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Title | UMUD' BASED MODEL OF A LAMBDA REPRESSOR TETRAMER (TWO DIMERS) BOUND TO TWO ADJACENT OPERATOR SITES | |
Keywords | FULL LAMBDA REPRESSOR, GENE REGULATION, OPERATOR SITES | |
Experiment | theoretical model | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1GFX | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | PROTEIN (BACTERIOPHAGE LAMBDA REPRESSOR CI) | A | 236 | 1832 | 0 |
2 | Protein | PROTEIN (BACTERIOPHAGE LAMBDA REPRESSOR CI) | B | 231 | 1792 | 0 |
3 | Protein | PROTEIN (BACTERIOPHAGE LAMBDA REPRESSOR CI) | C | 236 | 1832 | 0 |
4 | Protein | PROTEIN (BACTERIOPHAGE LAMBDA REPRESSOR CI) | D | 231 | 1792 | 0 |
5 | DNA | E | 44 | 896 | 0 | |
6 | DNA | F | 44 | 902 | 0 | |
total | 1022 | 9046 | 0 |
Unit 1 | SER1 | THR2 | LYS3 | LYS4 | LYS5 | PRO6 | LEU7 | THR8 | GLN9 | GLU10 | GLN11 | LEU12 | GLU13 | ASP14 | ALA15 | ARG16 | ARG17 | LEU18 | LYS19 | ALA20 | ILE21 | TYR22 | GLU23 | LYS24 | LYS25 | LYS26 | ASN27 | GLU28 | LEU29 | GLY30 | LEU31 | SER32 | GLN33 | GLU34 | SER35 | VAL36 | ALA37 | ASP38 | LYS39 | MET40 | GLY41 | MET42 | GLY43 | GLN44 | SER45 | GLY46 | VAL47 | GLY48 | ALA49 | LEU50 | PHE51 | ASN52 | GLY53 | ILE54 | ASN55 | ALA56 | LEU57 | ASN58 | ALA59 | TYR60 | ASN61 | ALA62 | ALA63 | LEU64 | LEU65 | ALA66 | LYS67 | ILE68 | LEU69 | LYS70 | VAL71 | SER72 | VAL73 | GLU74 | GLU75 | PHE76 | SER77 | PRO78 | SER79 | ILE80 | ALA81 | ARG82 | GLU83 | ILE84 | TYR85 | GLU86 | MET87 | TYR88 | GLU89 | ALA90 | VAL91 | SER92 | MET93 | GLN94 | PRO95 | SER96 | LEU97 | ARG98 | SER99 | GLU100 | TYR101 | GLU102 | TYR103 | PRO104 | VAL105 | PHE106 | SER107 | HIS108 | VAL109 | GLN110 | ALA111 | GLY112 | MET113 | PHE114 | SER115 | PRO116 | GLU117 | LEU118 | ARG119 | THR120 | PHE121 | THR122 | LYS123 | GLY124 | ASP125 | ALA126 | GLU127 | ARG128 | TRP129 | VAL130 | SER131 | THR132 | THR133 | LYS134 | LYS135 | ALA136 | SER137 | ASP138 | SER139 | ALA140 | PHE141 | TRP142 | LEU143 | GLU144 | VAL145 | GLU146 | GLY147 | ASN148 | SER149 | MET150 | THR151 | ALA152 | PRO153 | THR154 | GLY155 | SER156 | LYS157 | PRO158 | SER159 | PHE160 | PRO161 | ASP162 | GLY163 | MET164 | LEU165 | ILE166 | LEU167 | VAL168 | ASP169 | PRO170 | GLU171 | GLN172 | ALA173 | VAL174 | GLU175 | PRO176 | GLY177 | ASP178 | PHE179 | CYS180 | ILE181 | ALA182 | ARG183 | LEU184 | GLY185 | GLY186 | ASP187 | GLU188 | PHE189 | THR190 | PHE191 | LYS192 | LYS193 | LEU194 | ILE195 | ARG196 | ASP197 | SER198 | GLY199 | GLN200 | VAL201 | PHE202 | LEU203 | GLN204 | PRO205 | LEU206 | ASN207 | PRO208 | GLN209 | TYR210 | PRO211 | MET212 | ILE213 | PRO214 | CYS215 | ASN216 | GLU217 | SER218 | CYS219 | SER220 | VAL221 | VAL222 | GLY223 | LYS224 | VAL225 | ILE226 | ALA227 | SER228 | GLN229 | TRP230 | PRO231 | GLU232 | GLU233 | THR234 | PHE235 | GLY236 |
Unit 2 | PRO6 | LEU7 | THR8 | GLN9 | GLU10 | GLN11 | LEU12 | GLU13 | ASP14 | ALA15 | ARG16 | ARG17 | LEU18 | LYS19 | ALA20 | ILE21 | TYR22 | GLU23 | LYS24 | LYS25 | LYS26 | ASN27 | GLU28 | LEU29 | GLY30 | LEU31 | SER32 | GLN33 | GLU34 | SER35 | VAL36 | ALA37 | ASP38 | LYS39 | MET40 | GLY41 | MET42 | GLY43 | GLN44 | SER45 | GLY46 | VAL47 | GLY48 | ALA49 | LEU50 | PHE51 | ASN52 | GLY53 | ILE54 | ASN55 | ALA56 | LEU57 | ASN58 | ALA59 | TYR60 | ASN61 | ALA62 | ALA63 | LEU64 | LEU65 | ALA66 | LYS67 | ILE68 | LEU69 | LYS70 | VAL71 | SER72 | VAL73 | GLU74 | GLU75 | PHE76 | SER77 | PRO78 | SER79 | ILE80 | ALA81 | ARG82 | GLU83 | ILE84 | TYR85 | GLU86 | MET87 | TYR88 | GLU89 | ALA90 | VAL91 | SER92 | MET93 | GLN94 | PRO95 | SER96 | LEU97 | ARG98 | SER99 | GLU100 | TYR101 | GLU102 | TYR103 | PRO104 | VAL105 | PHE106 | SER107 | HIS108 | VAL109 | GLN110 | ALA111 | GLY112 | MET113 | PHE114 | SER115 | PRO116 | GLU117 | LEU118 | ARG119 | THR120 | PHE121 | THR122 | LYS123 | GLY124 | ASP125 | ALA126 | GLU127 | ARG128 | TRP129 | VAL130 | SER131 | THR132 | THR133 | LYS134 | LYS135 | ALA136 | SER137 | ASP138 | SER139 | ALA140 | PHE141 | TRP142 | LEU143 | GLU144 | VAL145 | GLU146 | GLY147 | ASN148 | SER149 | MET150 | THR151 | ALA152 | PRO153 | THR154 | GLY155 | SER156 | LYS157 | PRO158 | SER159 | PHE160 | PRO161 | ASP162 | GLY163 | MET164 | LEU165 | ILE166 | LEU167 | VAL168 | ASP169 | PRO170 | GLU171 | GLN172 | ALA173 | VAL174 | GLU175 | PRO176 | GLY177 | ASP178 | PHE179 | CYS180 | ILE181 | ALA182 | ARG183 | LEU184 | GLY185 | GLY186 | ASP187 | GLU188 | PHE189 | THR190 | PHE191 | LYS192 | LYS193 | LEU194 | ILE195 | ARG196 | ASP197 | SER198 | GLY199 | GLN200 | VAL201 | PHE202 | LEU203 | GLN204 | PRO205 | LEU206 | ASN207 | PRO208 | GLN209 | TYR210 | PRO211 | MET212 | ILE213 | PRO214 | CYS215 | ASN216 | GLU217 | SER218 | CYS219 | SER220 | VAL221 | VAL222 | GLY223 | LYS224 | VAL225 | ILE226 | ALA227 | SER228 | GLN229 | TRP230 | PRO231 | GLU232 | GLU233 | THR234 | PHE235 | GLY236 | |||||
Unit 3 | SER1 | THR2 | LYS3 | LYS4 | LYS5 | PRO6 | LEU7 | THR8 | GLN9 | GLU10 | GLN11 | LEU12 | GLU13 | ASP14 | ALA15 | ARG16 | ARG17 | LEU18 | LYS19 | ALA20 | ILE21 | TYR22 | GLU23 | LYS24 | LYS25 | LYS26 | ASN27 | GLU28 | LEU29 | GLY30 | LEU31 | SER32 | GLN33 | GLU34 | SER35 | VAL36 | ALA37 | ASP38 | LYS39 | MET40 | GLY41 | MET42 | GLY43 | GLN44 | SER45 | GLY46 | VAL47 | GLY48 | ALA49 | LEU50 | PHE51 | ASN52 | GLY53 | ILE54 | ASN55 | ALA56 | LEU57 | ASN58 | ALA59 | TYR60 | ASN61 | ALA62 | ALA63 | LEU64 | LEU65 | ALA66 | LYS67 | ILE68 | LEU69 | LYS70 | VAL71 | SER72 | VAL73 | GLU74 | GLU75 | PHE76 | SER77 | PRO78 | SER79 | ILE80 | ALA81 | ARG82 | GLU83 | ILE84 | TYR85 | GLU86 | MET87 | TYR88 | GLU89 | ALA90 | VAL91 | SER92 | MET93 | GLN94 | PRO95 | SER96 | LEU97 | ARG98 | SER99 | GLU100 | TYR101 | GLU102 | TYR103 | PRO104 | VAL105 | PHE106 | SER107 | HIS108 | VAL109 | GLN110 | ALA111 | GLY112 | MET113 | PHE114 | SER115 | PRO116 | GLU117 | LEU118 | ARG119 | THR120 | PHE121 | THR122 | LYS123 | GLY124 | ASP125 | ALA126 | GLU127 | ARG128 | TRP129 | VAL130 | SER131 | THR132 | THR133 | LYS134 | LYS135 | ALA136 | SER137 | ASP138 | SER139 | ALA140 | PHE141 | TRP142 | LEU143 | GLU144 | VAL145 | GLU146 | GLY147 | ASN148 | SER149 | MET150 | THR151 | ALA152 | PRO153 | THR154 | GLY155 | SER156 | LYS157 | PRO158 | SER159 | PHE160 | PRO161 | ASP162 | GLY163 | MET164 | LEU165 | ILE166 | LEU167 | VAL168 | ASP169 | PRO170 | GLU171 | GLN172 | ALA173 | VAL174 | GLU175 | PRO176 | GLY177 | ASP178 | PHE179 | CYS180 | ILE181 | ALA182 | ARG183 | LEU184 | GLY185 | GLY186 | ASP187 | GLU188 | PHE189 | THR190 | PHE191 | LYS192 | LYS193 | LEU194 | ILE195 | ARG196 | ASP197 | SER198 | GLY199 | GLN200 | VAL201 | PHE202 | LEU203 | GLN204 | PRO205 | LEU206 | ASN207 | PRO208 | GLN209 | TYR210 | PRO211 | MET212 | ILE213 | PRO214 | CYS215 | ASN216 | GLU217 | SER218 | CYS219 | SER220 | VAL221 | VAL222 | GLY223 | LYS224 | VAL225 | ILE226 | ALA227 | SER228 | GLN229 | TRP230 | PRO231 | GLU232 | GLU233 | THR234 | PHE235 | GLY236 |
Unit 4 | PRO6 | LEU7 | THR8 | GLN9 | GLU10 | GLN11 | LEU12 | GLU13 | ASP14 | ALA15 | ARG16 | ARG17 | LEU18 | LYS19 | ALA20 | ILE21 | TYR22 | GLU23 | LYS24 | LYS25 | LYS26 | ASN27 | GLU28 | LEU29 | GLY30 | LEU31 | SER32 | GLN33 | GLU34 | SER35 | VAL36 | ALA37 | ASP38 | LYS39 | MET40 | GLY41 | MET42 | GLY43 | GLN44 | SER45 | GLY46 | VAL47 | GLY48 | ALA49 | LEU50 | PHE51 | ASN52 | GLY53 | ILE54 | ASN55 | ALA56 | LEU57 | ASN58 | ALA59 | TYR60 | ASN61 | ALA62 | ALA63 | LEU64 | LEU65 | ALA66 | LYS67 | ILE68 | LEU69 | LYS70 | VAL71 | SER72 | VAL73 | GLU74 | GLU75 | PHE76 | SER77 | PRO78 | SER79 | ILE80 | ALA81 | ARG82 | GLU83 | ILE84 | TYR85 | GLU86 | MET87 | TYR88 | GLU89 | ALA90 | VAL91 | SER92 | MET93 | GLN94 | PRO95 | SER96 | LEU97 | ARG98 | SER99 | GLU100 | TYR101 | GLU102 | TYR103 | PRO104 | VAL105 | PHE106 | SER107 | HIS108 | VAL109 | GLN110 | ALA111 | GLY112 | MET113 | PHE114 | SER115 | PRO116 | GLU117 | LEU118 | ARG119 | THR120 | PHE121 | THR122 | LYS123 | GLY124 | ASP125 | ALA126 | GLU127 | ARG128 | TRP129 | VAL130 | SER131 | THR132 | THR133 | LYS134 | LYS135 | ALA136 | SER137 | ASP138 | SER139 | ALA140 | PHE141 | TRP142 | LEU143 | GLU144 | VAL145 | GLU146 | GLY147 | ASN148 | SER149 | MET150 | THR151 | ALA152 | PRO153 | THR154 | GLY155 | SER156 | LYS157 | PRO158 | SER159 | PHE160 | PRO161 | ASP162 | GLY163 | MET164 | LEU165 | ILE166 | LEU167 | VAL168 | ASP169 | PRO170 | GLU171 | GLN172 | ALA173 | VAL174 | GLU175 | PRO176 | GLY177 | ASP178 | PHE179 | CYS180 | ILE181 | ALA182 | ARG183 | LEU184 | GLY185 | GLY186 | ASP187 | GLU188 | PHE189 | THR190 | PHE191 | LYS192 | LYS193 | LEU194 | ILE195 | ARG196 | ASP197 | SER198 | GLY199 | GLN200 | VAL201 | PHE202 | LEU203 | GLN204 | PRO205 | LEU206 | ASN207 | PRO208 | GLN209 | TYR210 | PRO211 | MET212 | ILE213 | PRO214 | CYS215 | ASN216 | GLU217 | SER218 | CYS219 | SER220 | VAL221 | VAL222 | GLY223 | LYS224 | VAL225 | ILE226 | ALA227 | SER228 | GLN229 | TRP230 | PRO231 | GLU232 | GLU233 | THR234 | PHE235 | GLY236 |
Unit 5 | T1 | A2 | T3 | A4 | T5 | C6 | A7 | C8 | C9 | G10 | C11 | C12 | A13 | G14 | T15 | G16 | G17 | T18 | A19 | T20 | T21 | T22 | A23 | T24 | G25 | A26 | T27 | A28 | T29 | C30 | A31 | C32 | C33 | G34 | C35 | C36 | A37 | G38 | T39 | G40 | G41 | T42 | A43 | T44 |
Unit 6 | A45 | A46 | T47 | A48 | C49 | C50 | A51 | C52 | T53 | G54 | G55 | C56 | G57 | G58 | T59 | G60 | A61 | T62 | A63 | T64 | C65 | A66 | T67 | A68 | A69 | A70 | T71 | A72 | C73 | C74 | A75 | C76 | T77 | G78 | G79 | C80 | G81 | G82 | T83 | G84 | A85 | T86 | A87 | T88 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
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Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |