | PRO269 | HIS270 | THR271 | GLY272 | TYR273 | ILE274 | TYR275 | HIS276 | SER277 | ASP278 | ILE279 | VAL280 | GLN281 | SER282 | LEU283 | PRO284 | PRO285 | ASP286 | LEU287 | ARG288 | ARG289 | LYS290 | ALA291 | ALA292 | ARG293 | LEU294 | VAL295 | ALA296 | ALA297 | LYS298 | CYS299 | THR300 | LEU301 | ALA302 | ALA303 | ARG304 | VAL305 | ASP306 | SER307 | PHE308 | HIS309 | GLU310 | SER311 | THR312 | GLU313 | GLY314 | LYS315 | VAL316 | GLY317 | TYR318 | GLU319 | LEU320 | LYS321 | ASP322 | GLU323 | ILE324 | GLU325 | ARG326 | LYS327 | PHE328 | ASP329 | LYS330 | TRP331 | GLN332 | GLU333 |
Unit 1 | A20 | U21 | C22 | G23 | U24 | A25 | G26 | C27 | C28 | A29 | A30 | U31 | G32 | A33 | G34 | G35 | U36 | U37 | U38 | A39 | U40 | C41 | C42 | G43 | A44 | G45 | G46 | C47 | G48 | C49 | G50 | A51 | U52 |
Unit 2 | A20 | U21 | C22 | G23 | U24 | A25 | G26 | C27 | C28 | A29 | A30 | U31 | G32 | A33 | G34 | G35 | U36 | U37 | U38 | A39 | U40 | C41 | C42 | G43 | A44 | G45 | G46 | C47 | G48 | C49 | G50 | A51 | U52 |
Unit 7 | CA503 |
Unit 8 | CA502 |
Unit 9 | CA501 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Go to | [Image Library Home] [Helix Analysis Home] [Image Library Entry] [Helix Analysis Entry] |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |