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Sequence, Chains, Asymmetric and Biological Units

Title LCD1 GAF DOMAIN IN COMPLEX WITH CAMP LIGAND
Keywords GAF DOMAIN, CAMP BINDING DOMAIN, EFFECTOR DOMAIN, REGULATES ACTIVITY OF THE GGDEF DOMAIN, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5W10     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CGMP-SPECIFIC PHOSPHODIESTERASE  A 173 1357 24
2  Protein   CGMP-SPECIFIC PHOSPHODIESTERASE  B 172 1349 24
3  Protein   CGMP-SPECIFIC PHOSPHODIESTERASE  C 171 1336 32
4  Protein   CGMP-SPECIFIC PHOSPHODIESTERASE  D 170 1325 32
5  Ligand   CGMP-SPECIFIC PHOSPHODIESTERASE  A 1 0 22
6  Ligand   CGMP-SPECIFIC PHOSPHODIESTERASE  B 1 0 22
7  Ligand   CGMP-SPECIFIC PHOSPHODIESTERASE  C 1 0 22
8  Ligand   CGMP-SPECIFIC PHOSPHODIESTERASE  D 1 0 22
9 Water     346 0 346
total       1036 5367 546

Proteins
Unit 1 LEU3 LYS4 ASP5 SER6 LYS7 PRO8 GLU9 LEU10 ILE11 LYS12 LEU13 TYR14 SER15 SER16 LEU17 GLY18 LYS19 ILE20 ILE21 THR22 SER23 SER24 LEU25 GLU26 GLN27 GLN28 GLU29 VAL30 LEU31 SER32 ALA33 VAL34 MSE35 GLU36 GLU37 VAL38 ARG39 LEU40 PHE41 PHE42 SER43 PRO44 LYS45 ASN46 TRP47 SER48 LEU49 MSE50 ARG51 TYR52 ASP53 GLU54 ASN55 SER56 GLU57 GLU58 LEU59 PHE60 PHE61 LEU62 ILE63 ALA64 GLU65 GLY66 ILE67 GLN68 PHE69 ASN70 HIS71 ILE72 ARG73 SER74 ILE75 ARG76 LEU77 LYS78 SER79 GLY80 GLU81 GLY82 ILE83 ALA84 GLY85 SER86 VAL87 VAL88 GLN89 THR90 LYS91 SER92 PRO93 ILE94 PHE95 VAL96 GLU97 ASN98 VAL99 LYS100 ASN101 ASP102 PRO103 ARG104 PHE105 SER106 LYS107 LYS108 VAL109 ASP110 GLU111 LYS112 THR113 GLY114 PHE115 GLU116 THR117 LYS118 THR119 ILE120 ILE121 ALA122 VAL123 PRO124 MSE125 ILE126 PHE127 ARG128 GLY129 GLU130 VAL131 HIS132 GLY133 VAL134 ILE135 GLU136 LEU137 VAL138 ASN139 ARG140 PHE141 ASP142 GLY143 SER144 SER145 PHE146 SER147 PRO148 GLU149 ASP150 LEU151 VAL152 ILE153 LEU154 GLN155 THR156 ILE157 ALA158 ASP159 PHE160 THR161 ALA162 ILE163 SER164 LEU165 ALA166 HIS167 SER168 ASP169 GLN170 TYR171 GLU172 LYS173 THR174 LYS175
Unit 2 LYS4 ASP5 SER6 LYS7 PRO8 GLU9 LEU10 ILE11 LYS12 LEU13 TYR14 SER15 SER16 LEU17 GLY18 LYS19 ILE20 ILE21 THR22 SER23 SER24 LEU25 GLU26 GLN27 GLN28 GLU29 VAL30 LEU31 SER32 ALA33 VAL34 MSE35 GLU36 GLU37 VAL38 ARG39 LEU40 PHE41 PHE42 SER43 PRO44 LYS45 ASN46 TRP47 SER48 LEU49 MSE50 ARG51 TYR52 ASP53 GLU54 ASN55 SER56 GLU57 GLU58 LEU59 PHE60 PHE61 LEU62 ILE63 ALA64 GLU65 GLY66 ILE67 GLN68 PHE69 ASN70 HIS71 ILE72 ARG73 SER74 ILE75 ARG76 LEU77 LYS78 SER79 GLY80 GLU81 GLY82 ILE83 ALA84 GLY85 SER86 VAL87 VAL88 GLN89 THR90 LYS91 SER92 PRO93 ILE94 PHE95 VAL96 GLU97 ASN98 VAL99 LYS100 ASN101 ASP102 PRO103 ARG104 PHE105 SER106 LYS107 LYS108 VAL109 ASP110 GLU111 LYS112 THR113 GLY114 PHE115 GLU116 THR117 LYS118 THR119 ILE120 ILE121 ALA122 VAL123 PRO124 MSE125 ILE126 PHE127 ARG128 GLY129 GLU130 VAL131 HIS132 GLY133 VAL134 ILE135 GLU136 LEU137 VAL138 ASN139 ARG140 PHE141 ASP142 GLY143 SER144 SER145 PHE146 SER147 PRO148 GLU149 ASP150 LEU151 VAL152 ILE153 LEU154 GLN155 THR156 ILE157 ALA158 ASP159 PHE160 THR161 ALA162 ILE163 SER164 LEU165 ALA166 HIS167 SER168 ASP169 GLN170 TYR171 GLU172 LYS173 THR174 LYS175
Unit 3 MSE1 THR2 LEU3 LYS4 ASP5 SER6 LYS7 PRO8 GLU9 LEU10 ILE11 LYS12 LEU13 TYR14 SER15 SER16 LEU17 GLY18 LYS19 ILE20 ILE21 THR22 SER23 SER24 LEU25 GLU26 GLN27 GLN28 GLU29 VAL30 LEU31 SER32 ALA33 VAL34 MSE35 GLU36 GLU37 VAL38 ARG39 LEU40 PHE41 PHE42 SER43 PRO44 LYS45 ASN46 TRP47 SER48 LEU49 MSE50 ARG51 TYR52 ASP53 GLU54 ASN55 SER56 GLU57 GLU58 LEU59 PHE60 PHE61 LEU62 ILE63 ALA64 GLU65 GLY66 ILE67 GLN68 PHE69 ASN70 HIS71 ILE72 ARG73 SER74 ILE75 ARG76 LEU77 LYS78 SER79 GLY80 GLU81 GLY82 ILE83 ALA84 GLY85 SER86 VAL87 VAL88 GLN89 THR90 LYS91 SER92 PRO93 ILE94 PHE95 VAL96 GLU97 ASN98 VAL99 LYS100 ASN101 ASP102 PRO103 ARG104 PHE105 SER106 LYS107 LYS108 VAL109 ASP110 GLU111 LYS112 THR113 GLY114 PHE115 GLU116 THR117 LYS118 THR119 ILE120 ILE121 ALA122 VAL123 PRO124 MSE125 ILE126 PHE127 ARG128 GLY129 GLU130 VAL131 HIS132 GLY133 VAL134 ILE135 GLU136 LEU137 VAL138 ASN139 ARG140 PHE141 SER145 PHE146 SER147 PRO148 GLU149 ASP150 LEU151 VAL152 ILE153 LEU154 GLN155 THR156 ILE157 ALA158 ASP159 PHE160 THR161 ALA162 ILE163 SER164 LEU165 ALA166 HIS167 SER168 ASP169 GLN170 TYR171 GLU172 LYS173 THR174
Unit 4 MSE1 THR2 LEU3 LYS4 ASP5 SER6 LYS7 PRO8 GLU9 LEU10 ILE11 LYS12 LEU13 TYR14 SER15 SER16 LEU17 GLY18 LYS19 ILE20 ILE21 THR22 SER23 SER24 LEU25 GLU26 GLN27 GLN28 GLU29 VAL30 LEU31 SER32 ALA33 VAL34 MSE35 GLU36 GLU37 VAL38 ARG39 LEU40 PHE41 PHE42 SER43 PRO44 LYS45 ASN46 TRP47 SER48 LEU49 MSE50 ARG51 TYR52 ASP53 GLU54 ASN55 SER56 GLU57 GLU58 LEU59 PHE60 PHE61 LEU62 ILE63 ALA64 GLU65 GLY66 ILE67 GLN68 PHE69 ASN70 HIS71 ILE72 ARG73 SER74 ILE75 ARG76 LEU77 LYS78 SER79 GLY80 GLU81 GLY82 ILE83 ALA84 GLY85 SER86 VAL87 VAL88 GLN89 THR90 LYS91 SER92 PRO93 ILE94 PHE95 VAL96 GLU97 ASN98 VAL99 LYS100 ASN101 ASP102 PRO103 ARG104 PHE105 SER106 LYS107 LYS108 VAL109 ASP110 GLU111 LYS112 THR113 GLY114 PHE115 GLU116 THR117 LYS118 THR119 ILE120 ILE121 ALA122 VAL123 PRO124 MSE125 ILE126 PHE127 ARG128 GLY129 GLU130 VAL131 HIS132 GLY133 VAL134 ILE135 GLU136 LEU137 VAL138 ASN139 ARG140 SER145 PHE146 SER147 PRO148 GLU149 ASP150 LEU151 VAL152 ILE153 LEU154 GLN155 THR156 ILE157 ALA158 ASP159 PHE160 THR161 ALA162 ILE163 SER164 LEU165 ALA166 HIS167 SER168 ASP169 GLN170 TYR171 GLU172 LYS173 THR174

Ligands
Unit 5 CMP201
Unit 6 CMP201
Unit 7 CMP201
Unit 8 CMP201

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany