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Sequence, Chains, Units

Title CRYSTAL STRUCTURE OF THE DUPLEX FORM OF THE HIV-1(LAI) RNA DIMERIZATION INITIATION SITE MN SOAKED
Keywords HIV-1, DIS, RNA, DIMERIZATION, METAL IONS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2OJ0     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 23 491 0
2  RNA    B 23 491 0
3  Ligand   5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*C *GP*CP*AP*AP*G)-3'  A 5 0 5
4  Ligand   5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*C *GP*CP*AP*AP*G)-3'  B 6 0 6
5 Water     149 0 149
total       206 982 160
Nucleic acids
Unit 1   C1 U2 U3 G4 C5 U6 G7 A8 A9 G10 C11 G12 C13 G14 C15 A16 C17 G18 G19 C20 A21 A22 G23
Unit 2   C1 U2 U3 G4 C5 U6 G7 A8 A9 G10 C11 G12 C13 G14 C15 A16 C17 G18 G19 C20 A21 A22 G23
Ligands
Unit 3   K201 K203 MN205 NA262 NA315
Unit 4   K202 MN204 MN206 K207 K208 NA209
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany