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Title | 3'-END SPECIFIC RECOGNITION OF HISTONE MRNA STEM-LOOP BY 3'- EXONUCLEASE | |
Keywords | HISTONE MRNA 3'-END-SPECIFIC RECOGNITION; STRUCTURES OF 3'- EXONUCLEASE AND ITS RNA COMPLEX, HYDROLASE-RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1ZBH | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | F | 16 | 333 | 0 | |
2 | RNA | E | 16 | 333 | 0 | |
3 | Protein | 3'-5' EXONUCLEASE ERI1 | A | 289 | 2354 | 0 |
4 | Protein | 3'-5' EXONUCLEASE ERI1 | B | 225 | 1823 | 0 |
5 | Protein | 3'-5' EXONUCLEASE ERI1 | C | 225 | 1823 | 0 |
6 | Protein | 3'-5' EXONUCLEASE ERI1 | D | 289 | 2354 | 0 |
7 | Ligand | 3'-5' EXONUCLEASE ERI1 | A | 3 | 0 | 25 |
8 | Ligand | 3'-5' EXONUCLEASE ERI1 | B | 3 | 0 | 25 |
9 | Ligand | 3'-5' EXONUCLEASE ERI1 | C | 3 | 0 | 25 |
10 | Ligand | 3'-5' EXONUCLEASE ERI1 | D | 3 | 0 | 25 |
11 | Water | 18 | 0 | 18 | ||
total | 1090 | 9020 | 118 |
Unit 3 | ASP60 | PHE61 | SER62 | ASP63 | PRO64 | VAL65 | TYR66 | LYS67 | GLU68 | ILE69 | ALA70 | ILE71 | THR72 | ASN73 | GLY74 | CYS75 | ILE76 | ASN77 | ARG78 | MET79 | SER80 | LYS81 | GLU82 | GLU83 | LEU84 | ARG85 | ALA86 | LYS87 | LEU88 | SER89 | GLU90 | PHE91 | LYS92 | LEU93 | GLU94 | THR95 | ARG96 | GLY97 | VAL98 | LYS99 | ASP100 | VAL101 | LEU102 | LYS103 | LYS104 | ARG105 | LEU106 | LYS107 | ASN108 | TYR109 | TYR110 | LYS111 | LYS112 | GLN113 | LYS114 | LEU115 | MET116 | LEU117 | LYS118 | GLU119 | SER120 | ASN121 | PHE122 | ALA123 | ASP124 | SER125 | TYR126 | TYR127 | ASP128 | TYR129 | ILE130 | CYS131 | ILE132 | ILE133 | ASP134 | PHE135 | GLU136 | ALA137 | THR138 | CYS139 | GLU140 | GLU141 | GLY142 | ASN143 | PRO144 | PRO145 | GLU146 | PHE147 | VAL148 | HIS149 | GLU150 | ILE151 | ILE152 | GLU153 | PHE154 | PRO155 | VAL156 | VAL157 | LEU158 | LEU159 | ASN160 | THR161 | HIS162 | THR163 | LEU164 | GLU165 | ILE166 | GLU167 | ASP168 | THR169 | PHE170 | GLN171 | GLN172 | TYR173 | VAL174 | ARG175 | PRO176 | GLU177 | ILE178 | ASN179 | THR180 | GLN181 | LEU182 | SER183 | ASP184 | PHE185 | CYS186 | ILE187 | SER188 | LEU189 | THR190 | GLY191 | ILE192 | THR193 | GLN194 | ASP195 | GLN196 | VAL197 | ASP198 | ARG199 | ALA200 | ASP201 | THR202 | PHE203 | PRO204 | GLN205 | VAL206 | LEU207 | LYS208 | LYS209 | VAL210 | ILE211 | ASP212 | LEU213 | MET214 | LYS215 | LEU216 | LYS217 | GLU218 | LEU219 | GLY220 | THR221 | LYS222 | TYR223 | LYS224 | TYR225 | SER226 | LEU227 | LEU228 | THR229 | ASP230 | GLY231 | SER232 | TRP233 | ASP234 | MET235 | SER236 | LYS237 | PHE238 | LEU239 | ASN240 | ILE241 | GLN242 | CYS243 | GLN244 | LEU245 | SER246 | ARG247 | LEU248 | LYS249 | TYR250 | PRO251 | PRO252 | PHE253 | ALA254 | LYS255 | LYS256 | TRP257 | ILE258 | ASN259 | ILE260 | ARG261 | LYS262 | SER263 | TYR264 | GLY265 | ASN266 | PHE267 | TYR268 | LYS269 | VAL270 | PRO271 | ARG272 | SER273 | GLN274 | THR275 | LYS276 | LEU277 | THR278 | ILE279 | MET280 | LEU281 | GLU282 | LYS283 | LEU284 | GLY285 | MET286 | ASP287 | TYR288 | ASP289 | GLY290 | ARG291 | PRO292 | ASN293 | CYS294 | GLY295 | LEU296 | ASP297 | ASP298 | SER299 | LYS300 | ASN301 | ILE302 | ALA303 | ARG304 | ILE305 | ALA306 | VAL307 | ARG308 | MET309 | LEU310 | GLN311 | ASP312 | GLY313 | CYS314 | GLU315 | LEU316 | ARG317 | ILE318 | ASN319 | GLU320 | LYS321 | MET322 | HIS323 | ALA324 | GLY325 | GLN326 | LEU327 | MET328 | SER329 | VAL330 | SER331 | SER332 | SER333 | LEU334 | PRO335 | ILE336 | GLU337 | GLY338 | THR339 | PRO340 | PRO341 | PRO342 | GLN343 | MET344 | PRO345 | HIS346 | PHE347 | ARG348 |
Unit 4 | ASP124 | SER125 | TYR126 | TYR127 | ASP128 | TYR129 | ILE130 | CYS131 | ILE132 | ILE133 | ASP134 | PHE135 | GLU136 | ALA137 | THR138 | CYS139 | GLU140 | GLU141 | GLY142 | ASN143 | PRO144 | PRO145 | GLU146 | PHE147 | VAL148 | HIS149 | GLU150 | ILE151 | ILE152 | GLU153 | PHE154 | PRO155 | VAL156 | VAL157 | LEU158 | LEU159 | ASN160 | THR161 | HIS162 | THR163 | LEU164 | GLU165 | ILE166 | GLU167 | ASP168 | THR169 | PHE170 | GLN171 | GLN172 | TYR173 | VAL174 | ARG175 | PRO176 | GLU177 | ILE178 | ASN179 | THR180 | GLN181 | LEU182 | SER183 | ASP184 | PHE185 | CYS186 | ILE187 | SER188 | LEU189 | THR190 | GLY191 | ILE192 | THR193 | GLN194 | ASP195 | GLN196 | VAL197 | ASP198 | ARG199 | ALA200 | ASP201 | THR202 | PHE203 | PRO204 | GLN205 | VAL206 | LEU207 | LYS208 | LYS209 | VAL210 | ILE211 | ASP212 | LEU213 | MET214 | LYS215 | LEU216 | LYS217 | GLU218 | LEU219 | GLY220 | THR221 | LYS222 | TYR223 | LYS224 | TYR225 | SER226 | LEU227 | LEU228 | THR229 | ASP230 | GLY231 | SER232 | TRP233 | ASP234 | MET235 | SER236 | LYS237 | PHE238 | LEU239 | ASN240 | ILE241 | GLN242 | CYS243 | GLN244 | LEU245 | SER246 | ARG247 | LEU248 | LYS249 | TYR250 | PRO251 | PRO252 | PHE253 | ALA254 | LYS255 | LYS256 | TRP257 | ILE258 | ASN259 | ILE260 | ARG261 | LYS262 | SER263 | TYR264 | GLY265 | ASN266 | PHE267 | TYR268 | LYS269 | VAL270 | PRO271 | ARG272 | SER273 | GLN274 | THR275 | LYS276 | LEU277 | THR278 | ILE279 | MET280 | LEU281 | GLU282 | LYS283 | LEU284 | GLY285 | MET286 | ASP287 | TYR288 | ASP289 | GLY290 | ARG291 | PRO292 | ASN293 | CYS294 | GLY295 | LEU296 | ASP297 | ASP298 | SER299 | LYS300 | ASN301 | ILE302 | ALA303 | ARG304 | ILE305 | ALA306 | VAL307 | ARG308 | MET309 | LEU310 | GLN311 | ASP312 | GLY313 | CYS314 | GLU315 | LEU316 | ARG317 | ILE318 | ASN319 | GLU320 | LYS321 | MET322 | HIS323 | ALA324 | GLY325 | GLN326 | LEU327 | MET328 | SER329 | VAL330 | SER331 | SER332 | SER333 | LEU334 | PRO335 | ILE336 | GLU337 | GLY338 | THR339 | PRO340 | PRO341 | PRO342 | GLN343 | MET344 | PRO345 | HIS346 | PHE347 | ARG348 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit 5 | ASP124 | SER125 | TYR126 | TYR127 | ASP128 | TYR129 | ILE130 | CYS131 | ILE132 | ILE133 | ASP134 | PHE135 | GLU136 | ALA137 | THR138 | CYS139 | GLU140 | GLU141 | GLY142 | ASN143 | PRO144 | PRO145 | GLU146 | PHE147 | VAL148 | HIS149 | GLU150 | ILE151 | ILE152 | GLU153 | PHE154 | PRO155 | VAL156 | VAL157 | LEU158 | LEU159 | ASN160 | THR161 | HIS162 | THR163 | LEU164 | GLU165 | ILE166 | GLU167 | ASP168 | THR169 | PHE170 | GLN171 | GLN172 | TYR173 | VAL174 | ARG175 | PRO176 | GLU177 | ILE178 | ASN179 | THR180 | GLN181 | LEU182 | SER183 | ASP184 | PHE185 | CYS186 | ILE187 | SER188 | LEU189 | THR190 | GLY191 | ILE192 | THR193 | GLN194 | ASP195 | GLN196 | VAL197 | ASP198 | ARG199 | ALA200 | ASP201 | THR202 | PHE203 | PRO204 | GLN205 | VAL206 | LEU207 | LYS208 | LYS209 | VAL210 | ILE211 | ASP212 | LEU213 | MET214 | LYS215 | LEU216 | LYS217 | GLU218 | LEU219 | GLY220 | THR221 | LYS222 | TYR223 | LYS224 | TYR225 | SER226 | LEU227 | LEU228 | THR229 | ASP230 | GLY231 | SER232 | TRP233 | ASP234 | MET235 | SER236 | LYS237 | PHE238 | LEU239 | ASN240 | ILE241 | GLN242 | CYS243 | GLN244 | LEU245 | SER246 | ARG247 | LEU248 | LYS249 | TYR250 | PRO251 | PRO252 | PHE253 | ALA254 | LYS255 | LYS256 | TRP257 | ILE258 | ASN259 | ILE260 | ARG261 | LYS262 | SER263 | TYR264 | GLY265 | ASN266 | PHE267 | TYR268 | LYS269 | VAL270 | PRO271 | ARG272 | SER273 | GLN274 | THR275 | LYS276 | LEU277 | THR278 | ILE279 | MET280 | LEU281 | GLU282 | LYS283 | LEU284 | GLY285 | MET286 | ASP287 | TYR288 | ASP289 | GLY290 | ARG291 | PRO292 | ASN293 | CYS294 | GLY295 | LEU296 | ASP297 | ASP298 | SER299 | LYS300 | ASN301 | ILE302 | ALA303 | ARG304 | ILE305 | ALA306 | VAL307 | ARG308 | MET309 | LEU310 | GLN311 | ASP312 | GLY313 | CYS314 | GLU315 | LEU316 | ARG317 | ILE318 | ASN319 | GLU320 | LYS321 | MET322 | HIS323 | ALA324 | GLY325 | GLN326 | LEU327 | MET328 | SER329 | VAL330 | SER331 | SER332 | SER333 | LEU334 | PRO335 | ILE336 | GLU337 | GLY338 | THR339 | PRO340 | PRO341 | PRO342 | GLN343 | MET344 | PRO345 | HIS346 | PHE347 | ARG348 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit 6 | ASP60 | PHE61 | SER62 | ASP63 | PRO64 | VAL65 | TYR66 | LYS67 | GLU68 | ILE69 | ALA70 | ILE71 | THR72 | ASN73 | GLY74 | CYS75 | ILE76 | ASN77 | ARG78 | MET79 | SER80 | LYS81 | GLU82 | GLU83 | LEU84 | ARG85 | ALA86 | LYS87 | LEU88 | SER89 | GLU90 | PHE91 | LYS92 | LEU93 | GLU94 | THR95 | ARG96 | GLY97 | VAL98 | LYS99 | ASP100 | VAL101 | LEU102 | LYS103 | LYS104 | ARG105 | LEU106 | LYS107 | ASN108 | TYR109 | TYR110 | LYS111 | LYS112 | GLN113 | LYS114 | LEU115 | MET116 | LEU117 | LYS118 | GLU119 | SER120 | ASN121 | PHE122 | ALA123 | ASP124 | SER125 | TYR126 | TYR127 | ASP128 | TYR129 | ILE130 | CYS131 | ILE132 | ILE133 | ASP134 | PHE135 | GLU136 | ALA137 | THR138 | CYS139 | GLU140 | GLU141 | GLY142 | ASN143 | PRO144 | PRO145 | GLU146 | PHE147 | VAL148 | HIS149 | GLU150 | ILE151 | ILE152 | GLU153 | PHE154 | PRO155 | VAL156 | VAL157 | LEU158 | LEU159 | ASN160 | THR161 | HIS162 | THR163 | LEU164 | GLU165 | ILE166 | GLU167 | ASP168 | THR169 | PHE170 | GLN171 | GLN172 | TYR173 | VAL174 | ARG175 | PRO176 | GLU177 | ILE178 | ASN179 | THR180 | GLN181 | LEU182 | SER183 | ASP184 | PHE185 | CYS186 | ILE187 | SER188 | LEU189 | THR190 | GLY191 | ILE192 | THR193 | GLN194 | ASP195 | GLN196 | VAL197 | ASP198 | ARG199 | ALA200 | ASP201 | THR202 | PHE203 | PRO204 | GLN205 | VAL206 | LEU207 | LYS208 | LYS209 | VAL210 | ILE211 | ASP212 | LEU213 | MET214 | LYS215 | LEU216 | LYS217 | GLU218 | LEU219 | GLY220 | THR221 | LYS222 | TYR223 | LYS224 | TYR225 | SER226 | LEU227 | LEU228 | THR229 | ASP230 | GLY231 | SER232 | TRP233 | ASP234 | MET235 | SER236 | LYS237 | PHE238 | LEU239 | ASN240 | ILE241 | GLN242 | CYS243 | GLN244 | LEU245 | SER246 | ARG247 | LEU248 | LYS249 | TYR250 | PRO251 | PRO252 | PHE253 | ALA254 | LYS255 | LYS256 | TRP257 | ILE258 | ASN259 | ILE260 | ARG261 | LYS262 | SER263 | TYR264 | GLY265 | ASN266 | PHE267 | TYR268 | LYS269 | VAL270 | PRO271 | ARG272 | SER273 | GLN274 | THR275 | LYS276 | LEU277 | THR278 | ILE279 | MET280 | LEU281 | GLU282 | LYS283 | LEU284 | GLY285 | MET286 | ASP287 | TYR288 | ASP289 | GLY290 | ARG291 | PRO292 | ASN293 | CYS294 | GLY295 | LEU296 | ASP297 | ASP298 | SER299 | LYS300 | ASN301 | ILE302 | ALA303 | ARG304 | ILE305 | ALA306 | VAL307 | ARG308 | MET309 | LEU310 | GLN311 | ASP312 | GLY313 | CYS314 | GLU315 | LEU316 | ARG317 | ILE318 | ASN319 | GLU320 | LYS321 | MET322 | HIS323 | ALA324 | GLY325 | GLN326 | LEU327 | MET328 | SER329 | VAL330 | SER331 | SER332 | SER333 | LEU334 | PRO335 | ILE336 | GLU337 | GLY338 | THR339 | PRO340 | PRO341 | PRO342 | GLN343 | MET344 | PRO345 | HIS346 | PHE347 | ARG348 |
Unit 1 | G6 | G7 | C8 | U9 | C10 | U11 | U12 | U13 | U14 | C15 | A16 | G17 | A18 | G19 | C20 | C21 |
Unit 2 | G6 | G7 | C8 | U9 | C10 | U11 | U12 | U13 | U14 | C15 | A16 | G17 | A18 | G19 | C20 | C21 |
Unit 7 | MG1000 | MG1001 | AMP1002 |
Unit 8 | MG2000 | MG2001 | AMP2002 |
Unit 9 | MG3000 | MG3001 | AMP3002 |
Unit 10 | MG4000 | MG4001 | AMP4002 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Go to | [Image Library Home] [Helix Analysis Home] [Image Library Entry] [Helix Analysis Entry] |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |