6DN0 - Sequence, Chains, Asymmetric and Biological Units

• Title: RETROFITTED ANTIBODIES WITH STABILIZING MUTATIONS: HERCEPTIN MUTANT WITH VH K30D AND VL S52D.
• Keywords: HERCEPTIN, RETROFIT, STABILIZING MUTATION, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	6DN0	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HUMAN VARIABLE HEAVY CHAIN OF HERCEPTIN CONTAININ MUTATION K30D	A	119	916	0
2	Protein	HUMAN VARIABLE LIGHT CHAIN OF HERCEPTIN CONTAININ MUTATION S52D	B	106	808	0
3	Protein	HUMAN VARIABLE HEAVY CHAIN OF HERCEPTIN CONTAININ MUTATION K30D	C	116	897	0
4	Protein	HUMAN VARIABLE LIGHT CHAIN OF HERCEPTIN CONTAININ MUTATION S52D	D	106	768	0
5	Ligand	HUMAN VARIABLE HEAVY CHAIN OF HERCEPTIN CONTAININ MUTATION K30D	A	2	0	6
6	Ligand	HUMAN VARIABLE LIGHT CHAIN OF HERCEPTIN CONTAININ MUTATION S52D	B	1	0	3
7	Ligand	HUMAN VARIABLE HEAVY CHAIN OF HERCEPTIN CONTAININ MUTATION K30D	C	1	0	3
8	Water			63	0	63
total				514	3389	75

Proteins

Unit 1	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ASN 28 ILE 29 ASP 30 ASP 31 THR 32 TYR 33 ILE 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 ARG 50 ILE 51 TYR 52 PRO 53 THR 54 ASN 55 GLY 56 TYR 57 THR 58 ARG 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ALA 72 ASP 73 THR 74 SER 75 LYS 76 ASN 77 THR 78 ALA 79 TYR 80 LEU 81 GLN 82 MET 83 ASN 84 SER 85 LEU 86 ARG 87 ALA 88 GLU 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 SER 97 ARG 98 TRP 99 GLY 100 GLY 101 ASP 102 GLY 103 PHE 104 TYR 105 ALA 106 MET 107 ASP 108 VAL 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 LEU 115 VAL 116 THR 117 VAL 118 SER 119
Unit 2	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 VAL 29 ASN 30 THR 31 ALA 32 VAL 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 SER 50 ALA 51 ASP 52 PHE 53 LEU 54 TYR 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 ARG 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 HIS 91 TYR 92 THR 93 THR 94 PRO 95 PRO 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106
Unit 3	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 ASN 28 ILE 29 ASP 30 ASP 31 THR 32 TYR 33 ILE 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 ARG 50 ILE 51 TYR 52 PRO 53 THR 54 ASN 55 GLY 56 TYR 57 THR 58 ARG 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ALA 72 ASP 73 THR 74 SER 75 LYS 76 ASN 77 THR 78 ALA 79 TYR 80 LEU 81 GLN 82 MET 83 ASN 84 SER 85 LEU 86 ARG 87 ALA 88 GLU 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 SER 97 ARG 98 TRP 99 GLY 100 PHE 104 TYR 105 ALA 106 MET 107 ASP 108 VAL 109 TRP 110 GLY 111 GLN 112 GLY 113 THR 114 LEU 115 VAL 116 THR 117 VAL 118 SER 119
Unit 4	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 VAL 29 ASN 30 THR 31 ALA 32 VAL 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 SER 50 ALA 51 ASP 52 PHE 53 LEU 54 TYR 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 ARG 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 HIS 91 TYR 92 THR 93 THR 94 PRO 95 PRO 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106

Ligands

Unit 5	FMT 201 FMT 202
Unit 6	FMT 201
Unit 7	FMT 201