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Sequence, Chains, Units

Title CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA
Keywords ARGONAUTE, SIRNA, RISC LOADING COMPLEX, RNA BINDING PROTEIN- COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2F8S     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 22 465 0
2  RNA    D 22 465 0
3  Protein   ARGONAUTE PROTEIN  A 704 5864 0
4  Protein   ARGONAUTE PROTEIN  B 704 5864 0
5 Water     30 0 30
total       1482 12658 30
Proteins
Unit 3   LYS3 GLU4 ALA5 LEU6 LEU7 ASN8 LEU9 TYR10 ARG11 ILE12 GLU13 TYR14 ARG15 PRO16 LYS17 ASP18 THR19 THR20 PHE21 THR22 VAL23 PHE24 LYS25 PRO26 THR27 HIS28 GLU29 ILE30 GLN31 LYS32 GLU33 LYS34 LEU35 ASN36 LYS37 VAL38 ARG39 TRP40 ARG41 VAL42 PHE43 LEU44 GLN45 THR46 GLY47 LEU48 PRO49 THR50 PHE51 ARG52 ARG53 GLU54 ASP55 GLU56 PHE57 TRP58 CYS59 ALA60 GLY61 LYS62 VAL63 GLU64 LYS65 ASP66 THR67 LEU68 TYR69 LEU70 THR71 LEU72 SER73 ASN74 GLY75 GLU76 ILE77 VAL78 GLU79 LEU80 LYS81 ARG82 VAL83 GLY84 GLU85 GLU86 GLU87 PHE88 ARG89 GLY90 PHE91 GLN92 ASN93 GLU94 ARG95 GLU96 CYS97 GLN98 GLU99 LEU100 PHE101 ARG102 ASP103 PHE104 LEU105 THR106 LYS107 THR108 LYS109 VAL110 LYS111 ASP112 LYS113 PHE114 ILE115 SER116 ASP117 PHE118 TYR119 LYS120 LYS121 PHE122 ARG123 ASP124 LYS125 ILE126 THR127 VAL128 GLN129 GLY130 LYS131 ASN132 ARG133 LYS134 ILE135 ALA136 LEU137 ILE138 PRO139 GLU140 VAL141 ASN142 GLU143 LYS144 VAL145 LEU146 LYS147 SER148 GLU149 GLU150 GLY151 TYR152 PHE153 LEU154 LEU155 HIS156 LEU157 ASP158 LEU159 LYS160 PHE161 ARG162 ILE163 GLN164 PRO165 PHE166 GLU167 THR168 LEU169 GLN170 THR171 LEU172 LEU173 GLU174 ARG175 ASN176 ASP177 PHE178 ASN179 PRO180 LYS181 ARG182 ILE183 ARG184 VAL185 LYS186 PRO187 ILE188 GLY189 ILE190 ASP191 PHE192 VAL193 GLY194 ARG195 VAL196 GLN197 ASP198 VAL199 PHE200 LYS201 ALA202 LYS203 GLU204 LYS205 GLY206 GLU207 GLU208 PHE209 PHE210 ARG211 LEU212 CYS213 MET214 GLU215 ARG216 SER217 THR218 HIS219 LYS220 SER221 SER222 LYS223 LYS224 ALA225 TRP226 GLU227 GLU228 LEU229 LEU230 LYS231 ASN232 ARG233 GLU234 LEU235 ARG236 GLU237 LYS238 ALA239 PHE240 LEU241 VAL242 VAL243 LEU244 GLU245 LYS246 GLY247 TYR248 THR249 TYR250 PRO251 ALA252 THR253 ILE254 LEU255 LYS256 PRO257 VAL258 LEU259 THR260 TYR261 GLU262 ASN263 LEU264 GLU265 ASP266 GLU267 GLU268 ARG269 ASN270 GLU271 VAL272 ALA273 ASP274 ILE275 VAL276 ARG277 MET278 GLU279 PRO280 GLY281 LYS282 ARG283 LEU284 ASN285 LEU286 ILE287 ARG288 TYR289 ILE290 LEU291 ARG292 ARG293 TYR294 VAL295 LYS296 ALA297 LEU298 ARG299 ASP300 TYR301 GLY302 TRP303 TYR304 ILE305 SER306 PRO307 GLU308 GLU309 GLU310 ARG311 ALA312 LYS313 GLY314 LYS315 LEU316 ASN317 PHE318 LYS319 ASP320 THR321 VAL322 LEU323 ASP324 ALA325 LYS326 GLY327 LYS328 ASN329 THR330 LYS331 VAL332 ILE333 THR334 ASN335 LEU336 ARG337 LYS338 PHE339 LEU340 GLU341 LEU342 CYS343 ARG344 PRO345 PHE346 VAL347 LYS348 LYS349 ASP350 VAL351 LEU352 SER353 VAL354 GLU355 ILE356 ILE357 SER358 VAL359 SER360 VAL361 TYR362 LYS363 LYS364 LEU365 GLU366 TRP367 ARG368 LYS369 GLU370 GLU371 PHE372 LEU373 LYS374 GLU375 LEU376 ILE377 ASN378 PHE379 LEU380 LYS381 ASN382 LYS383 GLY384 ILE385 LYS386 LEU387 LYS388 ILE389 LYS390 GLY391 LYS392 SER393 LEU394 ILE395 LEU396 ALA397 GLN398 THR399 ARG400 GLU401 GLU402 ALA403 LYS404 GLU405 LYS406 LEU407 ILE408 PRO409 VAL410 ILE411 ASN412 LYS413 ILE414 LYS415 ASP416 VAL417 ASP418 LEU419 VAL420 ILE421 VAL422 PHE423 LEU424 GLU425 GLU426 TYR427 PRO428 LYS429 VAL430 ASP431 PRO432 TYR433 LYS434 SER435 PHE436 LEU437 LEU438 TYR439 ASP440 PHE441 VAL442 LYS443 ARG444 GLU445 LEU446 LEU447 LYS448 LYS449 MET450 ILE451 PRO452 SER453 GLN454 VAL455 ILE456 LEU457 ASN458 ARG459 THR460 LEU461 LYS462 ASN463 GLU464 ASN465 LEU466 LYS467 PHE468 VAL469 LEU470 LEU471 ASN472 VAL473 ALA474 GLU475 GLN476 VAL477 LEU478 ALA479 LYS480 THR481 GLY482 ASN483 ILE484 PRO485 TYR486 LYS487 LEU488 LYS489 GLU490 ILE491 GLU492 GLY493 LYS494 VAL495 ASP496 ALA497 PHE498 VAL499 GLY500 ILE501 ASP502 ILE503 SER504 ARG505 ILE506 THR507 ARG508 ASP509 GLY510 LYS511 THR512 VAL513 ASN514 ALA515 VAL516 ALA517 PHE518 THR519 LYS520 ILE521 PHE522 ASN523 SER524 LYS525 GLY526 GLU527 LEU528 VAL529 ARG530 TYR531 TYR532 LEU533 THR534 SER535 TYR536 PRO537 ALA538 PHE539 GLY540 GLU541 LYS542 LEU543 THR544 GLU545 LYS546 ALA547 ILE548 GLY549 ASP550 VAL551 PHE552 SER553 LEU554 LEU555 GLU556 LYS557 LEU558 GLY559 PHE560 LYS561 LYS562 GLY563 SER564 LYS565 ILE566 VAL567 VAL568 HIS569 ARG570 ASP571 GLY572 ARG573 LEU574 TYR575 ARG576 ASP577 GLU578 VAL579 ALA580 ALA581 PHE582 LYS583 LYS584 TYR585 GLY586 GLU587 LEU588 TYR589 GLY590 TYR591 SER592 LEU593 GLU594 LEU595 LEU596 GLU597 ILE598 ILE599 LYS600 ARG601 ASN602 ASN603 PRO604 ARG605 PHE606 PHE607 SER608 ASN609 GLU610 LYS611 PHE612 ILE613 LYS614 GLY615 TYR616 PHE617 TYR618 LYS619 LEU620 SER621 GLU622 ASP623 SER624 VAL625 ILE626 LEU627 ALA628 THR629 TYR630 ASN631 GLN632 VAL633 TYR634 GLU635 GLY636 THR637 HIS638 GLN639 PRO640 ILE641 LYS642 VAL643 ARG644 LYS645 VAL646 TYR647 GLY648 GLU649 LEU650 PRO651 VAL652 GLU653 VAL654 LEU655 CYS656 SER657 GLN658 ILE659 LEU660 SER661 LEU662 THR663 LEU664 MET665 ASN666 TYR667 SER668 SER669 PHE670 GLN671 PRO672 ILE673 LYS674 LEU675 PRO676 ALA677 THR678 VAL679 HIS680 TYR681 SER682 ASP683 LYS684 ILE685 THR686 LYS687 LEU688 MET689 LEU690 ARG691 GLY692 ILE693 GLU694 PRO695 ILE696 LYS697 LYS698 GLU699 GLY700 ASP701 ILE702 MET703 TYR704 TRP705 LEU706
Unit 4   LYS3 GLU4 ALA5 LEU6 LEU7 ASN8 LEU9 TYR10 ARG11 ILE12 GLU13 TYR14 ARG15 PRO16 LYS17 ASP18 THR19 THR20 PHE21 THR22 VAL23 PHE24 LYS25 PRO26 THR27 HIS28 GLU29 ILE30 GLN31 LYS32 GLU33 LYS34 LEU35 ASN36 LYS37 VAL38 ARG39 TRP40 ARG41 VAL42 PHE43 LEU44 GLN45 THR46 GLY47 LEU48 PRO49 THR50 PHE51 ARG52 ARG53 GLU54 ASP55 GLU56 PHE57 TRP58 CYS59 ALA60 GLY61 LYS62 VAL63 GLU64 LYS65 ASP66 THR67 LEU68 TYR69 LEU70 THR71 LEU72 SER73 ASN74 GLY75 GLU76 ILE77 VAL78 GLU79 LEU80 LYS81 ARG82 VAL83 GLY84 GLU85 GLU86 GLU87 PHE88 ARG89 GLY90 PHE91 GLN92 ASN93 GLU94 ARG95 GLU96 CYS97 GLN98 GLU99 LEU100 PHE101 ARG102 ASP103 PHE104 LEU105 THR106 LYS107 THR108 LYS109 VAL110 LYS111 ASP112 LYS113 PHE114 ILE115 SER116 ASP117 PHE118 TYR119 LYS120 LYS121 PHE122 ARG123 ASP124 LYS125 ILE126 THR127 VAL128 GLN129 GLY130 LYS131 ASN132 ARG133 LYS134 ILE135 ALA136 LEU137 ILE138 PRO139 GLU140 VAL141 ASN142 GLU143 LYS144 VAL145 LEU146 LYS147 SER148 GLU149 GLU150 GLY151 TYR152 PHE153 LEU154 LEU155 HIS156 LEU157 ASP158 LEU159 LYS160 PHE161 ARG162 ILE163 GLN164 PRO165 PHE166 GLU167 THR168 LEU169 GLN170 THR171 LEU172 LEU173 GLU174 ARG175 ASN176 ASP177 PHE178 ASN179 PRO180 LYS181 ARG182 ILE183 ARG184 VAL185 LYS186 PRO187 ILE188 GLY189 ILE190 ASP191 PHE192 VAL193 GLY194 ARG195 VAL196 GLN197 ASP198 VAL199 PHE200 LYS201 ALA202 LYS203 GLU204 LYS205 GLY206 GLU207 GLU208 PHE209 PHE210 ARG211 LEU212 CYS213 MET214 GLU215 ARG216 SER217 THR218 HIS219 LYS220 SER221 SER222 LYS223 LYS224 ALA225 TRP226 GLU227 GLU228 LEU229 LEU230 LYS231 ASN232 ARG233 GLU234 LEU235 ARG236 GLU237 LYS238 ALA239 PHE240 LEU241 VAL242 VAL243 LEU244 GLU245 LYS246 GLY247 TYR248 THR249 TYR250 PRO251 ALA252 THR253 ILE254 LEU255 LYS256 PRO257 VAL258 LEU259 THR260 TYR261 GLU262 ASN263 LEU264 GLU265 ASP266 GLU267 GLU268 ARG269 ASN270 GLU271 VAL272 ALA273 ASP274 ILE275 VAL276 ARG277 MET278 GLU279 PRO280 GLY281 LYS282 ARG283 LEU284 ASN285 LEU286 ILE287 ARG288 TYR289 ILE290 LEU291 ARG292 ARG293 TYR294 VAL295 LYS296 ALA297 LEU298 ARG299 ASP300 TYR301 GLY302 TRP303 TYR304 ILE305 SER306 PRO307 GLU308 GLU309 GLU310 ARG311 ALA312 LYS313 GLY314 LYS315 LEU316 ASN317 PHE318 LYS319 ASP320 THR321 VAL322 LEU323 ASP324 ALA325 LYS326 GLY327 LYS328 ASN329 THR330 LYS331 VAL332 ILE333 THR334 ASN335 LEU336 ARG337 LYS338 PHE339 LEU340 GLU341 LEU342 CYS343 ARG344 PRO345 PHE346 VAL347 LYS348 LYS349 ASP350 VAL351 LEU352 SER353 VAL354 GLU355 ILE356 ILE357 SER358 VAL359 SER360 VAL361 TYR362 LYS363 LYS364 LEU365 GLU366 TRP367 ARG368 LYS369 GLU370 GLU371 PHE372 LEU373 LYS374 GLU375 LEU376 ILE377 ASN378 PHE379 LEU380 LYS381 ASN382 LYS383 GLY384 ILE385 LYS386 LEU387 LYS388 ILE389 LYS390 GLY391 LYS392 SER393 LEU394 ILE395 LEU396 ALA397 GLN398 THR399 ARG400 GLU401 GLU402 ALA403 LYS404 GLU405 LYS406 LEU407 ILE408 PRO409 VAL410 ILE411 ASN412 LYS413 ILE414 LYS415 ASP416 VAL417 ASP418 LEU419 VAL420 ILE421 VAL422 PHE423 LEU424 GLU425 GLU426 TYR427 PRO428 LYS429 VAL430 ASP431 PRO432 TYR433 LYS434 SER435 PHE436 LEU437 LEU438 TYR439 ASP440 PHE441 VAL442 LYS443 ARG444 GLU445 LEU446 LEU447 LYS448 LYS449 MET450 ILE451 PRO452 SER453 GLN454 VAL455 ILE456 LEU457 ASN458 ARG459 THR460 LEU461 LYS462 ASN463 GLU464 ASN465 LEU466 LYS467 PHE468 VAL469 LEU470 LEU471 ASN472 VAL473 ALA474 GLU475 GLN476 VAL477 LEU478 ALA479 LYS480 THR481 GLY482 ASN483 ILE484 PRO485 TYR486 LYS487 LEU488 LYS489 GLU490 ILE491 GLU492 GLY493 LYS494 VAL495 ASP496 ALA497 PHE498 VAL499 GLY500 ILE501 ASP502 ILE503 SER504 ARG505 ILE506 THR507 ARG508 ASP509 GLY510 LYS511 THR512 VAL513 ASN514 ALA515 VAL516 ALA517 PHE518 THR519 LYS520 ILE521 PHE522 ASN523 SER524 LYS525 GLY526 GLU527 LEU528 VAL529 ARG530 TYR531 TYR532 LEU533 THR534 SER535 TYR536 PRO537 ALA538 PHE539 GLY540 GLU541 LYS542 LEU543 THR544 GLU545 LYS546 ALA547 ILE548 GLY549 ASP550 VAL551 PHE552 SER553 LEU554 LEU555 GLU556 LYS557 LEU558 GLY559 PHE560 LYS561 LYS562 GLY563 SER564 LYS565 ILE566 VAL567 VAL568 HIS569 ARG570 ASP571 GLY572 ARG573 LEU574 TYR575 ARG576 ASP577 GLU578 VAL579 ALA580 ALA581 PHE582 LYS583 LYS584 TYR585 GLY586 GLU587 LEU588 TYR589 GLY590 TYR591 SER592 LEU593 GLU594 LEU595 LEU596 GLU597 ILE598 ILE599 LYS600 ARG601 ASN602 ASN603 PRO604 ARG605 PHE606 PHE607 SER608 ASN609 GLU610 LYS611 PHE612 ILE613 LYS614 GLY615 TYR616 PHE617 TYR618 LYS619 LEU620 SER621 GLU622 ASP623 SER624 VAL625 ILE626 LEU627 ALA628 THR629 TYR630 ASN631 GLN632 VAL633 TYR634 GLU635 GLY636 THR637 HIS638 GLN639 PRO640 ILE641 LYS642 VAL643 ARG644 LYS645 VAL646 TYR647 GLY648 GLU649 LEU650 PRO651 VAL652 GLU653 VAL654 LEU655 CYS656 SER657 GLN658 ILE659 LEU660 SER661 LEU662 THR663 LEU664 MET665 ASN666 TYR667 SER668 SER669 PHE670 GLN671 PRO672 ILE673 LYS674 LEU675 PRO676 ALA677 THR678 VAL679 HIS680 TYR681 SER682 ASP683 LYS684 ILE685 THR686 LYS687 LEU688 MET689 LEU690 ARG691 GLY692 ILE693 GLU694 PRO695 ILE696 LYS697 LYS698 GLU699 GLY700 ASP701 ILE702 MET703 TYR704 TRP705 LEU706
Nucleic acids
Unit 1   A1 G2 A3 C4 A5 G6 C7 A8 U9 A10 U11 A12 U13 G14 C15 U16 G17 U18 C19 U20 U21 U22
Unit 2   A1 G2 A3 C4 A5 G6 C7 A8 U9 A10 U11 A12 U13 G14 C15 U16 G17 U18 C19 U20 U21 U22
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany