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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HCMV PENTAMER IN COMPLEX WITH NEUTRALIZ ANTIBODY 8I21 - LOW RESOLUTION DATASET FOR INITIAL PHASING
Keywords HCMV, NEUTRALIZING EPITOPE, IMMUNOGEN, VIRAL ENTRY, PENTAMER VACCINE, IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5VOC     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENVELOPE GLYCOPROTEIN H  A 662 5321 0
2  Protein   ENVELOPE GLYCOPROTEIN L  B 237 1867 0
3  Protein   ENVELOPE GLYCOPROTEIN UL128  C 135 1090 0
4  Protein   ENVELOPE GLYCOPROTEIN UL130  D 170 1388 0
5  Protein   ENVELOPE GLYCOPROTEIN UL131A  E 108 893 0
6  Protein   FAB 8I21 HEAVY CHAIN  H 200 1540 0
7  Protein   FAB 8I21 LIGHT CHAIN  L 194 1493 0
8  Ligand    F 3 0 39
9  Ligand   ENVELOPE GLYCOPROTEIN H  A 3 0 42
10  Ligand   ENVELOPE GLYCOPROTEIN UL130  D 2 0 28
total       1714 13592 109

Proteins
Unit 1 LEU40 LEU41 LEU42 ASN43 THR44 TYR45 GLY46 ARG47 PRO48 ILE49 ARG50 PHE51 LEU52 ARG53 GLU54 ASN55 THR56 THR57 GLN58 CYS59 THR60 TYR61 ASN62 SER63 SER64 LEU65 ARG66 ASN67 SER68 THR69 VAL70 VAL71 ARG72 GLU73 ASN74 ALA75 ILE76 SER77 PHE78 ASN79 PHE80 PHE81 GLN82 SER83 TYR84 ASN85 GLN86 TYR87 TYR88 VAL89 PHE90 HIS91 MET92 PRO93 ARG94 CYS95 LEU96 PHE97 ALA98 GLY99 PRO100 LEU101 ALA102 GLU103 GLN104 PHE105 LEU106 ASN107 GLN108 VAL109 ASP110 LEU111 THR112 GLU113 THR114 LEU115 GLU116 ARG117 TYR118 GLN119 GLN120 ARG121 LEU122 ASN123 THR124 TYR125 ALA126 LEU127 VAL128 SER129 LYS130 ASP131 LEU132 ALA133 SER134 TYR135 ARG136 SER137 PHE138 SER139 GLN140 GLN141 LEU142 LYS143 ALA144 GLN145 ASP146 SER147 LEU148 GLY149 GLU150 GLN151 PRO152 THR153 THR154 VAL155 PRO156 PRO157 PRO158 ILE159 ASP160 LEU161 SER162 ILE163 PRO164 HIS165 VAL166 TRP167 MET168 PRO169 PRO170 GLN171 THR172 THR173 PRO174 HIS175 GLU179 SER180 HIS181 THR182 THR183 SER184 GLY185 LEU186 HIS187 ARG188 PRO189 HIS190 PHE191 ASN192 GLN193 THR194 CYS195 ILE196 LEU197 PHE198 ASP199 GLY200 HIS201 ASP202 LEU203 LEU204 PHE205 SER206 THR207 VAL208 THR209 PRO210 CYS211 LEU212 HIS213 GLN214 GLY215 PHE216 TYR217 LEU218 ILE219 ASP220 GLU221 LEU222 ARG223 TYR224 VAL225 LYS226 ILE227 THR228 LEU229 THR230 GLU231 ASP232 PHE233 PHE234 VAL235 VAL236 THR237 VAL238 SER239 ILE240 ASP241 ASP242 ASP243 THR244 PRO245 MET246 LEU247 LEU248 ILE249 PHE250 GLY251 HIS252 LEU253 PRO254 ARG255 VAL256 LEU257 PHE258 LYS259 ALA260 PRO261 TYR262 GLN263 ARG264 ASP265 ASN266 PHE267 ILE268 LEU269 ARG270 GLN271 THR272 GLU273 LYS274 HIS275 GLU276 LEU277 LEU278 VAL279 LEU280 VAL281 LYS282 LYS283 ASP284 GLN285 LEU286 ASN287 ARG288 HIS289 SER290 TYR291 LEU292 LYS293 ASP294 PRO295 ASP296 PHE297 LEU298 ASP299 ALA300 ALA301 LEU302 ASP303 PHE304 ASN305 TYR306 LEU307 ASP308 LEU309 SER310 ALA311 LEU312 LEU313 ARG314 ASN315 SER316 PHE317 HIS318 ARG319 TYR320 ALA321 VAL322 ASP323 VAL324 LEU325 LYS326 SER327 GLY328 ARG329 CYS330 GLN331 MET332 LEU333 ASP334 ARG335 ARG336 THR337 VAL338 GLU339 MET340 ALA341 PHE342 ALA343 TYR344 ALA345 LEU346 ALA347 LEU348 PHE349 ALA350 ALA351 ALA352 ARG353 GLN354 GLU355 GLU356 ALA357 GLY358 ALA359 GLN360 VAL361 SER362 VAL363 PRO364 ARG365 ALA366 LEU367 ASP368 ARG369 GLN370 ALA371 ALA372 LEU373 LEU374 GLN375 ILE376 GLN377 GLU378 PHE379 MET380 ILE381 THR382 CYS383 LEU384 SER385 GLN386 THR387 PRO388 PRO389 ARG390 THR391 THR392 LEU393 LEU394 LEU395 TYR396 PRO397 THR398 ALA399 VAL400 ASP401 LEU402 ALA403 LYS404 ARG405 ALA406 LEU407 TRP408 THR409 PRO410 ASN411 GLN412 ILE413 THR414 ASP415 ILE416 THR417 SER418 LEU419 VAL420 ARG421 LEU422 VAL423 TYR424 ILE425 LEU426 SER427 LYS428 GLN429 ASN430 GLN431 GLN432 HIS433 LEU434 ILE435 PRO436 GLN437 TRP438 ALA439 LEU440 ARG441 GLN442 ILE443 ALA444 ASP445 PHE446 ALA447 LEU448 LYS449 LEU450 HIS451 LYS452 THR453 HIS454 LEU455 ALA456 SER457 PHE458 LEU459 SER460 ALA461 PHE462 ALA463 ARG464 GLN465 GLU466 LEU467 TYR468 LEU469 MET470 GLY471 SER472 LEU473 VAL474 HIS475 SER476 MET477 LEU478 VAL479 HIS480 THR481 THR482 GLU483 ARG484 ARG485 GLU486 ILE487 PHE488 ILE489 VAL490 GLU491 THR492 GLY493 LEU494 CYS495 SER496 LEU497 ALA498 GLU499 LEU500 SER501 HIS502 PHE503 THR504 GLN505 LEU506 LEU507 ALA508 HIS509 PRO510 HIS511 HIS512 GLU513 TYR514 LEU515 SER516 ASP517 LEU518 TYR519 THR520 PRO521 CYS522 SER523 SER524 SER525 GLY526 ARG527 ARG528 ASP529 HIS530 SER531 LEU532 GLU533 ARG534 LEU535 THR536 ARG537 LEU538 PHE539 PRO545 ALA546 THR547 VAL548 PRO549 ALA550 ALA551 LEU552 SER553 ILE554 LEU555 SER556 THR557 MET558 GLN559 PRO560 SER561 THR562 LEU563 GLU564 THR565 PHE566 PRO567 ASP568 LEU569 PHE570 CYS571 LEU572 PRO573 LEU574 GLY575 GLU576 SER577 PHE578 SER579 ALA580 LEU581 THR582 VAL583 SER584 GLU585 HIS586 VAL587 SER588 TYR589 ILE590 VAL591 THR592 ASN593 GLN594 TYR595 LEU596 ILE597 LYS598 GLY599 ILE600 SER601 TYR602 PRO603 VAL604 SER605 THR606 THR607 VAL608 SER612 LEU613 ILE614 ILE615 THR616 GLN617 THR618 ASP619 SER620 GLN621 THR622 LYS623 CYS624 GLU625 LEU626 THR627 ARG628 ASN629 MET630 HIS631 THR632 THR633 HIS634 SER635 ILE636 THR637 VAL638 ALA639 LEU640 ASN641 ILE642 SER643 LEU644 GLU645 ASN646 CYS647 ALA648 PHE649 CYS650 GLN651 SER652 ALA653 LEU654 LEU655 GLU656 TYR657 ASP658 ASP659 THR660 GLN661 GLY662 VAL663 ILE664 ASN665 ILE666 MET667 TYR668 MET669 HIS670 ASP671 SER672 ASP673 ASP674 VAL675 LEU676 PHE677 ALA678 LEU679 ASP680 PRO681 TYR682 ASN683 GLU684 VAL685 VAL686 VAL687 SER688 SER689 PRO690 ARG691 THR692 HIS693 TYR694 LEU695 MET696 LEU697 LEU698 LYS699 ASN700 GLY701 THR702 VAL703 LEU704 GLU705 VAL706 THR707 ASP708 VAL709 VAL710 VAL711 ASP712
Unit 2 PRO37 THR38 ALA39 ALA40 GLU41 LYS42 VAL43 PRO44 ALA45 GLU46 CYS47 PRO48 GLU49 LEU50 THR51 ARG52 ARG53 CYS54 LEU55 LEU56 GLY57 GLU58 VAL59 PHE60 GLU61 GLY62 ASP63 LYS64 TYR65 GLU66 SER67 TRP68 LEU69 ARG70 PRO71 LEU72 VAL73 ASN74 VAL75 THR76 GLY77 ARG78 ASP79 GLY80 PRO81 LEU82 SER83 GLN84 LEU85 ILE86 ARG87 TYR88 ARG89 PRO90 VAL91 THR92 PRO93 GLU94 ALA95 ALA96 ASN97 SER98 VAL99 LEU100 LEU101 ASP102 GLU103 ALA104 PHE105 LEU106 ASP107 THR108 LEU109 ALA110 LEU111 LEU112 TYR113 ASN114 ASN115 PRO116 ASP117 GLN118 LEU119 ARG120 ALA121 LEU122 LEU123 THR124 LEU125 LEU126 SER127 SER128 ASP129 THR130 ALA131 PRO132 ARG133 TRP134 MET135 THR136 VAL137 MET138 ARG139 GLY140 TYR141 SER142 GLU143 CYS144 GLY145 ASP146 GLY147 SER148 PRO149 ALA150 VAL151 TYR152 THR153 CYS154 VAL155 ASP156 ASP157 LEU158 CYS159 ARG160 GLY161 TYR162 ASP163 LEU164 THR165 ARG166 LEU167 SER168 TYR169 GLY170 ARG171 SER172 ILE173 PHE174 THR175 GLU176 HIS177 VAL178 LEU179 GLY180 PHE181 GLU182 LEU183 VAL184 PRO185 PRO186 SER187 LEU188 PHE189 ASN190 VAL191 VAL192 VAL193 ALA194 ILE195 ARG196 ASN197 GLU198 ALA199 THR200 ARG201 THR202 ASN203 ARG204 ALA205 VAL206 ARG207 LEU208 PRO209 VAL210 SER211 THR212 ALA213 ALA214 ALA215 PRO216 GLU217 GLY218 ILE219 THR220 LEU221 PHE222 TYR223 GLY224 LEU225 TYR226 ASN227 ALA228 VAL229 LYS230 GLU231 PHE232 CYS233 LEU234 ARG235 HIS236 GLN237 LEU238 ASP239 PRO240 PRO241 LEU242 LEU243 ARG244 HIS245 LEU246 ASP247 LYS248 TYR249 TYR250 ALA251 GLY252 LEU253 PRO254 PRO255 GLU256 LEU257 LYS258 GLN259 THR260 ARG261 VAL262 ASN263 LEU264 PRO265 ALA266 HIS267 SER268 ARG269 TYR270 GLY271 PRO272 GLN273
Unit 3 GLU29 CYS30 CYS31 GLU32 PHE33 ILE34 ASN35 VAL36 ASN37 HIS38 PRO39 PRO40 GLU41 ARG42 CYS43 TYR44 ASP45 PHE46 LYS47 MET48 CYS49 ASN50 ARG51 PHE52 THR53 VAL54 ALA55 LEU56 ARG57 CYS58 PRO59 ASP60 GLY61 GLU62 VAL63 CYS64 TYR65 SER66 PRO67 GLU68 LYS69 THR70 ALA71 GLU72 ILE73 ARG74 GLY75 ILE76 VAL77 THR78 THR79 MET80 THR81 HIS82 SER83 LEU84 THR85 ARG86 GLN87 VAL88 VAL89 HIS90 ASN91 LYS92 LEU93 THR94 SER95 CYS96 ASN97 TYR98 ASN99 PRO100 LEU101 TYR102 LEU103 GLU104 ALA105 ASP106 GLY107 ARG108 ILE109 ARG110 CYS111 GLY112 LYS113 VAL114 ASN115 ASP116 LYS117 ALA118 GLN119 TYR120 LEU121 LEU122 GLY123 ALA124 ALA125 GLY126 SER127 VAL128 PRO129 TYR130 ARG131 TRP132 ILE133 ASN134 LEU135 GLU136 TYR137 ASP138 LYS139 ILE140 THR141 ARG142 ILE143 VAL144 GLY145 LEU146 ASP147 GLN148 TYR149 LEU150 GLU151 SER152 VAL153 LYS154 LYS155 HIS156 LYS157 ARG158 LEU159 ASP160 VAL161 CYS162 ARG163
Unit 4 THR45 TYR46 SER47 LYS48 PRO49 HIS50 ASP51 ALA52 ALA53 THR54 PHE55 TYR56 CYS57 PRO58 PHE59 LEU60 TYR61 PRO62 SER63 PRO64 PRO65 ARG66 SER67 PRO68 LEU69 GLN70 PHE71 SER72 GLY73 PHE74 GLN75 ARG76 VAL77 SER78 THR79 GLY80 PRO81 GLU82 CYS83 ARG84 ASN85 GLU86 THR87 LEU88 TYR89 LEU90 LEU91 TYR92 ASN93 ARG94 GLU95 GLY96 GLN97 THR98 LEU99 VAL100 GLU101 ARG102 SER103 SER104 THR105 TRP106 VAL107 LYS108 LYS109 VAL110 ILE111 TRP112 TYR113 LEU114 SER115 GLY116 ARG117 ASN118 GLN119 THR120 ILE121 LEU122 GLN123 ARG124 MET125 PRO126 ARG127 THR128 ALA129 SER130 LYS131 PRO132 SER133 ASP134 GLY135 ASN136 VAL137 GLN138 ILE139 SER140 VAL141 GLU142 ASP143 ALA144 LYS145 ILE146 PHE147 GLY148 ALA149 HIS150 MET151 VAL152 PRO153 LYS154 GLN155 THR156 LYS157 LEU158 LEU159 ARG160 PHE161 VAL162 VAL163 ASN164 ASP165 GLY166 THR167 ARG168 TYR169 GLN170 MET171 CYS172 VAL173 MET174 LYS175 LEU176 GLU177 SER178 TRP179 ALA180 HIS181 VAL182 PHE183 ARG184 ASP185 TYR186 SER187 VAL188 SER189 PHE190 GLN191 VAL192 ARG193 LEU194 THR195 PHE196 THR197 GLU198 ALA199 ASN200 ASN201 GLN202 THR203 TYR204 THR205 PHE206 CYS207 THR208 HIS209 PRO210 ASN211 LEU212 ILE213 VAL214
Unit 5 GLN19 CYS20 GLN21 ARG22 GLU23 THR24 ALA25 GLU26 LYS27 ASN28 ASP29 TYR30 TYR31 ARG32 VAL33 PRO34 HIS35 TYR36 TRP37 ASP38 ALA39 CYS40 SER41 ARG42 ALA43 LEU44 PRO45 ASP46 GLN47 THR48 ARG49 TYR50 LYS51 TYR52 VAL53 GLU54 GLN55 LEU56 VAL57 ASP58 LEU59 THR60 LEU61 ASN62 TYR63 HIS64 TYR65 ASP66 ALA67 SER68 HIS69 GLY70 LEU71 ASP72 ASN73 PHE74 ASP75 VAL76 LEU77 LYS78 ARG79 ILE80 ASN81 VAL82 THR83 GLU84 VAL85 SER86 LEU87 LEU88 ILE89 SER90 ASP91 PHE92 ARG93 ARG94 GLN95 ASN96 ARG97 ARG98 GLY99 GLY100 ARG104 THR105 THR106 PHE107 ASN108 ALA109 ALA110 GLY111 SER112 LEU113 ALA114 PRO115 HIS116 ALA117 ARG118 SER119 LEU120 GLU121 PHE122 SER123 VAL124 ARG125 LEU126 PHE127 ALA128 ASN129
Unit 6 LEU1 VAL2 GLU3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 VAL11 VAL12 GLN13 PRO14 GLY15 ARG16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 SER31 ASP32 GLY33 MET34 HIS35 TRP36 VAL37 ARG38 GLN39 SER40 PRO41 GLY42 ARG43 GLY44 LEU45 GLU46 TRP47 VAL48 ALA49 PHE50 ILE51 SER52 SER53 ASP54 GLY55 SER56 THR57 PRO58 TYR59 TYR60 ALA61 ASP62 SER63 VAL64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 ARG72 ASP73 ASN74 SER75 LYS76 ASN77 THR78 LEU79 TYR80 LEU81 GLN82 MET83 ASN84 SER85 LEU86 ARG87 ALA88 GLU89 ASP90 THR91 ALA92 MET93 TYR94 PHE95 CYS96 ALA97 LYS98 ASP99 TRP100 ALA101 LEU102 PHE103 ARG104 TRP105 LEU106 ARG107 THR108 PHE109 ASP110 HIS111 TRP112 GLY113 GLN114 GLY115 THR116 LEU117 VAL118 THR119 VAL120 SER121 SER122 ALA123 SER124 THR125 LYS126 GLY127 PRO128 SER129 VAL130 PHE131 PRO132 LEU133 ALA134 PRO135 GLY148 CYS149 LEU150 VAL151 LYS152 ASP153 TYR154 PHE155 PRO156 GLU157 PRO158 VAL159 THR160 VAL161 SER162 TRP163 ASN164 SER165 GLY166 ALA167 LEU168 THR169 SER170 GLY171 VAL172 HIS173 THR174 PHE175 PRO176 ALA177 VAL178 LEU179 GLN180 SER181 SER182 GLY183 LEU184 TYR185 SER186 LEU187 SER188 SER189 VAL190 VAL191 THR192 GLN201 THR202 TYR203 ILE204 CYS205 ASN206 VAL207 ASN208 HIS209 LYS210 PRO211 SER212 ASN213 THR214 LYS215 VAL216 ASP217 LYS218 ARG219 VAL220
Unit 7 GLU1 THR2 VAL3 MET4 THR5 GLN6 SER7 PRO8 ALA9 THR10 LEU11 SER12 VAL13 SER14 PRO15 GLY16 GLY17 ARG18 ALA19 THR20 LEU21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 SER28 VAL29 GLY30 ILE31 ASN32 LEU33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 ALA43 PRO44 ARG45 LEU46 LEU47 ILE48 TYR49 GLY50 ALA51 SER52 THR53 ARG54 ALA55 SER56 GLY57 PHE58 PRO59 ALA60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 THR74 ILE75 THR76 SER77 LEU78 GLN79 SER80 GLU81 ASP82 PHE83 ALA84 VAL85 TYR86 TYR87 CYS88 GLN89 GLN90 TYR91 ASN92 ASP93 TRP94 PRO95 PRO96 TRP97 THR98 PHE99 GLY100 GLN101 GLY102 THR103 LYS104 VAL105 GLU106 ILE107 LYS108 ARG109 THR110 VAL111 ALA112 ALA113 PRO114 SER115 VAL116 PHE117 ILE118 PHE119 PRO120 PRO121 SER122 ASP123 GLU124 SER132 VAL133 VAL134 CYS135 LEU136 LEU137 ASN138 ASN139 PHE140 TYR141 PRO142 ARG143 GLU144 ALA145 LYS146 VAL147 GLN148 TRP149 LEU155 GLN156 SER157 GLY158 ASN159 SER160 GLN161 GLU162 SER163 VAL164 THR165 GLU166 GLN167 ASP168 SER169 LYS170 ASP171 SER172 THR173 TYR174 SER175 LEU176 SER177 SER178 THR179 LEU180 THR181 LYS189 HIS190 LYS191 VAL192 TYR193 ALA194 CYS195 GLU196 VAL197 THR198 HIS199 GLN200 GLY201 LEU202 SER203 SER204 PRO205 VAL206 THR207 LYS208 SER209 PHE210 ASN211 ARG212 GLY213

Ligands
Unit 8 NAG1 NAG2 BMA3
Unit 9 NAG801 NAG802 NAG803
Unit 10 NAG301 NAG302

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany