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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF AMINO ACID RACEMASE, 2.12 A
Keywords PLP-DEPENDENT ENZYME, FOLD TYPE I, ISOMERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5WYF     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ISOLEUCINE 2-EPIMERASE  A 446 3449 0
2  Protein   ISOLEUCINE 2-EPIMERASE  B 444 3437 0
3  Protein   ISOLEUCINE 2-EPIMERASE  C 446 3449 0
4  Protein   ISOLEUCINE 2-EPIMERASE  D 444 3437 0
5  Ligand   ISOLEUCINE 2-EPIMERASE  A 11 0 34
6  Ligand   ISOLEUCINE 2-EPIMERASE  B 9 0 32
7  Ligand   ISOLEUCINE 2-EPIMERASE  C 11 0 34
8  Ligand   ISOLEUCINE 2-EPIMERASE  D 9 0 32
9 Water     423 0 423
total       2243 13772 555
Proteins
Unit 1 MET1 GLY2 LYS3 LEU4 ASP5 LYS6 ALA7 SER8 LYS9 LEU10 ILE11 ASP12 GLU13 GLU14 ASN15 LYS16 TYR17 TYR18 ALA19 ARG20 SER21 ALA22 ARG23 ILE24 ASN25 TYR26 TYR27 ASN28 LEU29 VAL30 ILE31 ASP32 HIS33 ALA34 HIS35 GLY36 ALA37 THR38 LEU39 VAL40 ASP41 VAL42 ASP43 GLY44 ASN45 LYS46 TYR47 ILE48 ASP49 LEU50 LEU51 ALA52 SER53 ALA54 SER55 ALA56 ILE57 ASN58 VAL59 GLY60 HIS61 THR62 HIS63 GLU64 LYS65 VAL66 VAL67 LYS68 ALA69 ILE70 ALA71 ASP72 GLN73 ALA74 GLN75 LYS76 LEU77 ILE78 HIS79 TYR80 THR81 PRO82 ALA83 TYR84 PHE85 HIS86 HIS87 VAL88 PRO89 GLY90 MET91 GLU92 LEU93 SER94 GLU95 LYS96 LEU97 ALA98 LYS99 ILE100 ALA101 PRO102 GLY103 ASN104 SER105 PRO106 LYS107 MET108 VAL109 SER110 PHE111 GLY112 ASN113 SER114 GLY115 SER116 ASP117 ALA118 ASN119 ASP120 ALA121 ILE122 ILE123 LYS124 PHE125 ALA126 ARG127 ALA128 TYR129 THR130 GLY131 ARG132 GLN133 TYR134 ILE135 VAL136 SER137 TYR138 MET139 GLY140 SER141 TYR142 HIS143 GLY144 SER145 THR146 TYR147 GLY148 SER149 GLN150 THR151 LEU152 SER153 GLY154 SER155 SER156 LEU157 ASN158 MET159 THR160 ARG161 LYS162 ILE163 GLY164 PRO165 MET166 LEU167 PRO168 SER169 VAL170 VAL171 HIS172 VAL173 PRO174 TYR175 PRO176 ASP177 SER178 TYR179 ARG180 THR181 TYR182 PRO183 GLY184 GLU185 THR186 GLU187 HIS188 ASP189 VAL190 SER191 LEU192 ARG193 TYR194 PHE195 ASN196 GLU197 PHE198 LYS199 LYS200 PRO201 PHE202 GLU203 SER204 PHE205 LEU206 PRO207 ALA208 ASP209 GLU210 THR211 ALA212 CYS213 VAL214 LEU215 ILE216 GLU217 PRO218 ILE219 GLN220 GLY221 ASP222 GLY223 GLY224 ILE225 ILE226 LYS227 ALA228 PRO229 GLU230 GLU231 TYR232 MET233 GLN234 LEU235 VAL236 TYR237 LYS238 PHE239 CYS240 HIS241 GLU242 HIS243 GLY244 ILE245 LEU246 PHE247 ALA248 ILE249 ASP250 GLU251 VAL252 ASN253 GLN254 GLY255 LEU256 GLY257 ARG258 THR259 GLY260 LYS261 MET262 TRP263 ALA264 ILE265 GLN266 GLN267 PHE268 LYS269 ASP270 ILE271 GLU272 PRO273 ASP274 LEU275 MET276 SER277 VAL278 GLY279 LYS280 SER281 LEU282 ALA283 SER284 GLY285 MET286 PRO287 LEU288 SER289 ALA290 VAL291 ILE292 GLY293 LYS294 LYS295 GLU296 VAL297 MET298 GLN299 SER300 LEU301 ASP302 ALA303 PRO304 ALA305 HIS306 LEU307 PHE308 THR309 THR310 ALA311 GLY312 ASN313 PRO314 VAL315 CYS316 SER317 ALA318 ALA319 SER320 LEU321 ALA322 THR323 LEU324 ASP325 VAL326 ILE327 GLU328 TYR329 GLU330 GLY331 LEU332 VAL333 GLU334 LYS335 SER336 ALA337 THR338 ASP339 GLY340 ALA341 TYR342 ALA343 LYS344 GLN345 ARG346 PHE347 LEU348 GLU349 MET350 GLN351 GLN352 ARG353 HIS354 PRO355 MET356 ILE357 GLY358 ASP359 VAL360 ARG361 MET362 TRP363 GLY364 LEU365 ASN366 GLY367 GLY368 ILE369 GLU370 LEU371 VAL372 LYS373 ASP374 PRO375 LYS376 THR377 LYS378 GLU379 PRO380 ASP381 SER382 ASP383 ALA384 ALA385 THR386 LYS387 VAL388 ILE389 TYR390 TYR391 ALA392 PHE393 ALA394 HIS395 GLY396 VAL397 VAL398 ILE399 ILE400 THR401 LEU402 ALA403 GLY404 ASN405 ILE406 LEU407 ARG408 PHE409 GLN410 PRO411 PRO412 LEU413 VAL414 ILE415 PRO416 ARG417 GLU418 GLN419 LEU420 ASP421 GLN422 ALA423 LEU424 GLN425 VAL426 LEU427 ASP428 ASP429 ALA430 PHE431 THR432 ALA433 VAL434 GLU435 ASN436 GLY437 GLU438 VAL439 THR440 ILE441 GLY446 LYS447 ILE448 GLY449 TRP450
Unit 2 LYS3 LEU4 ASP5 LYS6 ALA7 SER8 LYS9 LEU10 ILE11 ASP12 GLU13 GLU14 ASN15 LYS16 TYR17 TYR18 ALA19 ARG20 SER21 ALA22 ARG23 ILE24 ASN25 TYR26 TYR27 ASN28 LEU29 VAL30 ILE31 ASP32 HIS33 ALA34 HIS35 GLY36 ALA37 THR38 LEU39 VAL40 ASP41 VAL42 ASP43 GLY44 ASN45 LYS46 TYR47 ILE48 ASP49 LEU50 LEU51 ALA52 SER53 ALA54 SER55 ALA56 ILE57 ASN58 VAL59 GLY60 HIS61 THR62 HIS63 GLU64 LYS65 VAL66 VAL67 LYS68 ALA69 ILE70 ALA71 ASP72 GLN73 ALA74 GLN75 LYS76 LEU77 ILE78 HIS79 TYR80 THR81 PRO82 ALA83 TYR84 PHE85 HIS86 HIS87 VAL88 PRO89 GLY90 MET91 GLU92 LEU93 SER94 GLU95 LYS96 LEU97 ALA98 LYS99 ILE100 ALA101 PRO102 GLY103 ASN104 SER105 PRO106 LYS107 MET108 VAL109 SER110 PHE111 GLY112 ASN113 SER114 GLY115 SER116 ASP117 ALA118 ASN119 ASP120 ALA121 ILE122 ILE123 LYS124 PHE125 ALA126 ARG127 ALA128 TYR129 THR130 GLY131 ARG132 GLN133 TYR134 ILE135 VAL136 SER137 TYR138 MET139 GLY140 SER141 TYR142 HIS143 GLY144 SER145 THR146 TYR147 GLY148 SER149 GLN150 THR151 LEU152 SER153 GLY154 SER155 SER156 LEU157 ASN158 MET159 THR160 ARG161 LYS162 ILE163 GLY164 PRO165 MET166 LEU167 PRO168 SER169 VAL170 VAL171 HIS172 VAL173 PRO174 TYR175 PRO176 ASP177 SER178 TYR179 ARG180 THR181 TYR182 PRO183 GLY184 GLU185 THR186 GLU187 HIS188 ASP189 VAL190 SER191 LEU192 ARG193 TYR194 PHE195 ASN196 GLU197 PHE198 LYS199 LYS200 PRO201 PHE202 GLU203 SER204 PHE205 LEU206 PRO207 ALA208 ASP209 GLU210 THR211 ALA212 CYS213 VAL214 LEU215 ILE216 GLU217 PRO218 ILE219 GLN220 GLY221 ASP222 GLY223 GLY224 ILE225 ILE226 LYS227 ALA228 PRO229 GLU230 GLU231 TYR232 MET233 GLN234 LEU235 VAL236 TYR237 LYS238 PHE239 CYS240 HIS241 GLU242 HIS243 GLY244 ILE245 LEU246 PHE247 ALA248 ILE249 ASP250 GLU251 VAL252 ASN253 GLN254 GLY255 LEU256 GLY257 ARG258 THR259 GLY260 LYS261 MET262 TRP263 ALA264 ILE265 GLN266 GLN267 PHE268 LYS269 ASP270 ILE271 GLU272 PRO273 ASP274 LEU275 MET276 SER277 VAL278 GLY279 LYS280 SER281 LEU282 ALA283 SER284 GLY285 MET286 PRO287 LEU288 SER289 ALA290 VAL291 ILE292 GLY293 LYS294 LYS295 GLU296 VAL297 MET298 GLN299 SER300 LEU301 ASP302 ALA303 PRO304 ALA305 HIS306 LEU307 PHE308 THR309 THR310 ALA311 GLY312 ASN313 PRO314 VAL315 CYS316 SER317 ALA318 ALA319 SER320 LEU321 ALA322 THR323 LEU324 ASP325 VAL326 ILE327 GLU328 TYR329 GLU330 GLY331 LEU332 VAL333 GLU334 LYS335 SER336 ALA337 THR338 ASP339 GLY340 ALA341 TYR342 ALA343 LYS344 GLN345 ARG346 PHE347 LEU348 GLU349 MET350 GLN351 GLN352 ARG353 HIS354 PRO355 MET356 ILE357 GLY358 ASP359 VAL360 ARG361 MET362 TRP363 GLY364 LEU365 ASN366 GLY367 GLY368 ILE369 GLU370 LEU371 VAL372 LYS373 ASP374 PRO375 LYS376 THR377 LYS378 GLU379 PRO380 ASP381 SER382 ASP383 ALA384 ALA385 THR386 LYS387 VAL388 ILE389 TYR390 TYR391 ALA392 PHE393 ALA394 HIS395 GLY396 VAL397 VAL398 ILE399 ILE400 THR401 LEU402 ALA403 GLY404 ASN405 ILE406 LEU407 ARG408 PHE409 GLN410 PRO411 PRO412 LEU413 VAL414 ILE415 PRO416 ARG417 GLU418 GLN419 LEU420 ASP421 GLN422 ALA423 LEU424 GLN425 VAL426 LEU427 ASP428 ASP429 ALA430 PHE431 THR432 ALA433 VAL434 GLU435 ASN436 GLY437 GLU438 VAL439 THR440 ILE441 GLY446 LYS447 ILE448 GLY449 TRP450
Unit 3 MET1 GLY2 LYS3 LEU4 ASP5 LYS6 ALA7 SER8 LYS9 LEU10 ILE11 ASP12 GLU13 GLU14 ASN15 LYS16 TYR17 TYR18 ALA19 ARG20 SER21 ALA22 ARG23 ILE24 ASN25 TYR26 TYR27 ASN28 LEU29 VAL30 ILE31 ASP32 HIS33 ALA34 HIS35 GLY36 ALA37 THR38 LEU39 VAL40 ASP41 VAL42 ASP43 GLY44 ASN45 LYS46 TYR47 ILE48 ASP49 LEU50 LEU51 ALA52 SER53 ALA54 SER55 ALA56 ILE57 ASN58 VAL59 GLY60 HIS61 THR62 HIS63 GLU64 LYS65 VAL66 VAL67 LYS68 ALA69 ILE70 ALA71 ASP72 GLN73 ALA74 GLN75 LYS76 LEU77 ILE78 HIS79 TYR80 THR81 PRO82 ALA83 TYR84 PHE85 HIS86 HIS87 VAL88 PRO89 GLY90 MET91 GLU92 LEU93 SER94 GLU95 LYS96 LEU97 ALA98 LYS99 ILE100 ALA101 PRO102 GLY103 ASN104 SER105 PRO106 LYS107 MET108 VAL109 SER110 PHE111 GLY112 ASN113 SER114 GLY115 SER116 ASP117 ALA118 ASN119 ASP120 ALA121 ILE122 ILE123 LYS124 PHE125 ALA126 ARG127 ALA128 TYR129 THR130 GLY131 ARG132 GLN133 TYR134 ILE135 VAL136 SER137 TYR138 MET139 GLY140 SER141 TYR142 HIS143 GLY144 SER145 THR146 TYR147 GLY148 SER149 GLN150 THR151 LEU152 SER153 GLY154 SER155 SER156 LEU157 ASN158 MET159 THR160 ARG161 LYS162 ILE163 GLY164 PRO165 MET166 LEU167 PRO168 SER169 VAL170 VAL171 HIS172 VAL173 PRO174 TYR175 PRO176 ASP177 SER178 TYR179 ARG180 THR181 TYR182 PRO183 GLY184 GLU185 THR186 GLU187 HIS188 ASP189 VAL190 SER191 LEU192 ARG193 TYR194 PHE195 ASN196 GLU197 PHE198 LYS199 LYS200 PRO201 PHE202 GLU203 SER204 PHE205 LEU206 PRO207 ALA208 ASP209 GLU210 THR211 ALA212 CYS213 VAL214 LEU215 ILE216 GLU217 PRO218 ILE219 GLN220 GLY221 ASP222 GLY223 GLY224 ILE225 ILE226 LYS227 ALA228 PRO229 GLU230 GLU231 TYR232 MET233 GLN234 LEU235 VAL236 TYR237 LYS238 PHE239 CYS240 HIS241 GLU242 HIS243 GLY244 ILE245 LEU246 PHE247 ALA248 ILE249 ASP250 GLU251 VAL252 ASN253 GLN254 GLY255 LEU256 GLY257 ARG258 THR259 GLY260 LYS261 MET262 TRP263 ALA264 ILE265 GLN266 GLN267 PHE268 LYS269 ASP270 ILE271 GLU272 PRO273 ASP274 LEU275 MET276 SER277 VAL278 GLY279 LYS280 SER281 LEU282 ALA283 SER284 GLY285 MET286 PRO287 LEU288 SER289 ALA290 VAL291 ILE292 GLY293 LYS294 LYS295 GLU296 VAL297 MET298 GLN299 SER300 LEU301 ASP302 ALA303 PRO304 ALA305 HIS306 LEU307 PHE308 THR309 THR310 ALA311 GLY312 ASN313 PRO314 VAL315 CYS316 SER317 ALA318 ALA319 SER320 LEU321 ALA322 THR323 LEU324 ASP325 VAL326 ILE327 GLU328 TYR329 GLU330 GLY331 LEU332 VAL333 GLU334 LYS335 SER336 ALA337 THR338 ASP339 GLY340 ALA341 TYR342 ALA343 LYS344 GLN345 ARG346 PHE347 LEU348 GLU349 MET350 GLN351 GLN352 ARG353 HIS354 PRO355 MET356 ILE357 GLY358 ASP359 VAL360 ARG361 MET362 TRP363 GLY364 LEU365 ASN366 GLY367 GLY368 ILE369 GLU370 LEU371 VAL372 LYS373 ASP374 PRO375 LYS376 THR377 LYS378 GLU379 PRO380 ASP381 SER382 ASP383 ALA384 ALA385 THR386 LYS387 VAL388 ILE389 TYR390 TYR391 ALA392 PHE393 ALA394 HIS395 GLY396 VAL397 VAL398 ILE399 ILE400 THR401 LEU402 ALA403 GLY404 ASN405 ILE406 LEU407 ARG408 PHE409 GLN410 PRO411 PRO412 LEU413 VAL414 ILE415 PRO416 ARG417 GLU418 GLN419 LEU420 ASP421 GLN422 ALA423 LEU424 GLN425 VAL426 LEU427 ASP428 ASP429 ALA430 PHE431 THR432 ALA433 VAL434 GLU435 ASN436 GLY437 GLU438 VAL439 THR440 ILE441 GLY446 LYS447 ILE448 GLY449 TRP450
Unit 4 LYS3 LEU4 ASP5 LYS6 ALA7 SER8 LYS9 LEU10 ILE11 ASP12 GLU13 GLU14 ASN15 LYS16 TYR17 TYR18 ALA19 ARG20 SER21 ALA22 ARG23 ILE24 ASN25 TYR26 TYR27 ASN28 LEU29 VAL30 ILE31 ASP32 HIS33 ALA34 HIS35 GLY36 ALA37 THR38 LEU39 VAL40 ASP41 VAL42 ASP43 GLY44 ASN45 LYS46 TYR47 ILE48 ASP49 LEU50 LEU51 ALA52 SER53 ALA54 SER55 ALA56 ILE57 ASN58 VAL59 GLY60 HIS61 THR62 HIS63 GLU64 LYS65 VAL66 VAL67 LYS68 ALA69 ILE70 ALA71 ASP72 GLN73 ALA74 GLN75 LYS76 LEU77 ILE78 HIS79 TYR80 THR81 PRO82 ALA83 TYR84 PHE85 HIS86 HIS87 VAL88 PRO89 GLY90 MET91 GLU92 LEU93 SER94 GLU95 LYS96 LEU97 ALA98 LYS99 ILE100 ALA101 PRO102 GLY103 ASN104 SER105 PRO106 LYS107 MET108 VAL109 SER110 PHE111 GLY112 ASN113 SER114 GLY115 SER116 ASP117 ALA118 ASN119 ASP120 ALA121 ILE122 ILE123 LYS124 PHE125 ALA126 ARG127 ALA128 TYR129 THR130 GLY131 ARG132 GLN133 TYR134 ILE135 VAL136 SER137 TYR138 MET139 GLY140 SER141 TYR142 HIS143 GLY144 SER145 THR146 TYR147 GLY148 SER149 GLN150 THR151 LEU152 SER153 GLY154 SER155 SER156 LEU157 ASN158 MET159 THR160 ARG161 LYS162 ILE163 GLY164 PRO165 MET166 LEU167 PRO168 SER169 VAL170 VAL171 HIS172 VAL173 PRO174 TYR175 PRO176 ASP177 SER178 TYR179 ARG180 THR181 TYR182 PRO183 GLY184 GLU185 THR186 GLU187 HIS188 ASP189 VAL190 SER191 LEU192 ARG193 TYR194 PHE195 ASN196 GLU197 PHE198 LYS199 LYS200 PRO201 PHE202 GLU203 SER204 PHE205 LEU206 PRO207 ALA208 ASP209 GLU210 THR211 ALA212 CYS213 VAL214 LEU215 ILE216 GLU217 PRO218 ILE219 GLN220 GLY221 ASP222 GLY223 GLY224 ILE225 ILE226 LYS227 ALA228 PRO229 GLU230 GLU231 TYR232 MET233 GLN234 LEU235 VAL236 TYR237 LYS238 PHE239 CYS240 HIS241 GLU242 HIS243 GLY244 ILE245 LEU246 PHE247 ALA248 ILE249 ASP250 GLU251 VAL252 ASN253 GLN254 GLY255 LEU256 GLY257 ARG258 THR259 GLY260 LYS261 MET262 TRP263 ALA264 ILE265 GLN266 GLN267 PHE268 LYS269 ASP270 ILE271 GLU272 PRO273 ASP274 LEU275 MET276 SER277 VAL278 GLY279 LYS280 SER281 LEU282 ALA283 SER284 GLY285 MET286 PRO287 LEU288 SER289 ALA290 VAL291 ILE292 GLY293 LYS294 LYS295 GLU296 VAL297 MET298 GLN299 SER300 LEU301 ASP302 ALA303 PRO304 ALA305 HIS306 LEU307 PHE308 THR309 THR310 ALA311 GLY312 ASN313 PRO314 VAL315 CYS316 SER317 ALA318 ALA319 SER320 LEU321 ALA322 THR323 LEU324 ASP325 VAL326 ILE327 GLU328 TYR329 GLU330 GLY331 LEU332 VAL333 GLU334 LYS335 SER336 ALA337 THR338 ASP339 GLY340 ALA341 TYR342 ALA343 LYS344 GLN345 ARG346 PHE347 LEU348 GLU349 MET350 GLN351 GLN352 ARG353 HIS354 PRO355 MET356 ILE357 GLY358 ASP359 VAL360 ARG361 MET362 TRP363 GLY364 LEU365 ASN366 GLY367 GLY368 ILE369 GLU370 LEU371 VAL372 LYS373 ASP374 PRO375 LYS376 THR377 LYS378 GLU379 PRO380 ASP381 SER382 ASP383 ALA384 ALA385 THR386 LYS387 VAL388 ILE389 TYR390 TYR391 ALA392 PHE393 ALA394 HIS395 GLY396 VAL397 VAL398 ILE399 ILE400 THR401 LEU402 ALA403 GLY404 ASN405 ILE406 LEU407 ARG408 PHE409 GLN410 PRO411 PRO412 LEU413 VAL414 ILE415 PRO416 ARG417 GLU418 GLN419 LEU420 ASP421 GLN422 ALA423 LEU424 GLN425 VAL426 LEU427 ASP428 ASP429 ALA430 PHE431 THR432 ALA433 VAL434 GLU435 ASN436 GLY437 GLU438 VAL439 THR440 ILE441 GLY446 LYS447 ILE448 GLY449 TRP450
Ligands
Unit 5 ILP1001 CD1002 CD1003 CD1004 CD1005 CD1006 CD1007 CD1008 CD1009 CD1010 CD1011
Unit 6 ILP1001 CD1002 CD1003 CD1004 CD1005 CD1006 CD1007 CD1008 CD1009
Unit 7 ILP1001 CD1002 CD1003 CD1004 CD1005 CD1006 CD1007 CD1008 CD1009 CD1010 CD1011
Unit 8 ILP1001 CD1002 CD1003 CD1004 CD1005 CD1006 CD1007 CD1008 CD1009
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany