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Sequence, Chains, Units

Title CHARGED AND UNCHARGED TRNAS ADOPT DISTINCT CONFORMATIONS WHE COMPLEXED WITH HUMAN TRYPTOPHANYL-TRNA SYNTHETASE
Keywords TWO SYNTHETASE-TRNA COMPLEX WITH DISTINCT CONFORMATIONS, ASS COMPLEX AND DISSOCIATION COMPLEX, LIGASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2AZX     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 72 1541 0
2  RNA    D 72 1541 0
3  Protein   TRYPTOPHANYL-TRNA SYNTHETASE  A 387 3034 80
4  Protein   TRYPTOPHANYL-TRNA SYNTHETASE  B 388 3039 80
5  Protein   TRYPTOPHANYL-TRNA SYNTHETASE  A 6 0 50
6  Protein   TRYPTOPHANYL-TRNA SYNTHETASE  B 10 0 58
7 Water     22 0 22
total       957 9155 290
Proteins
Unit 3   GLU82 ASP83 PHE84 VAL85 ASP86 PRO87 TRP88 THR89 VAL90 GLN91 THR92 SER93 SER94 ALA95 LYS96 GLY97 ILE98 ASP99 TYR100 ASP101 LYS102 LEU103 ILE104 VAL105 ARG106 PHE107 GLY108 SER109 SER110 LYS111 ILE112 ASP113 LYS114 GLU115 LEU116 ILE117 ASN118 ARG119 ILE120 GLU121 ARG122 ALA123 THR124 GLY125 GLN126 ARG127 PRO128 HIS129 HIS130 PHE131 LEU132 ARG133 ARG134 GLY135 ILE136 PHE137 PHE138 SER139 HIS140 ARG141 ASP142 MSE143 ASN144 GLN145 VAL146 LEU147 ASP148 ALA149 TYR150 GLU151 ASN152 LYS153 LYS154 PRO155 PHE156 TYR157 LEU158 TYR159 THR160 GLY161 ARG162 GLY163 PRO164 SER165 SER166 GLU167 ALA168 MSE169 HIS170 VAL171 GLY172 HIS173 LEU174 ILE175 PRO176 PHE177 ILE178 PHE179 THR180 LYS181 TRP182 LEU183 GLN184 ASP185 VAL186 PHE187 ASN188 VAL189 PRO190 LEU191 VAL192 ILE193 GLN194 MSE195 THR196 ASP197 ASP198 GLU199 LYS200 TYR201 LEU202 TRP203 LYS204 ASP205 LEU206 THR207 LEU208 ASP209 GLN210 ALA211 TYR212 GLY213 ASP214 ALA215 VAL216 GLU217 ASN218 ALA219 LYS220 ASP221 ILE222 ILE223 ALA224 CYS225 GLY226 PHE227 ASP228 ILE229 ASN230 LYS231 THR232 PHE233 ILE234 PHE235 SER236 ASP237 LEU238 ASP239 TYR240 MSE241 GLY242 MSE243 SER244 SER245 GLY246 PHE247 TYR248 LYS249 ASN250 VAL251 VAL252 LYS253 ILE254 GLN255 LYS256 HIS257 VAL258 THR259 PHE260 ASN261 GLN262 VAL263 LYS264 GLY265 ILE266 PHE267 GLY268 PHE269 THR270 ASP271 SER272 ASP273 CYS274 ILE275 GLY276 LYS277 ILE278 SER279 PHE280 PRO281 ALA282 ILE283 GLN284 ALA285 ALA286 PRO287 SER288 PHE289 SER290 ASN291 SER292 PHE293 PRO294 GLN295 ILE296 PHE297 ARG298 ASP299 ARG300 THR301 ASP302 ILE303 GLN304 CYS305 LEU306 ILE307 PRO308 CYS309 ALA310 ILE311 ASP312 GLN313 ASP314 PRO315 TYR316 PHE317 ARG318 MSE319 THR320 ARG321 ASP322 VAL323 ALA324 PRO325 ARG326 ILE327 GLY328 TYR329 PRO330 LYS331 PRO332 ALA333 LEU334 LEU335 HIS336 SER337 THR338 PHE339 PHE340 PRO341 ALA342 LEU343 GLN344 GLY345 ALA346 GLN347 THR348 LYS349 MSE350 SER351 ALA352 SER353 ASP354 PRO355 ASN356 SER357 SER358 ILE359 PHE360 LEU361 THR362 ASP363 THR364 ALA365 LYS366 GLN367 ILE368 LYS369 THR370 LYS371 VAL372 ASN373 LYS374 HIS375 ALA376 PHE377 SER378 GLY379 GLY380 ARG381 ASP382 THR383 ILE384 GLU385 GLU386 HIS387 ARG388 GLN389 PHE390 GLY391 GLY392 ASN393 CYS394 ASP395 VAL396 ASP397 VAL398 SER399 PHE400 MSE401 TYR402 LEU403 THR404 PHE405 PHE406 LEU407 GLU408 ASP409 ASP410 ASP411 LYS412 LEU413 GLU414 GLN415 ILE416 ARG417 LYS418 ASP419 TYR420 THR421 SER422 GLY423 ALA424 MSE425 LEU426 THR427 GLY428 GLU429 LEU430 LYS431 LYS432 ALA433 LEU434 ILE435 GLU436 VAL437 LEU438 GLN439 PRO440 LEU441 ILE442 ALA443 GLU444 HIS445 GLN446 ALA447 ARG448 ARG449 LYS450 GLU451 VAL452 THR453 ASP454 GLU455 ILE456 VAL457 LYS458 GLU459 PHE460 MSE461 THR462 PRO463 ARG464 LYS465 LEU466 SER467 PHE468
Unit 4   GLU82 ASP83 PHE84 VAL85 ASP86 PRO87 TRP88 THR89 VAL90 GLN91 THR92 SER93 SER94 ALA95 LYS96 GLY97 ILE98 ASP99 TYR100 ASP101 LYS102 LEU103 ILE104 VAL105 ARG106 PHE107 GLY108 SER109 SER110 LYS111 ILE112 ASP113 LYS114 GLU115 LEU116 ILE117 ASN118 ARG119 ILE120 GLU121 ARG122 ALA123 THR124 GLY125 GLN126 ARG127 PRO128 HIS129 HIS130 PHE131 LEU132 ARG133 ARG134 GLY135 ILE136 PHE137 PHE138 SER139 HIS140 ARG141 ASP142 MSE143 ASN144 GLN145 VAL146 LEU147 ASP148 ALA149 TYR150 GLU151 ASN152 LYS153 LYS154 PRO155 PHE156 TYR157 LEU158 TYR159 THR160 GLY161 ARG162 GLY163 PRO164 SER165 SER166 GLU167 ALA168 MSE169 HIS170 VAL171 GLY172 HIS173 LEU174 ILE175 PRO176 PHE177 ILE178 PHE179 THR180 LYS181 TRP182 LEU183 GLN184 ASP185 VAL186 PHE187 ASN188 VAL189 PRO190 LEU191 VAL192 ILE193 GLN194 MSE195 THR196 ASP197 ASP198 GLU199 LYS200 TYR201 LEU202 TRP203 LYS204 ASP205 LEU206 THR207 LEU208 ASP209 GLN210 ALA211 TYR212 GLY213 ASP214 ALA215 VAL216 GLU217 ASN218 ALA219 LYS220 ASP221 ILE222 ILE223 ALA224 CYS225 GLY226 PHE227 ASP228 ILE229 ASN230 LYS231 THR232 PHE233 ILE234 PHE235 SER236 ASP237 LEU238 ASP239 TYR240 MSE241 GLY242 MSE243 SER244 SER245 GLY246 PHE247 TYR248 LYS249 ASN250 VAL251 VAL252 LYS253 ILE254 GLN255 LYS256 HIS257 VAL258 THR259 PHE260 ASN261 GLN262 VAL263 LYS264 GLY265 ILE266 PHE267 GLY268 PHE269 THR270 ASP271 SER272 ASP273 CYS274 ILE275 GLY276 LYS277 ILE278 SER279 PHE280 PRO281 ALA282 ILE283 GLN284 ALA285 ALA286 PRO287 SER288 PHE289 SER290 ASN291 SER292 PHE293 PRO294 GLN295 ILE296 PHE297 ARG298 ASP299 ARG300 THR301 ASP302 ILE303 GLN304 CYS305 LEU306 ILE307 PRO308 CYS309 ALA310 ILE311 ASP312 GLN313 ASP314 PRO315 TYR316 PHE317 ARG318 MSE319 THR320 ARG321 ASP322 VAL323 ALA324 PRO325 ARG326 ILE327 GLY328 TYR329 PRO330 LYS331 PRO332 ALA333 LEU334 LEU335 HIS336 SER337 THR338 PHE339 PHE340 PRO341 ALA342 LEU343 GLN344 GLY345 ALA346 GLN347 THR348 LYS349 MSE350 SER351 ALA352 SER353 ASP354 PRO355 ASN356 SER357 SER358 ILE359 PHE360 LEU361 THR362 ASP363 THR364 ALA365 LYS366 GLN367 ILE368 LYS369 THR370 LYS371 VAL372 ASN373 LYS374 HIS375 ALA376 PHE377 SER378 GLY379 GLY380 ARG381 ASP382 THR383 ILE384 GLU385 GLU386 HIS387 ARG388 GLN389 PHE390 GLY391 GLY392 ASN393 CYS394 ASP395 VAL396 ASP397 VAL398 SER399 PHE400 MSE401 TYR402 LEU403 THR404 PHE405 PHE406 LEU407 GLU408 ASP409 ASP410 ASP411 LYS412 LEU413 GLU414 GLN415 ILE416 ARG417 LYS418 ASP419 TYR420 THR421 SER422 GLY423 ALA424 MSE425 LEU426 THR427 GLY428 GLU429 LEU430 LYS431 LYS432 ALA433 LEU434 ILE435 GLU436 VAL437 LEU438 GLN439 PRO440 LEU441 ILE442 ALA443 GLU444 HIS445 GLN446 ALA447 ARG448 ARG449 LYS450 GLU451 VAL452 THR453 ASP454 GLU455 ILE456 VAL457 LYS458 GLU459 PHE460 MSE461 THR462 PRO463 ARG464 LYS465 LEU466 SER467 PHE468 ASP469
Unit 5   TRP601 TRP602 SO4702 SO4704 SO4707 SO4708
Unit 6   TRP603 SO4701 SO4703 SO4705 SO4706 SO4709 SO4710 GOL801 GOL802 MG901
Nucleic acids
Unit 1   G501 A502 C503 C504 U505 C506 G507 U508 G509 G510 C511 G512 C513 A514 A515 U516 G518 G519 U520 A521 G522 C523 G524 C525 G526 U527 C528 U529 G530 A531 C532 U533 C534 C535 A536 G537 A538 U539 C540 A541 G542 A543 A544 G545 G546 U547 U548 G549 C550 G551 U552 G553 U554 U555 C556 G557 A558 A559 U560 C561 A562 C563 G564 U565 C566 G567 G568 G569 G570 U571 C572 A573
Unit 2   G501 A502 C503 C504 U505 C506 G507 U508 G509 G510 C511 G512 C513 A514 A515 U516 G518 G519 U520 A521 G522 C523 G524 C525 G526 U527 C528 U529 G530 A531 C532 U533 C534 C535 A536 G537 A538 U539 C540 A541 G542 A543 A544 G545 G546 U547 U548 G549 C550 G551 U552 G553 U554 U555 C556 G557 A558 A559 U560 C561 A562 C563 G564 U565 C566 G567 G568 G569 G570 U571 C572 A573
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany