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Title | THE STRUCTURE OF A RIBOSOMAL PROTEIN L1 IN COMPLEX WITH MRNA | |
Keywords | RIBOSOME, RIBOSOMAL PROTEIN, MRNA-PROTEIN COMPLEX, L1, REGULATION OF GENE EXPRESSION, RNA-PROTEIN INTERACTION, STRUCTURAL PROTEIN/RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1ZHO | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | B | 38 | 816 | 0 | |
2 | RNA | D | 38 | 816 | 0 | |
3 | RNA | F | 38 | 816 | 0 | |
4 | RNA | H | 38 | 816 | 0 | |
5 | Protein | 50S RIBOSOMAL PROTEIN L1 | A | 228 | 1718 | 24 |
6 | Protein | 50S RIBOSOMAL PROTEIN L1 | C | 228 | 1718 | 24 |
7 | Protein | 50S RIBOSOMAL PROTEIN L1 | E | 228 | 1718 | 24 |
8 | Protein | 50S RIBOSOMAL PROTEIN L1 | G | 228 | 1718 | 24 |
9 | Ligand | MRNA | D | 1 | 0 | 1 |
10 | Ligand | MRNA | H | 1 | 0 | 1 |
11 | Ligand | 50S RIBOSOMAL PROTEIN L1 | A | 1 | 0 | 1 |
12 | Ligand | 50S RIBOSOMAL PROTEIN L1 | E | 1 | 0 | 1 |
13 | Water | 279 | 0 | 279 | ||
total | 1347 | 10136 | 379 |
Unit 5 | PRO1 | LYS2 | HIS3 | GLY4 | LYS5 | ARG6 | TYR7 | ARG8 | ALA9 | LEU10 | LEU11 | GLU12 | LYS13 | VAL14 | ASP15 | PRO16 | ASN17 | LYS18 | ILE19 | TYR20 | THR21 | ILE22 | ASP23 | GLU24 | ALA25 | ALA26 | HIS27 | LEU28 | VAL29 | LYS30 | GLU31 | LEU32 | ALA33 | THR34 | ALA35 | LYS36 | PHE37 | ASP38 | GLU39 | THR40 | VAL41 | GLU42 | VAL43 | HIS44 | ALA45 | LYS46 | LEU47 | GLY48 | ILE49 | ASP50 | PRO51 | ARG52 | ARG53 | SER54 | ASP55 | GLN56 | ASN57 | VAL58 | ARG59 | GLY60 | THR61 | VAL62 | SER63 | LEU64 | PRO65 | HIS66 | GLY67 | LEU68 | GLY69 | LYS70 | GLN71 | VAL72 | ARG73 | VAL74 | LEU75 | ALA76 | ILE77 | ALA78 | LYS79 | GLY80 | GLU81 | LYS82 | ILE83 | LYS84 | GLU85 | ALA86 | GLU87 | GLU88 | ALA89 | GLY90 | ALA91 | ASP92 | TYR93 | VAL94 | GLY95 | GLY96 | GLU97 | GLU98 | ILE99 | ILE100 | GLN101 | LYS102 | ILE103 | LEU104 | ASP105 | GLY106 | TRP107 | MSE108 | ASP109 | PHE110 | ASP111 | ALA112 | VAL113 | VAL114 | ALA115 | THR116 | PRO117 | ASP118 | VAL119 | MSE120 | GLY121 | ALA122 | VAL123 | GLY124 | SER125 | LYS126 | LEU127 | GLY128 | ARG129 | ILE130 | LEU131 | GLY132 | PRO133 | ARG134 | GLY135 | LEU136 | LEU137 | PRO138 | ASN139 | PRO140 | LYS141 | ALA142 | GLY143 | THR144 | VAL145 | GLY146 | PHE147 | ASN148 | ILE149 | GLY150 | GLU151 | ILE152 | ILE153 | ARG154 | GLU155 | ILE156 | LYS157 | ALA158 | GLY159 | ARG160 | ILE161 | GLU162 | PHE163 | ARG164 | ASN165 | ASP166 | LYS167 | THR168 | GLY169 | ALA170 | ILE171 | HIS172 | ALA173 | PRO174 | VAL175 | GLY176 | LYS177 | ALA178 | SER179 | PHE180 | PRO181 | PRO182 | GLU183 | LYS184 | LEU185 | ALA186 | ASP187 | ASN188 | ILE189 | ARG190 | ALA191 | PHE192 | ILE193 | ARG194 | ALA195 | LEU196 | GLU197 | ALA198 | HIS199 | LYS200 | PRO201 | GLU202 | GLY203 | ALA204 | LYS205 | GLY206 | THR207 | PHE208 | LEU209 | ARG210 | SER211 | VAL212 | TYR213 | VAL214 | THR215 | THR216 | THR217 | MSE218 | GLY219 | PRO220 | SER221 | VAL222 | ARG223 | ILE224 | ASN225 | PRO226 | HIS227 | SER228 |
Unit 6 | PRO1 | LYS2 | HIS3 | GLY4 | LYS5 | ARG6 | TYR7 | ARG8 | ALA9 | LEU10 | LEU11 | GLU12 | LYS13 | VAL14 | ASP15 | PRO16 | ASN17 | LYS18 | ILE19 | TYR20 | THR21 | ILE22 | ASP23 | GLU24 | ALA25 | ALA26 | HIS27 | LEU28 | VAL29 | LYS30 | GLU31 | LEU32 | ALA33 | THR34 | ALA35 | LYS36 | PHE37 | ASP38 | GLU39 | THR40 | VAL41 | GLU42 | VAL43 | HIS44 | ALA45 | LYS46 | LEU47 | GLY48 | ILE49 | ASP50 | PRO51 | ARG52 | ARG53 | SER54 | ASP55 | GLN56 | ASN57 | VAL58 | ARG59 | GLY60 | THR61 | VAL62 | SER63 | LEU64 | PRO65 | HIS66 | GLY67 | LEU68 | GLY69 | LYS70 | GLN71 | VAL72 | ARG73 | VAL74 | LEU75 | ALA76 | ILE77 | ALA78 | LYS79 | GLY80 | GLU81 | LYS82 | ILE83 | LYS84 | GLU85 | ALA86 | GLU87 | GLU88 | ALA89 | GLY90 | ALA91 | ASP92 | TYR93 | VAL94 | GLY95 | GLY96 | GLU97 | GLU98 | ILE99 | ILE100 | GLN101 | LYS102 | ILE103 | LEU104 | ASP105 | GLY106 | TRP107 | MSE108 | ASP109 | PHE110 | ASP111 | ALA112 | VAL113 | VAL114 | ALA115 | THR116 | PRO117 | ASP118 | VAL119 | MSE120 | GLY121 | ALA122 | VAL123 | GLY124 | SER125 | LYS126 | LEU127 | GLY128 | ARG129 | ILE130 | LEU131 | GLY132 | PRO133 | ARG134 | GLY135 | LEU136 | LEU137 | PRO138 | ASN139 | PRO140 | LYS141 | ALA142 | GLY143 | THR144 | VAL145 | GLY146 | PHE147 | ASN148 | ILE149 | GLY150 | GLU151 | ILE152 | ILE153 | ARG154 | GLU155 | ILE156 | LYS157 | ALA158 | GLY159 | ARG160 | ILE161 | GLU162 | PHE163 | ARG164 | ASN165 | ASP166 | LYS167 | THR168 | GLY169 | ALA170 | ILE171 | HIS172 | ALA173 | PRO174 | VAL175 | GLY176 | LYS177 | ALA178 | SER179 | PHE180 | PRO181 | PRO182 | GLU183 | LYS184 | LEU185 | ALA186 | ASP187 | ASN188 | ILE189 | ARG190 | ALA191 | PHE192 | ILE193 | ARG194 | ALA195 | LEU196 | GLU197 | ALA198 | HIS199 | LYS200 | PRO201 | GLU202 | GLY203 | ALA204 | LYS205 | GLY206 | THR207 | PHE208 | LEU209 | ARG210 | SER211 | VAL212 | TYR213 | VAL214 | THR215 | THR216 | THR217 | MSE218 | GLY219 | PRO220 | SER221 | VAL222 | ARG223 | ILE224 | ASN225 | PRO226 | HIS227 | SER228 |
Unit 7 | PRO1 | LYS2 | HIS3 | GLY4 | LYS5 | ARG6 | TYR7 | ARG8 | ALA9 | LEU10 | LEU11 | GLU12 | LYS13 | VAL14 | ASP15 | PRO16 | ASN17 | LYS18 | ILE19 | TYR20 | THR21 | ILE22 | ASP23 | GLU24 | ALA25 | ALA26 | HIS27 | LEU28 | VAL29 | LYS30 | GLU31 | LEU32 | ALA33 | THR34 | ALA35 | LYS36 | PHE37 | ASP38 | GLU39 | THR40 | VAL41 | GLU42 | VAL43 | HIS44 | ALA45 | LYS46 | LEU47 | GLY48 | ILE49 | ASP50 | PRO51 | ARG52 | ARG53 | SER54 | ASP55 | GLN56 | ASN57 | VAL58 | ARG59 | GLY60 | THR61 | VAL62 | SER63 | LEU64 | PRO65 | HIS66 | GLY67 | LEU68 | GLY69 | LYS70 | GLN71 | VAL72 | ARG73 | VAL74 | LEU75 | ALA76 | ILE77 | ALA78 | LYS79 | GLY80 | GLU81 | LYS82 | ILE83 | LYS84 | GLU85 | ALA86 | GLU87 | GLU88 | ALA89 | GLY90 | ALA91 | ASP92 | TYR93 | VAL94 | GLY95 | GLY96 | GLU97 | GLU98 | ILE99 | ILE100 | GLN101 | LYS102 | ILE103 | LEU104 | ASP105 | GLY106 | TRP107 | MSE108 | ASP109 | PHE110 | ASP111 | ALA112 | VAL113 | VAL114 | ALA115 | THR116 | PRO117 | ASP118 | VAL119 | MSE120 | GLY121 | ALA122 | VAL123 | GLY124 | SER125 | LYS126 | LEU127 | GLY128 | ARG129 | ILE130 | LEU131 | GLY132 | PRO133 | ARG134 | GLY135 | LEU136 | LEU137 | PRO138 | ASN139 | PRO140 | LYS141 | ALA142 | GLY143 | THR144 | VAL145 | GLY146 | PHE147 | ASN148 | ILE149 | GLY150 | GLU151 | ILE152 | ILE153 | ARG154 | GLU155 | ILE156 | LYS157 | ALA158 | GLY159 | ARG160 | ILE161 | GLU162 | PHE163 | ARG164 | ASN165 | ASP166 | LYS167 | THR168 | GLY169 | ALA170 | ILE171 | HIS172 | ALA173 | PRO174 | VAL175 | GLY176 | LYS177 | ALA178 | SER179 | PHE180 | PRO181 | PRO182 | GLU183 | LYS184 | LEU185 | ALA186 | ASP187 | ASN188 | ILE189 | ARG190 | ALA191 | PHE192 | ILE193 | ARG194 | ALA195 | LEU196 | GLU197 | ALA198 | HIS199 | LYS200 | PRO201 | GLU202 | GLY203 | ALA204 | LYS205 | GLY206 | THR207 | PHE208 | LEU209 | ARG210 | SER211 | VAL212 | TYR213 | VAL214 | THR215 | THR216 | THR217 | MSE218 | GLY219 | PRO220 | SER221 | VAL222 | ARG223 | ILE224 | ASN225 | PRO226 | HIS227 | SER228 |
Unit 8 | PRO1 | LYS2 | HIS3 | GLY4 | LYS5 | ARG6 | TYR7 | ARG8 | ALA9 | LEU10 | LEU11 | GLU12 | LYS13 | VAL14 | ASP15 | PRO16 | ASN17 | LYS18 | ILE19 | TYR20 | THR21 | ILE22 | ASP23 | GLU24 | ALA25 | ALA26 | HIS27 | LEU28 | VAL29 | LYS30 | GLU31 | LEU32 | ALA33 | THR34 | ALA35 | LYS36 | PHE37 | ASP38 | GLU39 | THR40 | VAL41 | GLU42 | VAL43 | HIS44 | ALA45 | LYS46 | LEU47 | GLY48 | ILE49 | ASP50 | PRO51 | ARG52 | ARG53 | SER54 | ASP55 | GLN56 | ASN57 | VAL58 | ARG59 | GLY60 | THR61 | VAL62 | SER63 | LEU64 | PRO65 | HIS66 | GLY67 | LEU68 | GLY69 | LYS70 | GLN71 | VAL72 | ARG73 | VAL74 | LEU75 | ALA76 | ILE77 | ALA78 | LYS79 | GLY80 | GLU81 | LYS82 | ILE83 | LYS84 | GLU85 | ALA86 | GLU87 | GLU88 | ALA89 | GLY90 | ALA91 | ASP92 | TYR93 | VAL94 | GLY95 | GLY96 | GLU97 | GLU98 | ILE99 | ILE100 | GLN101 | LYS102 | ILE103 | LEU104 | ASP105 | GLY106 | TRP107 | MSE108 | ASP109 | PHE110 | ASP111 | ALA112 | VAL113 | VAL114 | ALA115 | THR116 | PRO117 | ASP118 | VAL119 | MSE120 | GLY121 | ALA122 | VAL123 | GLY124 | SER125 | LYS126 | LEU127 | GLY128 | ARG129 | ILE130 | LEU131 | GLY132 | PRO133 | ARG134 | GLY135 | LEU136 | LEU137 | PRO138 | ASN139 | PRO140 | LYS141 | ALA142 | GLY143 | THR144 | VAL145 | GLY146 | PHE147 | ASN148 | ILE149 | GLY150 | GLU151 | ILE152 | ILE153 | ARG154 | GLU155 | ILE156 | LYS157 | ALA158 | GLY159 | ARG160 | ILE161 | GLU162 | PHE163 | ARG164 | ASN165 | ASP166 | LYS167 | THR168 | GLY169 | ALA170 | ILE171 | HIS172 | ALA173 | PRO174 | VAL175 | GLY176 | LYS177 | ALA178 | SER179 | PHE180 | PRO181 | PRO182 | GLU183 | LYS184 | LEU185 | ALA186 | ASP187 | ASN188 | ILE189 | ARG190 | ALA191 | PHE192 | ILE193 | ARG194 | ALA195 | LEU196 | GLU197 | ALA198 | HIS199 | LYS200 | PRO201 | GLU202 | GLY203 | ALA204 | LYS205 | GLY206 | THR207 | PHE208 | LEU209 | ARG210 | SER211 | VAL212 | TYR213 | VAL214 | THR215 | THR216 | THR217 | MSE218 | GLY219 | PRO220 | SER221 | VAL222 | ARG223 | ILE224 | ASN225 | PRO226 | HIS227 | SER228 |
Unit 1 | G1 | G2 | G3 | A4 | G5 | U6 | G7 | A8 | A9 | G10 | G11 | A12 | G13 | G14 | C15 | U16 | U17 | C18 | G19 | G20 | C21 | C22 | G23 | C24 | G25 | A26 | A27 | A28 | C29 | U30 | U31 | C32 | A33 | C34 | U35 | C36 | C37 | C38 |
Unit 2 | G1 | G2 | G3 | A4 | G5 | U6 | G7 | A8 | A9 | G10 | G11 | A12 | G13 | G14 | C15 | U16 | U17 | C18 | G19 | G20 | C21 | C22 | G23 | C24 | G25 | A26 | A27 | A28 | C29 | U30 | U31 | C32 | A33 | C34 | U35 | C36 | C37 | C38 |
Unit 3 | G1 | G2 | G3 | A4 | G5 | U6 | G7 | A8 | A9 | G10 | G11 | A12 | G13 | G14 | C15 | U16 | U17 | C18 | G19 | G20 | C21 | C22 | G23 | C24 | G25 | A26 | A27 | A28 | C29 | U30 | U31 | C32 | A33 | C34 | U35 | C36 | C37 | C38 |
Unit 4 | G1 | G2 | G3 | A4 | G5 | U6 | G7 | A8 | A9 | G10 | G11 | A12 | G13 | G14 | C15 | U16 | U17 | C18 | G19 | G20 | C21 | C22 | G23 | C24 | G25 | A26 | A27 | A28 | C29 | U30 | U31 | C32 | A33 | C34 | U35 | C36 | C37 | C38 |
Unit 9 | K39 |
Unit 10 | K39 |
Unit 11 | K229 |
Unit 12 | K229 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Go to | [Image Library Home] [Helix Analysis Home] [Image Library Entry] [Helix Analysis Entry] |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |