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Sequence, Chains, Asymmetric and Biological Units

Title HIGH RESOLUTION NMR STRUCTURE OF THE STEREOREGULAR (ALL-RP)- PHOSPHOROTHIOATE-DNA/RNA HYBRID D (G*PS*C*PS*G*PS*T*PS*C*PS*A*PS*G*PS*G)R(CCUGACGC), MINIMIZED AVERAGE STRUCTURE
Keywords OLIGONUCLEOTIDE, DNA-RNA HYBRID, PHOSPHOROTHIOATE, THIONUCLEOTIDE, ANTISENSE
Experiment NMR
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   8PSH     released     available     available     Quaternary Structure Server  
NDB   8PSH                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   DNA (5'-D(*DGP*(SC)P*(GS)P*(PST)P*(SC)P*(AS) P*(GS)P*(GS))-3')  A 8 31 224
2  RNA    B 8 254 0
total       16 285 224

Nucleic acids
Unit 2 C9 C10 U11 G12 A13 C14 G15 C16

Other macromolecules
Unit 1 DG1 SC2 GS3 PST4 SC5 AS6 GS7 GS8

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany