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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RAPA, A SWI2/SNF2 PROTEIN THAT RECYCLES POLYMERASE DURING TRANSCRIPTION
Keywords HYDROLASE, TRANSCRIPTION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   6BOG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA POLYMERASE-ASSOCIATED PROTEIN RAPA  A 967 7535 184
2  Protein   RNA POLYMERASE-ASSOCIATED PROTEIN RAPA  B 967 7535 184
3  Ligand   RNA POLYMERASE-ASSOCIATED PROTEIN RAPA  A 3 0 15
4  Ligand   RNA POLYMERASE-ASSOCIATED PROTEIN RAPA  B 4 0 20
total       1941 15070 403
Proteins
Unit 1 PRO2 PHE3 THR4 LEU5 GLY6 GLN7 ARG8 TRP9 ILE10 SER11 ASP12 THR13 GLU14 SER15 GLU16 LEU17 GLY18 LEU19 GLY20 THR21 VAL22 VAL23 ALA24 VAL25 ASP26 ALA27 ARG28 THR29 VAL30 THR31 LEU32 LEU33 PHE34 PRO35 SER36 THR37 GLY38 GLU39 ASN40 ARG41 LEU42 TYR43 ALA44 ARG45 SER46 ASP47 SER48 PRO49 VAL50 THR51 ARG52 VAL53 MSE54 PHE55 ASN56 PRO57 GLY58 ASP59 THR60 ILE61 THR62 SER63 HIS64 ASP65 GLY66 TRP67 GLN68 MSE69 GLN70 VAL71 GLU72 GLU73 VAL74 LYS75 GLU76 GLU77 ASN78 GLY79 LEU80 LEU81 THR82 TYR83 ILE84 GLY85 THR86 ARG87 LEU88 ASP89 THR90 GLU91 GLU92 SER93 GLY94 VAL95 ALA96 LEU97 ARG98 GLU99 VAL100 PHE101 LEU102 ASP103 SER104 LYS105 LEU106 VAL107 PHE108 SER109 LYS110 PRO111 GLN112 ASP113 ARG114 LEU115 PHE116 ALA117 GLY118 GLN119 ILE120 ASP121 ARG122 MSE123 ASP124 ARG125 PHE126 ALA127 LEU128 ARG129 TYR130 ARG131 ALA132 ARG133 LYS134 TYR135 SER136 SER137 GLU138 GLN139 PHE140 ARG141 MSE142 PRO143 TYR144 SER145 GLY146 LEU147 ARG148 GLY149 GLN150 ARG151 THR152 SER153 LEU154 ILE155 PRO156 HIS157 GLN158 LEU159 ASN160 ILE161 ALA162 HIS163 ASP164 VAL165 GLY166 ARG167 ARG168 HIS169 ALA170 PRO171 ARG172 VAL173 LEU174 LEU175 ALA176 ASP177 GLU178 VAL179 GLY180 LEU181 GLY182 LYS183 THR184 ILE185 GLU186 ALA187 GLY188 MSE189 ILE190 LEU191 HIS192 GLN193 GLN194 LEU195 LEU196 SER197 GLY198 ALA199 ALA200 GLU201 ARG202 VAL203 LEU204 ILE205 ILE206 VAL207 PRO208 GLU209 THR210 LEU211 GLN212 HIS213 GLN214 TRP215 LEU216 VAL217 GLU218 MSE219 LEU220 ARG221 ARG222 PHE223 ASN224 LEU225 ARG226 PHE227 ALA228 LEU229 PHE230 ASP231 ASP232 GLU233 ARG234 TYR235 ALA236 GLU237 ALA238 GLN239 HIS240 ASP241 ALA242 TYR243 ASN244 PRO245 PHE246 ASP247 THR248 GLU249 GLN250 LEU251 VAL252 ILE253 CYS254 SER255 LEU256 ASP257 PHE258 ALA259 ARG260 ARG261 SER262 LYS263 GLN264 ARG265 LEU266 GLU267 HIS268 LEU269 CYS270 GLU271 ALA272 GLU273 TRP274 ASP275 LEU276 LEU277 VAL278 VAL279 ASP280 GLU281 ALA282 HIS283 HIS284 LEU285 VAL286 TRP287 SER288 GLU289 ASP290 ALA291 PRO292 SER293 ARG294 GLU295 TYR296 GLN297 ALA298 ILE299 GLU300 GLN301 LEU302 ALA303 GLU304 HIS305 VAL306 PRO307 GLY308 VAL309 LEU310 LEU311 LEU312 THR313 ALA314 THR315 PRO316 GLU317 GLN318 LEU319 GLY320 MSE321 GLU322 SER323 HIS324 PHE325 ALA326 ARG327 LEU328 ARG329 LEU330 LEU331 ASP332 PRO333 ASN334 ARG335 PHE336 HIS337 ASP338 PHE339 ALA340 GLN341 PHE342 VAL343 GLU344 GLU345 GLN346 LYS347 ASN348 TYR349 ARG350 PRO351 VAL352 ALA353 ASP354 ALA355 VAL356 ALA357 MSE358 LEU359 LEU360 ALA361 GLY362 ASN363 LYS364 LEU365 SER366 ASN367 ASP368 GLU369 LEU370 ASN371 MSE372 LEU373 GLY374 GLU375 MSE376 ILE377 GLY378 GLU379 GLN380 ASP381 ILE382 GLU383 PRO384 LEU385 LEU386 GLN387 ALA388 ALA389 ASN390 SER391 ASP392 SER393 GLU394 ASP395 ALA396 GLN397 SER398 ALA399 ARG400 GLN401 GLU402 LEU403 VAL404 SER405 MSE406 LEU407 MSE408 ASP409 ARG410 HIS411 GLY412 THR413 SER414 ARG415 VAL416 LEU417 PHE418 ARG419 ASN420 THR421 ARG422 ASN423 GLY424 VAL425 LYS426 GLY427 PHE428 PRO429 LYS430 ARG431 GLU432 LEU433 HIS434 THR435 ILE436 LYS437 LEU438 PRO439 LEU440 PRO441 THR442 GLN443 TYR444 GLN445 THR446 ALA447 ILE448 LYS449 VAL450 SER451 GLY452 ILE453 MSE454 GLY455 ALA456 ARG457 LYS458 SER459 ALA460 GLU461 ASP462 ARG463 ALA464 ARG465 ASP466 MSE467 LEU468 TYR469 PRO470 GLU471 ARG472 ILE473 TYR474 GLN475 GLU476 PHE477 GLU478 GLY479 ASP480 ASN481 ALA482 THR483 TRP484 TRP485 ASN486 PHE487 ASP488 PRO489 ARG490 VAL491 GLU492 TRP493 LEU494 MSE495 GLY496 TYR497 LEU498 THR499 SER500 HIS501 ARG502 SER503 GLN504 LYS505 VAL506 LEU507 VAL508 ILE509 CYS510 ALA511 LYS512 ALA513 ALA514 THR515 ALA516 LEU517 GLN518 LEU519 GLU520 GLN521 VAL522 LEU523 ARG524 GLU525 ARG526 GLU527 GLY528 ILE529 ARG530 ALA531 ALA532 VAL533 PHE534 HIS535 GLU536 GLY537 MSE538 SER539 ILE540 ILE541 GLU542 ARG543 ASP544 ARG545 ALA546 ALA547 ALA548 TRP549 PHE550 ALA551 GLU552 GLU553 ASP554 THR555 GLY556 ALA557 GLN558 VAL559 LEU560 LEU561 CYS562 SER563 GLU564 ILE565 GLY566 SER567 GLU568 GLY569 ARG570 ASN571 PHE572 GLN573 PHE574 ALA575 SER576 HIS577 MSE578 VAL579 MSE580 PHE581 ASP582 LEU583 PRO584 PHE585 ASN586 PRO587 ASP588 LEU589 LEU590 GLU591 GLN592 ARG593 ILE594 GLY595 ARG596 LEU597 ASP598 ARG599 ILE600 GLY601 GLN602 ALA603 HIS604 ASP605 ILE606 GLN607 ILE608 HIS609 VAL610 PRO611 TYR612 LEU613 GLU614 LYS615 THR616 ALA617 GLN618 SER619 VAL620 LEU621 VAL622 ARG623 TRP624 TYR625 HIS626 GLU627 GLY628 LEU629 ASP630 ALA631 PHE632 GLU633 HIS634 THR635 CYS636 PRO637 THR638 GLY639 ARG640 THR641 ILE642 TYR643 ASP644 SER645 VAL646 TYR647 ASN648 ASP649 LEU650 ILE651 ASN652 TYR653 LEU654 ALA655 SER656 PRO657 ASP658 GLN659 THR660 GLU661 GLY662 PHE663 ASP664 ASP665 LEU666 ILE667 LYS668 ASN669 CYS670 ARG671 GLU672 GLN673 HIS674 GLU675 ALA676 LEU677 LYS678 ALA679 GLN680 LEU681 GLU682 GLN683 GLY684 ARG685 ASP686 ARG687 LEU688 LEU689 GLU690 ILE691 HIS692 SER693 ASN694 GLY695 GLY696 GLU697 LYS698 ALA699 GLN700 ALA701 LEU702 ALA703 GLU704 SER705 ILE706 GLU707 GLU708 GLN709 ASP710 ASP711 ASP712 THR713 ASN714 LEU715 ILE716 ALA717 PHE718 ALA719 MSE720 ASN721 LEU722 PHE723 ASP724 ILE725 ILE726 GLY727 ILE728 ASN729 GLN730 ASP731 ASP732 ARG733 GLY734 ASP735 ASN736 MSE737 ILE738 VAL739 LEU740 THR741 PRO742 SER743 ASP744 HIS745 MSE746 LEU747 VAL748 PRO749 ASP750 PHE751 PRO752 GLY753 LEU754 SER755 GLU756 ASP757 GLY758 ILE759 THR760 ILE761 THR762 PHE763 ASP764 ARG765 GLU766 VAL767 ALA768 LEU769 ALA770 ARG771 GLU772 ASP773 ALA774 GLN775 PHE776 ILE777 THR778 TRP779 GLU780 HIS781 PRO782 LEU783 ILE784 ARG785 ASN786 GLY787 LEU788 ASP789 LEU790 ILE791 LEU792 SER793 GLY794 ASP795 THR796 GLY797 SER798 SER799 THR800 ILE801 SER802 LEU803 LEU804 LYS805 ASN806 LYS807 ALA808 LEU809 PRO810 VAL811 GLY812 THR813 LEU814 LEU815 VAL816 GLU817 LEU818 ILE819 TYR820 VAL821 VAL822 GLU823 ALA824 GLN825 ALA826 PRO827 LYS828 GLN829 LEU830 GLN831 LEU832 ASN833 ARG834 PHE835 LEU836 PRO837 PRO838 THR839 PRO840 VAL841 ARG842 MSE843 LEU844 LEU845 ASP846 LYS847 ASN848 GLY849 ASN850 ASN851 LEU852 ALA853 ALA854 GLN855 VAL856 GLU857 PHE858 GLU859 THR860 PHE861 ASN862 ARG863 GLN864 LEU865 ASN866 ALA867 VAL868 ASN869 ARG870 HIS871 THR872 GLY873 SER874 LYS875 LEU876 VAL877 ASN878 ALA879 VAL880 GLN881 GLN882 ASP883 VAL884 HIS885 ALA886 ILE887 LEU888 GLN889 LEU890 GLY891 GLU892 ALA893 GLN894 ILE895 GLU896 LYS897 SER898 ALA899 ARG900 ALA901 LEU902 ILE903 ASP904 ALA905 ALA906 ARG907 ASN908 GLU909 ALA910 ASP911 GLU912 LYS913 LEU914 SER915 ALA916 GLU917 LEU918 SER919 ARG920 LEU921 GLU922 ALA923 LEU924 ARG925 ALA926 VAL927 ASN928 PRO929 ASN930 ILE931 ARG932 ASP933 ASP934 GLU935 LEU936 THR937 ALA938 ILE939 GLU940 SER941 ASN942 ARG943 GLN944 GLN945 VAL946 MSE947 GLU948 SER949 LEU950 ASP951 GLN952 ALA953 GLY954 TRP955 ARG956 LEU957 ASP958 ALA959 LEU960 ARG961 LEU962 ILE963 VAL964 VAL965 THR966 HIS967 GLN968
Unit 2 PRO2 PHE3 THR4 LEU5 GLY6 GLN7 ARG8 TRP9 ILE10 SER11 ASP12 THR13 GLU14 SER15 GLU16 LEU17 GLY18 LEU19 GLY20 THR21 VAL22 VAL23 ALA24 VAL25 ASP26 ALA27 ARG28 THR29 VAL30 THR31 LEU32 LEU33 PHE34 PRO35 SER36 THR37 GLY38 GLU39 ASN40 ARG41 LEU42 TYR43 ALA44 ARG45 SER46 ASP47 SER48 PRO49 VAL50 THR51 ARG52 VAL53 MSE54 PHE55 ASN56 PRO57 GLY58 ASP59 THR60 ILE61 THR62 SER63 HIS64 ASP65 GLY66 TRP67 GLN68 MSE69 GLN70 VAL71 GLU72 GLU73 VAL74 LYS75 GLU76 GLU77 ASN78 GLY79 LEU80 LEU81 THR82 TYR83 ILE84 GLY85 THR86 ARG87 LEU88 ASP89 THR90 GLU91 GLU92 SER93 GLY94 VAL95 ALA96 LEU97 ARG98 GLU99 VAL100 PHE101 LEU102 ASP103 SER104 LYS105 LEU106 VAL107 PHE108 SER109 LYS110 PRO111 GLN112 ASP113 ARG114 LEU115 PHE116 ALA117 GLY118 GLN119 ILE120 ASP121 ARG122 MSE123 ASP124 ARG125 PHE126 ALA127 LEU128 ARG129 TYR130 ARG131 ALA132 ARG133 LYS134 TYR135 SER136 SER137 GLU138 GLN139 PHE140 ARG141 MSE142 PRO143 TYR144 SER145 GLY146 LEU147 ARG148 GLY149 GLN150 ARG151 THR152 SER153 LEU154 ILE155 PRO156 HIS157 GLN158 LEU159 ASN160 ILE161 ALA162 HIS163 ASP164 VAL165 GLY166 ARG167 ARG168 HIS169 ALA170 PRO171 ARG172 VAL173 LEU174 LEU175 ALA176 ASP177 GLU178 VAL179 GLY180 LEU181 GLY182 LYS183 THR184 ILE185 GLU186 ALA187 GLY188 MSE189 ILE190 LEU191 HIS192 GLN193 GLN194 LEU195 LEU196 SER197 GLY198 ALA199 ALA200 GLU201 ARG202 VAL203 LEU204 ILE205 ILE206 VAL207 PRO208 GLU209 THR210 LEU211 GLN212 HIS213 GLN214 TRP215 LEU216 VAL217 GLU218 MSE219 LEU220 ARG221 ARG222 PHE223 ASN224 LEU225 ARG226 PHE227 ALA228 LEU229 PHE230 ASP231 ASP232 GLU233 ARG234 TYR235 ALA236 GLU237 ALA238 GLN239 HIS240 ASP241 ALA242 TYR243 ASN244 PRO245 PHE246 ASP247 THR248 GLU249 GLN250 LEU251 VAL252 ILE253 CYS254 SER255 LEU256 ASP257 PHE258 ALA259 ARG260 ARG261 SER262 LYS263 GLN264 ARG265 LEU266 GLU267 HIS268 LEU269 CYS270 GLU271 ALA272 GLU273 TRP274 ASP275 LEU276 LEU277 VAL278 VAL279 ASP280 GLU281 ALA282 HIS283 HIS284 LEU285 VAL286 TRP287 SER288 GLU289 ASP290 ALA291 PRO292 SER293 ARG294 GLU295 TYR296 GLN297 ALA298 ILE299 GLU300 GLN301 LEU302 ALA303 GLU304 HIS305 VAL306 PRO307 GLY308 VAL309 LEU310 LEU311 LEU312 THR313 ALA314 THR315 PRO316 GLU317 GLN318 LEU319 GLY320 MSE321 GLU322 SER323 HIS324 PHE325 ALA326 ARG327 LEU328 ARG329 LEU330 LEU331 ASP332 PRO333 ASN334 ARG335 PHE336 HIS337 ASP338 PHE339 ALA340 GLN341 PHE342 VAL343 GLU344 GLU345 GLN346 LYS347 ASN348 TYR349 ARG350 PRO351 VAL352 ALA353 ASP354 ALA355 VAL356 ALA357 MSE358 LEU359 LEU360 ALA361 GLY362 ASN363 LYS364 LEU365 SER366 ASN367 ASP368 GLU369 LEU370 ASN371 MSE372 LEU373 GLY374 GLU375 MSE376 ILE377 GLY378 GLU379 GLN380 ASP381 ILE382 GLU383 PRO384 LEU385 LEU386 GLN387 ALA388 ALA389 ASN390 SER391 ASP392 SER393 GLU394 ASP395 ALA396 GLN397 SER398 ALA399 ARG400 GLN401 GLU402 LEU403 VAL404 SER405 MSE406 LEU407 MSE408 ASP409 ARG410 HIS411 GLY412 THR413 SER414 ARG415 VAL416 LEU417 PHE418 ARG419 ASN420 THR421 ARG422 ASN423 GLY424 VAL425 LYS426 GLY427 PHE428 PRO429 LYS430 ARG431 GLU432 LEU433 HIS434 THR435 ILE436 LYS437 LEU438 PRO439 LEU440 PRO441 THR442 GLN443 TYR444 GLN445 THR446 ALA447 ILE448 LYS449 VAL450 SER451 GLY452 ILE453 MSE454 GLY455 ALA456 ARG457 LYS458 SER459 ALA460 GLU461 ASP462 ARG463 ALA464 ARG465 ASP466 MSE467 LEU468 TYR469 PRO470 GLU471 ARG472 ILE473 TYR474 GLN475 GLU476 PHE477 GLU478 GLY479 ASP480 ASN481 ALA482 THR483 TRP484 TRP485 ASN486 PHE487 ASP488 PRO489 ARG490 VAL491 GLU492 TRP493 LEU494 MSE495 GLY496 TYR497 LEU498 THR499 SER500 HIS501 ARG502 SER503 GLN504 LYS505 VAL506 LEU507 VAL508 ILE509 CYS510 ALA511 LYS512 ALA513 ALA514 THR515 ALA516 LEU517 GLN518 LEU519 GLU520 GLN521 VAL522 LEU523 ARG524 GLU525 ARG526 GLU527 GLY528 ILE529 ARG530 ALA531 ALA532 VAL533 PHE534 HIS535 GLU536 GLY537 MSE538 SER539 ILE540 ILE541 GLU542 ARG543 ASP544 ARG545 ALA546 ALA547 ALA548 TRP549 PHE550 ALA551 GLU552 GLU553 ASP554 THR555 GLY556 ALA557 GLN558 VAL559 LEU560 LEU561 CYS562 SER563 GLU564 ILE565 GLY566 SER567 GLU568 GLY569 ARG570 ASN571 PHE572 GLN573 PHE574 ALA575 SER576 HIS577 MSE578 VAL579 MSE580 PHE581 ASP582 LEU583 PRO584 PHE585 ASN586 PRO587 ASP588 LEU589 LEU590 GLU591 GLN592 ARG593 ILE594 GLY595 ARG596 LEU597 ASP598 ARG599 ILE600 GLY601 GLN602 ALA603 HIS604 ASP605 ILE606 GLN607 ILE608 HIS609 VAL610 PRO611 TYR612 LEU613 GLU614 LYS615 THR616 ALA617 GLN618 SER619 VAL620 LEU621 VAL622 ARG623 TRP624 TYR625 HIS626 GLU627 GLY628 LEU629 ASP630 ALA631 PHE632 GLU633 HIS634 THR635 CYS636 PRO637 THR638 GLY639 ARG640 THR641 ILE642 TYR643 ASP644 SER645 VAL646 TYR647 ASN648 ASP649 LEU650 ILE651 ASN652 TYR653 LEU654 ALA655 SER656 PRO657 ASP658 GLN659 THR660 GLU661 GLY662 PHE663 ASP664 ASP665 LEU666 ILE667 LYS668 ASN669 CYS670 ARG671 GLU672 GLN673 HIS674 GLU675 ALA676 LEU677 LYS678 ALA679 GLN680 LEU681 GLU682 GLN683 GLY684 ARG685 ASP686 ARG687 LEU688 LEU689 GLU690 ILE691 HIS692 SER693 ASN694 GLY695 GLY696 GLU697 LYS698 ALA699 GLN700 ALA701 LEU702 ALA703 GLU704 SER705 ILE706 GLU707 GLU708 GLN709 ASP710 ASP711 ASP712 THR713 ASN714 LEU715 ILE716 ALA717 PHE718 ALA719 MSE720 ASN721 LEU722 PHE723 ASP724 ILE725 ILE726 GLY727 ILE728 ASN729 GLN730 ASP731 ASP732 ARG733 GLY734 ASP735 ASN736 MSE737 ILE738 VAL739 LEU740 THR741 PRO742 SER743 ASP744 HIS745 MSE746 LEU747 VAL748 PRO749 ASP750 PHE751 PRO752 GLY753 LEU754 SER755 GLU756 ASP757 GLY758 ILE759 THR760 ILE761 THR762 PHE763 ASP764 ARG765 GLU766 VAL767 ALA768 LEU769 ALA770 ARG771 GLU772 ASP773 ALA774 GLN775 PHE776 ILE777 THR778 TRP779 GLU780 HIS781 PRO782 LEU783 ILE784 ARG785 ASN786 GLY787 LEU788 ASP789 LEU790 ILE791 LEU792 SER793 GLY794 ASP795 THR796 GLY797 SER798 SER799 THR800 ILE801 SER802 LEU803 LEU804 LYS805 ASN806 LYS807 ALA808 LEU809 PRO810 VAL811 GLY812 THR813 LEU814 LEU815 VAL816 GLU817 LEU818 ILE819 TYR820 VAL821 VAL822 GLU823 ALA824 GLN825 ALA826 PRO827 LYS828 GLN829 LEU830 GLN831 LEU832 ASN833 ARG834 PHE835 LEU836 PRO837 PRO838 THR839 PRO840 VAL841 ARG842 MSE843 LEU844 LEU845 ASP846 LYS847 ASN848 GLY849 ASN850 ASN851 LEU852 ALA853 ALA854 GLN855 VAL856 GLU857 PHE858 GLU859 THR860 PHE861 ASN862 ARG863 GLN864 LEU865 ASN866 ALA867 VAL868 ASN869 ARG870 HIS871 THR872 GLY873 SER874 LYS875 LEU876 VAL877 ASN878 ALA879 VAL880 GLN881 GLN882 ASP883 VAL884 HIS885 ALA886 ILE887 LEU888 GLN889 LEU890 GLY891 GLU892 ALA893 GLN894 ILE895 GLU896 LYS897 SER898 ALA899 ARG900 ALA901 LEU902 ILE903 ASP904 ALA905 ALA906 ARG907 ASN908 GLU909 ALA910 ASP911 GLU912 LYS913 LEU914 SER915 ALA916 GLU917 LEU918 SER919 ARG920 LEU921 GLU922 ALA923 LEU924 ARG925 ALA926 VAL927 ASN928 PRO929 ASN930 ILE931 ARG932 ASP933 ASP934 GLU935 LEU936 THR937 ALA938 ILE939 GLU940 SER941 ASN942 ARG943 GLN944 GLN945 VAL946 MSE947 GLU948 SER949 LEU950 ASP951 GLN952 ALA953 GLY954 TRP955 ARG956 LEU957 ASP958 ALA959 LEU960 ARG961 LEU962 ILE963 VAL964 VAL965 THR966 HIS967 GLN968
Ligands
Unit 3 SO41001 SO41002 SO41003
Unit 4 SO41001 SO41002 SO41003 SO41004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany