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Sequence, Chains, Units

Title PHAGE 434 REPRESSOR TETRAMER (TWO DIMERS) MODEL BOUND TO TWO ADJACENT OPERATOR DNA SITES
Keywords FULL 434 REPRESSOR, GENE REGULATION, OPERATOR SITES
Experiment theoretical model
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1RPD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    A 43 873 0
2  DNA    B 43 885 0
3  Protein   PROTEIN (BACTERIOPHAGE 434 REPRESSOR RESIDUES 1- 209)  C 209 1606 0
4  Protein   PROTEIN (BACTERIOPHAGE 434 REPRESSOR RESIDUES 1- 209)  D 209 1606 0
5  Protein   PROTEIN (BACTERIOPHAGE 434 REPRESSOR RESIDUES 1- 209)  E 209 1606 0
6  Protein   PROTEIN (BACTERIOPHAGE 434 REPRESSOR RESIDUES 1- 209)  F 209 1606 0
total       922 8182 0
Proteins
Unit 3   SER1 ILE2 SER3 SER4 ARG5 VAL6 LYS7 SER8 LYS9 ARG10 ILE11 GLN12 LEU13 GLY14 LEU15 ASN16 GLN17 ALA18 GLU19 LEU20 ALA21 GLN22 LYS23 VAL24 GLY25 THR26 THR27 GLN28 GLN29 SER30 ILE31 GLU32 GLN33 LEU34 GLU35 ASN36 GLY37 LYS38 THR39 LYS40 ARG41 PRO42 ARG43 PHE44 LEU45 PRO46 GLU47 LEU48 ALA49 SER50 ALA51 LEU52 GLY53 VAL54 SER55 VAL56 ASP57 TRP58 LEU59 LEU60 ASN61 GLY62 THR63 SER64 ASP65 SER66 ASN67 VAL68 ARG69 PHE70 VAL71 GLY72 HIS73 VAL74 GLU75 PRO76 LYS77 GLY78 LYS79 TYR80 PRO81 LEU82 ILE83 SER84 MET85 VAL86 ARG87 ALA88 GLY89 SER90 TRP91 MET92 GLU93 ALA94 CYS95 GLU96 PRO97 TYR98 ASP99 ILE100 LYS101 ASP102 ILE103 ALA104 GLU105 TRP106 TYR107 ASP108 SER109 ASP110 VAL111 ASN112 LEU113 LEU114 GLY115 ASN116 GLY117 PHE118 TRP119 LEU120 LYS121 VAL122 GLU123 GLY124 ASP125 SER126 MET127 THR128 SER129 PRO130 VAL131 GLY132 GLN133 SER134 ILE135 PRO136 GLU137 GLY138 HIS139 MET140 VAL141 LEU142 VAL143 ASP144 THR145 GLY146 ARG147 GLU148 PRO149 VAL150 ASN151 GLY152 SER153 LEU154 VAL155 VAL156 ALA157 LYS158 LEU159 THR160 ASP161 ALA162 ASN163 GLU164 ALA165 THR166 PHE167 LYS168 LYS169 LEU170 VAL171 MET172 ASP173 GLY174 GLY175 GLN176 LYS177 TYR178 LEU179 LYS180 GLY181 LEU182 ASN183 PRO184 SER185 TRP186 PRO187 MET188 THR189 PRO190 ILE191 ASN192 GLY193 ASN194 CYS195 LYS196 ILE197 ILE198 GLY199 VAL200 VAL201 VAL202 GLU203 ALA204 ARG205 VAL206 LYS207 PHE208 VAL209
Unit 4   SER1 ILE2 SER3 SER4 ARG5 VAL6 LYS7 SER8 LYS9 ARG10 ILE11 GLN12 LEU13 GLY14 LEU15 ASN16 GLN17 ALA18 GLU19 LEU20 ALA21 GLN22 LYS23 VAL24 GLY25 THR26 THR27 GLN28 GLN29 SER30 ILE31 GLU32 GLN33 LEU34 GLU35 ASN36 GLY37 LYS38 THR39 LYS40 ARG41 PRO42 ARG43 PHE44 LEU45 PRO46 GLU47 LEU48 ALA49 SER50 ALA51 LEU52 GLY53 VAL54 SER55 VAL56 ASP57 TRP58 LEU59 LEU60 ASN61 GLY62 THR63 SER64 ASP65 SER66 ASN67 VAL68 ARG69 PHE70 VAL71 GLY72 HIS73 VAL74 GLU75 PRO76 LYS77 GLY78 LYS79 TYR80 PRO81 LEU82 ILE83 SER84 MET85 VAL86 ARG87 ALA88 GLY89 SER90 TRP91 MET92 GLU93 ALA94 CYS95 GLU96 PRO97 TYR98 ASP99 ILE100 LYS101 ASP102 ILE103 ALA104 GLU105 TRP106 TYR107 ASP108 SER109 ASP110 VAL111 ASN112 LEU113 LEU114 GLY115 ASN116 GLY117 PHE118 TRP119 LEU120 LYS121 VAL122 GLU123 GLY124 ASP125 SER126 MET127 THR128 SER129 PRO130 VAL131 GLY132 GLN133 SER134 ILE135 PRO136 GLU137 GLY138 HIS139 MET140 VAL141 LEU142 VAL143 ASP144 THR145 GLY146 ARG147 GLU148 PRO149 VAL150 ASN151 GLY152 SER153 LEU154 VAL155 VAL156 ALA157 LYS158 LEU159 THR160 ASP161 ALA162 ASN163 GLU164 ALA165 THR166 PHE167 LYS168 LYS169 LEU170 VAL171 MET172 ASP173 GLY174 GLY175 GLN176 LYS177 TYR178 LEU179 LYS180 GLY181 LEU182 ASN183 PRO184 SER185 TRP186 PRO187 MET188 THR189 PRO190 ILE191 ASN192 GLY193 ASN194 CYS195 LYS196 ILE197 ILE198 GLY199 VAL200 VAL201 VAL202 GLU203 ALA204 ARG205 VAL206 LYS207 PHE208 VAL209
Unit 5   SER1 ILE2 SER3 SER4 ARG5 VAL6 LYS7 SER8 LYS9 ARG10 ILE11 GLN12 LEU13 GLY14 LEU15 ASN16 GLN17 ALA18 GLU19 LEU20 ALA21 GLN22 LYS23 VAL24 GLY25 THR26 THR27 GLN28 GLN29 SER30 ILE31 GLU32 GLN33 LEU34 GLU35 ASN36 GLY37 LYS38 THR39 LYS40 ARG41 PRO42 ARG43 PHE44 LEU45 PRO46 GLU47 LEU48 ALA49 SER50 ALA51 LEU52 GLY53 VAL54 SER55 VAL56 ASP57 TRP58 LEU59 LEU60 ASN61 GLY62 THR63 SER64 ASP65 SER66 ASN67 VAL68 ARG69 PHE70 VAL71 GLY72 HIS73 VAL74 GLU75 PRO76 LYS77 GLY78 LYS79 TYR80 PRO81 LEU82 ILE83 SER84 MET85 VAL86 ARG87 ALA88 GLY89 SER90 TRP91 MET92 GLU93 ALA94 CYS95 GLU96 PRO97 TYR98 ASP99 ILE100 LYS101 ASP102 ILE103 ALA104 GLU105 TRP106 TYR107 ASP108 SER109 ASP110 VAL111 ASN112 LEU113 LEU114 GLY115 ASN116 GLY117 PHE118 TRP119 LEU120 LYS121 VAL122 GLU123 GLY124 ASP125 SER126 MET127 THR128 SER129 PRO130 VAL131 GLY132 GLN133 SER134 ILE135 PRO136 GLU137 GLY138 HIS139 MET140 VAL141 LEU142 VAL143 ASP144 THR145 GLY146 ARG147 GLU148 PRO149 VAL150 ASN151 GLY152 SER153 LEU154 VAL155 VAL156 ALA157 LYS158 LEU159 THR160 ASP161 ALA162 ASN163 GLU164 ALA165 THR166 PHE167 LYS168 LYS169 LEU170 VAL171 MET172 ASP173 GLY174 GLY175 GLN176 LYS177 TYR178 LEU179 LYS180 GLY181 LEU182 ASN183 PRO184 SER185 TRP186 PRO187 MET188 THR189 PRO190 ILE191 ASN192 GLY193 ASN194 CYS195 LYS196 ILE197 ILE198 GLY199 VAL200 VAL201 VAL202 GLU203 ALA204 ARG205 VAL206 LYS207 PHE208 VAL209
Unit 6   SER1 ILE2 SER3 SER4 ARG5 VAL6 LYS7 SER8 LYS9 ARG10 ILE11 GLN12 LEU13 GLY14 LEU15 ASN16 GLN17 ALA18 GLU19 LEU20 ALA21 GLN22 LYS23 VAL24 GLY25 THR26 THR27 GLN28 GLN29 SER30 ILE31 GLU32 GLN33 LEU34 GLU35 ASN36 GLY37 LYS38 THR39 LYS40 ARG41 PRO42 ARG43 PHE44 LEU45 PRO46 GLU47 LEU48 ALA49 SER50 ALA51 LEU52 GLY53 VAL54 SER55 VAL56 ASP57 TRP58 LEU59 LEU60 ASN61 GLY62 THR63 SER64 ASP65 SER66 ASN67 VAL68 ARG69 PHE70 VAL71 GLY72 HIS73 VAL74 GLU75 PRO76 LYS77 GLY78 LYS79 TYR80 PRO81 LEU82 ILE83 SER84 MET85 VAL86 ARG87 ALA88 GLY89 SER90 TRP91 MET92 GLU93 ALA94 CYS95 GLU96 PRO97 TYR98 ASP99 ILE100 LYS101 ASP102 ILE103 ALA104 GLU105 TRP106 TYR107 ASP108 SER109 ASP110 VAL111 ASN112 LEU113 LEU114 GLY115 ASN116 GLY117 PHE118 TRP119 LEU120 LYS121 VAL122 GLU123 GLY124 ASP125 SER126 MET127 THR128 SER129 PRO130 VAL131 GLY132 GLN133 SER134 ILE135 PRO136 GLU137 GLY138 HIS139 MET140 VAL141 LEU142 VAL143 ASP144 THR145 GLY146 ARG147 GLU148 PRO149 VAL150 ASN151 GLY152 SER153 LEU154 VAL155 VAL156 ALA157 LYS158 LEU159 THR160 ASP161 ALA162 ASN163 GLU164 ALA165 THR166 PHE167 LYS168 LYS169 LEU170 VAL171 MET172 ASP173 GLY174 GLY175 GLN176 LYS177 TYR178 LEU179 LYS180 GLY181 LEU182 ASN183 PRO184 SER185 TRP186 PRO187 MET188 THR189 PRO190 ILE191 ASN192 GLY193 ASN194 CYS195 LYS196 ILE197 ILE198 GLY199 VAL200 VAL201 VAL202 GLU203 ALA204 ARG205 VAL206 LYS207 PHE208 VAL209
Nucleic acids
Unit 1   A1 A2 G3 T4 A5 C6 A7 A8 A9 C10 T11 T12 T13 C14 T15 T16 G17 T18 A19 T20 T21 T22 T23 C24 A25 T26 A27 C28 A29 A30 T31 G32 T33 A34 T35 C36 T37 T38 G39 T40 T41 T42 G43
Unit 2   A1 C2 A3 A4 A5 C6 A7 A8 G9 A10 T11 A12 C13 A14 T15 T16 G17 T18 A19 T20 G21 A22 A23 A24 A25 T26 A27 C28 A29 A30 G31 A32 A33 A34 G35 T36 T37 T38 G39 T40 A41 C42 T43
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany