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Title | CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET) | |
Keywords | LIGASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 2CSX | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | C | 75 | 1603 | 0 | |
2 | RNA | D | 75 | 1603 | 0 | |
3 | Protein | METHIONYL-TRNA SYNTHETASE | A | 464 | 3905 | 0 |
4 | Protein | METHIONYL-TRNA SYNTHETASE | B | 464 | 3905 | 0 |
5 | Water | 42 | 0 | 42 | ||
total | 1120 | 11016 | 42 |
Unit 3 | MET1 | THR2 | LEU3 | MET4 | LYS5 | LYS6 | PHE7 | TYR8 | VAL9 | THR10 | THR11 | PRO12 | ILE13 | TYR14 | TYR15 | VAL16 | ASN17 | ASP18 | VAL19 | PRO20 | HIS21 | LEU22 | GLY23 | HIS24 | ALA25 | TYR26 | THR27 | THR28 | ILE29 | ALA30 | ALA31 | ASP32 | THR33 | ILE34 | ALA35 | ARG36 | TYR37 | TYR38 | ARG39 | LEU40 | ARG41 | ASP42 | TYR43 | ASP44 | VAL45 | PHE46 | PHE47 | LEU48 | THR49 | GLY50 | THR51 | ASP52 | GLU53 | HIS54 | GLY55 | LEU56 | LYS57 | ILE58 | GLN59 | LYS60 | LYS61 | ALA62 | GLU63 | GLU64 | LEU65 | GLY66 | ILE67 | SER68 | PRO69 | LYS70 | GLU71 | LEU72 | VAL73 | ASP74 | ARG75 | ASN76 | ALA77 | GLU78 | ARG79 | PHE80 | LYS81 | LYS82 | LEU83 | TRP84 | GLU85 | PHE86 | LEU87 | LYS88 | ILE89 | GLU90 | TYR91 | THR92 | LYS93 | PHE94 | ILE95 | ARG96 | THR97 | THR98 | ASP99 | PRO100 | TYR101 | HIS102 | VAL103 | LYS104 | PHE105 | VAL106 | GLN107 | LYS108 | VAL109 | PHE110 | GLU111 | GLU112 | CYS113 | TYR114 | LYS115 | ARG116 | GLY117 | ASP118 | ILE119 | TYR120 | LEU121 | GLY122 | GLU123 | TYR124 | LYS158 | GLU159 | PRO160 | SER161 | TYR162 | PHE163 | PHE164 | ARG165 | LEU166 | SER167 | LYS168 | TYR169 | GLN170 | ASP171 | LYS172 | LEU173 | LEU174 | GLU175 | LEU176 | TYR177 | GLU178 | LYS179 | ASN180 | PRO181 | GLU182 | PHE183 | ILE184 | GLN185 | PRO186 | ASP187 | TYR188 | ARG189 | ARG190 | ASN191 | GLU192 | ILE193 | ILE194 | SER195 | PHE196 | VAL197 | LYS198 | GLN199 | GLY200 | LEU201 | LYS202 | ASP203 | LEU204 | SER205 | VAL206 | THR207 | ARG208 | PRO209 | ARG210 | SER211 | ARG212 | VAL213 | LYS214 | TRP215 | GLY216 | ILE217 | PRO218 | VAL219 | PRO220 | PHE221 | ASP222 | PRO223 | GLU224 | HIS225 | THR226 | ILE227 | TYR228 | VAL229 | TRP230 | PHE231 | ASP232 | ALA233 | LEU234 | PHE235 | ASN236 | TYR237 | ILE238 | SER239 | ALA240 | LEU241 | GLU242 | ASP243 | LYS244 | VAL245 | GLU246 | ILE247 | TYR248 | TRP249 | PRO250 | ALA251 | ASP252 | LEU253 | HIS254 | LEU255 | VAL256 | GLY257 | LYS258 | ASP259 | ILE260 | LEU261 | ARG262 | PHE263 | HIS264 | THR265 | VAL266 | TYR267 | TRP268 | PRO269 | ALA270 | PHE271 | LEU272 | MET273 | SER274 | LEU275 | GLY276 | TYR277 | GLU278 | LEU279 | PRO280 | LYS281 | LYS282 | VAL283 | PHE284 | ALA285 | HIS286 | GLY287 | TRP288 | TRP289 | THR290 | VAL291 | GLU292 | GLY293 | LYS294 | LYS295 | MET296 | SER297 | LYS298 | THR299 | LEU300 | GLY301 | ASN302 | VAL303 | VAL304 | ASP305 | PRO306 | TYR307 | GLU308 | VAL309 | VAL310 | GLN311 | GLU312 | TYR313 | GLY314 | LEU315 | ASP316 | GLU317 | VAL318 | ARG319 | TYR320 | PHE321 | LEU322 | LEU323 | ARG324 | GLU325 | VAL326 | PRO327 | PHE328 | GLY329 | GLN330 | ASP331 | GLY332 | ASP333 | PHE334 | SER335 | LYS336 | LYS337 | ALA338 | ILE339 | LEU340 | ASN341 | ARG342 | ILE343 | ASN344 | GLY345 | GLU346 | LEU347 | ALA348 | ASN349 | GLU350 | ILE351 | GLY352 | ASN353 | LEU354 | TYR355 | SER356 | ARG357 | VAL358 | VAL359 | ASN360 | MET361 | ALA362 | HIS363 | LYS364 | PHE365 | LEU366 | GLY367 | GLY368 | GLU369 | VAL370 | SER371 | GLY372 | ALA373 | ARG374 | ASP375 | GLU376 | GLU377 | TYR378 | ALA379 | LYS380 | ILE381 | ALA382 | GLN383 | GLU384 | SER385 | ILE386 | LYS387 | ASN388 | TYR389 | GLU390 | ASN391 | TYR392 | MET393 | GLU394 | LYS395 | VAL396 | ASN397 | PHE398 | TYR399 | LYS400 | ALA401 | ILE402 | GLU403 | GLU404 | ILE405 | LEU406 | LYS407 | PHE408 | THR409 | SER410 | TYR411 | LEU412 | ASN413 | LYS414 | TYR415 | VAL416 | ASP417 | GLU418 | LYS419 | GLN420 | PRO421 | TRP422 | ALA423 | LEU424 | ASN425 | LYS426 | GLU427 | ARG428 | LYS429 | LYS430 | GLU431 | GLU432 | LEU433 | GLN434 | LYS435 | VAL436 | LEU437 | TYR438 | ALA439 | LEU440 | VAL441 | ASP442 | GLY443 | LEU444 | PHE445 | VAL446 | LEU447 | THR448 | HIS449 | LEU450 | LEU451 | TYR452 | PRO453 | ILE454 | THR455 | PRO456 | ASN457 | LYS458 | MET459 | LYS460 | GLU461 | ALA462 | LEU463 | GLN464 | MET465 | LEU466 | GLY467 | GLU468 | LYS469 | GLU470 | PHE471 | LEU472 | LYS473 | GLU474 | LEU475 | LYS476 | PRO477 | TYR478 | SER479 | LYS480 | ASN481 | THR482 | TYR483 | LYS484 | LEU485 | GLY486 | GLU487 | ARG488 | LYS489 | ILE490 | LEU491 | PHE492 | PRO493 | LYS494 | ARG495 | GLU496 | GLY497 |
Unit 4 | MET1 | THR2 | LEU3 | MET4 | LYS5 | LYS6 | PHE7 | TYR8 | VAL9 | THR10 | THR11 | PRO12 | ILE13 | TYR14 | TYR15 | VAL16 | ASN17 | ASP18 | VAL19 | PRO20 | HIS21 | LEU22 | GLY23 | HIS24 | ALA25 | TYR26 | THR27 | THR28 | ILE29 | ALA30 | ALA31 | ASP32 | THR33 | ILE34 | ALA35 | ARG36 | TYR37 | TYR38 | ARG39 | LEU40 | ARG41 | ASP42 | TYR43 | ASP44 | VAL45 | PHE46 | PHE47 | LEU48 | THR49 | GLY50 | THR51 | ASP52 | GLU53 | HIS54 | GLY55 | LEU56 | LYS57 | ILE58 | GLN59 | LYS60 | LYS61 | ALA62 | GLU63 | GLU64 | LEU65 | GLY66 | ILE67 | SER68 | PRO69 | LYS70 | GLU71 | LEU72 | VAL73 | ASP74 | ARG75 | ASN76 | ALA77 | GLU78 | ARG79 | PHE80 | LYS81 | LYS82 | LEU83 | TRP84 | GLU85 | PHE86 | LEU87 | LYS88 | ILE89 | GLU90 | TYR91 | THR92 | LYS93 | PHE94 | ILE95 | ARG96 | THR97 | THR98 | ASP99 | PRO100 | TYR101 | HIS102 | VAL103 | LYS104 | PHE105 | VAL106 | GLN107 | LYS108 | VAL109 | PHE110 | GLU111 | GLU112 | CYS113 | TYR114 | LYS115 | ARG116 | GLY117 | ASP118 | ILE119 | TYR120 | LEU121 | GLY122 | GLU123 | TYR124 | LYS158 | GLU159 | PRO160 | SER161 | TYR162 | PHE163 | PHE164 | ARG165 | LEU166 | SER167 | LYS168 | TYR169 | GLN170 | ASP171 | LYS172 | LEU173 | LEU174 | GLU175 | LEU176 | TYR177 | GLU178 | LYS179 | ASN180 | PRO181 | GLU182 | PHE183 | ILE184 | GLN185 | PRO186 | ASP187 | TYR188 | ARG189 | ARG190 | ASN191 | GLU192 | ILE193 | ILE194 | SER195 | PHE196 | VAL197 | LYS198 | GLN199 | GLY200 | LEU201 | LYS202 | ASP203 | LEU204 | SER205 | VAL206 | THR207 | ARG208 | PRO209 | ARG210 | SER211 | ARG212 | VAL213 | LYS214 | TRP215 | GLY216 | ILE217 | PRO218 | VAL219 | PRO220 | PHE221 | ASP222 | PRO223 | GLU224 | HIS225 | THR226 | ILE227 | TYR228 | VAL229 | TRP230 | PHE231 | ASP232 | ALA233 | LEU234 | PHE235 | ASN236 | TYR237 | ILE238 | SER239 | ALA240 | LEU241 | GLU242 | ASP243 | LYS244 | VAL245 | GLU246 | ILE247 | TYR248 | TRP249 | PRO250 | ALA251 | ASP252 | LEU253 | HIS254 | LEU255 | VAL256 | GLY257 | LYS258 | ASP259 | ILE260 | LEU261 | ARG262 | PHE263 | HIS264 | THR265 | VAL266 | TYR267 | TRP268 | PRO269 | ALA270 | PHE271 | LEU272 | MET273 | SER274 | LEU275 | GLY276 | TYR277 | GLU278 | LEU279 | PRO280 | LYS281 | LYS282 | VAL283 | PHE284 | ALA285 | HIS286 | GLY287 | TRP288 | TRP289 | THR290 | VAL291 | GLU292 | GLY293 | LYS294 | LYS295 | MET296 | SER297 | LYS298 | THR299 | LEU300 | GLY301 | ASN302 | VAL303 | VAL304 | ASP305 | PRO306 | TYR307 | GLU308 | VAL309 | VAL310 | GLN311 | GLU312 | TYR313 | GLY314 | LEU315 | ASP316 | GLU317 | VAL318 | ARG319 | TYR320 | PHE321 | LEU322 | LEU323 | ARG324 | GLU325 | VAL326 | PRO327 | PHE328 | GLY329 | GLN330 | ASP331 | GLY332 | ASP333 | PHE334 | SER335 | LYS336 | LYS337 | ALA338 | ILE339 | LEU340 | ASN341 | ARG342 | ILE343 | ASN344 | GLY345 | GLU346 | LEU347 | ALA348 | ASN349 | GLU350 | ILE351 | GLY352 | ASN353 | LEU354 | TYR355 | SER356 | ARG357 | VAL358 | VAL359 | ASN360 | MET361 | ALA362 | HIS363 | LYS364 | PHE365 | LEU366 | GLY367 | GLY368 | GLU369 | VAL370 | SER371 | GLY372 | ALA373 | ARG374 | ASP375 | GLU376 | GLU377 | TYR378 | ALA379 | LYS380 | ILE381 | ALA382 | GLN383 | GLU384 | SER385 | ILE386 | LYS387 | ASN388 | TYR389 | GLU390 | ASN391 | TYR392 | MET393 | GLU394 | LYS395 | VAL396 | ASN397 | PHE398 | TYR399 | LYS400 | ALA401 | ILE402 | GLU403 | GLU404 | ILE405 | LEU406 | LYS407 | PHE408 | THR409 | SER410 | TYR411 | LEU412 | ASN413 | LYS414 | TYR415 | VAL416 | ASP417 | GLU418 | LYS419 | GLN420 | PRO421 | TRP422 | ALA423 | LEU424 | ASN425 | LYS426 | GLU427 | ARG428 | LYS429 | LYS430 | GLU431 | GLU432 | LEU433 | GLN434 | LYS435 | VAL436 | LEU437 | TYR438 | ALA439 | LEU440 | VAL441 | ASP442 | GLY443 | LEU444 | PHE445 | VAL446 | LEU447 | THR448 | HIS449 | LEU450 | LEU451 | TYR452 | PRO453 | ILE454 | THR455 | PRO456 | ASN457 | LYS458 | MET459 | LYS460 | GLU461 | ALA462 | LEU463 | GLN464 | MET465 | LEU466 | GLY467 | GLU468 | LYS469 | GLU470 | PHE471 | LEU472 | LYS473 | GLU474 | LEU475 | LYS476 | PRO477 | TYR478 | SER479 | LYS480 | ASN481 | THR482 | TYR483 | LYS484 | LEU485 | GLY486 | GLU487 | ARG488 | LYS489 | ILE490 | LEU491 | PHE492 | PRO493 | LYS494 | ARG495 | GLU496 | GLY497 |
Unit 1 | G1 | G2 | C3 | G4 | G5 | C6 | G7 | U8 | A9 | G10 | C11 | U12 | C13 | A14 | G15 | C16 | U17 | G18 | G19 | U20 | C21 | A21A | G22 | A23 | G24 | C25 | G26 | G27 | G28 | G29 | A30 | U31 | C32 | U33 | C34 | A35 | U36 | A37 | A38 | G39 | U40 | C41 | C42 | C43 | A44 | G45 | G46 | U47 | C48 | G49 | G50 | A51 | G52 | G53 | U54 | U55 | C56 | G57 | A58 | G59 | U60 | C61 | C62 | U63 | C64 | C65 | C66 | G67 | C68 | C69 | G70 | C71 | C72 | A73 | C74 |
Unit 2 | G1 | G2 | C3 | G4 | G5 | C6 | G7 | U8 | A9 | G10 | C11 | U12 | C13 | A14 | G15 | C16 | U17 | G18 | G19 | U20 | C21 | A21A | G22 | A23 | G24 | C25 | G26 | G27 | G28 | G29 | A30 | U31 | C32 | U33 | C34 | A35 | U36 | A37 | A38 | G39 | U40 | C41 | C42 | C43 | A44 | G45 | G46 | U47 | C48 | G49 | G50 | A51 | G52 | G53 | U54 | U55 | C56 | G57 | A58 | G59 | U60 | C61 | C62 | U63 | C64 | C65 | C66 | G67 | C68 | C69 | G70 | C71 | C72 | A73 | C74 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
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Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |