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Sequence, Chains, Asymmetric and Biological Units

Title GUANIDINE-II RIBOSWITCH P2 HAIRPIN DIMER WITH 5-BROMOU SUBST FROM PSEUDOMONAS AERUGINOSA
Keywords GUANIDINE, RIBOSWITCH, KISSING LOOP, HAIRPIN, RNA
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5VJB     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 16 322 21
2  RNA    B 16 322 21
3  RNA    C 16 322 21
4  RNA    D 16 322 21
5  Ligand   RNA (5'-R(*GP*CP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP P*GP*C)-3')  A 2 0 18
6  Ligand   RNA (5'-R(*GP*CP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP P*GP*C)-3')  B 3 0 19
7  Ligand   RNA (5'-R(*GP*CP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP P*GP*C)-3')  C 2 0 18
8  Ligand   RNA (5'-R(*GP*CP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP P*GP*C)-3')  D 2 0 18
9 Water     10 0 11
total       83 1288 168
Nucleic acids
Unit 1 G1 C2 G3 G4 G5 G6 A7 C8 G9 A10 C11 C12 C13 5BU14 G15 C16
Unit 2 G1 C2 G3 G4 G5 G6 A7 C8 G9 A10 C11 C12 C13 5BU14 G15 C16
Unit 3 G1 C2 G3 G4 G5 G6 A7 C8 G9 A10 C11 C12 C13 5BU14 G15 C16
Unit 4 G1 C2 G3 G4 G5 G6 A7 C8 G9 A10 C11 C12 C13 5BU14 G15 C16
Ligands
Unit 5 GAI101 SPM102
Unit 6 GAI101 SPM102 MG103
Unit 7 GAI101 SPM102
Unit 8 GAI101 SPM102
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany