5VGM - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF DIHYDROOROTASE PYRC FROM VIBRIO CHOLERA COMPLEX WITH ZINC AT 1.95 A RESOLUTION.
• Keywords: STRUCTURAL GENOMICS, PSI-BIOLOGY, CENTER FOR STRUCTURAL GENO INFECTIOUS DISEASES, CSGID, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5VGM	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DIHYDROOROTASE	A	331	2484	26
2	Protein	DIHYDROOROTASE	B	342	2582	26
3	Ligand	DIHYDROOROTASE	A	5	0	14
4	Ligand	DIHYDROOROTASE	B	4	0	7
5	Water			227	0	227
total				909	5066	300

Proteins

Unit 1

ALA 0 MET 1 THR 2 THR 3 LEU 4 THR 5 ILE 6 THR 7 ARG 8 PRO 9 ASP 10 ASP 11 TRP 12 HIS 13 VAL 14 HIS 15 LEU 16 ARG 17 ASP 18 GLY 19 ASP 20 VAL 21 LEU 22 ALA 23 ASP 24 THR 25 VAL 26 ARG 27 ASP 28 ILE 29 SER 30 ARG 31 TYR 32 ASN 33 GLY 34 ARG 35 ALA 36 LEU 37 ILE 38 MET 39 PRO 40 ASN 41 THR 42 VAL 43 PRO 44 PRO 45 VAL 46 THR 47 THR 48 THR 49 GLU 50 MET 51 ALA 52 LEU 53 ALA 54 TYR 55 ARG 56 GLU 57 ARG 58 ILE 59 MET 60 ALA 61 ALA 62 GLN 63 HIS 67 PHE 68 GLU 69 PRO 70 LEU 71 MET 72 ALA 73 LEU 74 TYR 75 LEU 76 THR 77 ASP 78 ASN 79 THR 80 SER 81 PRO 82 GLU 83 GLU 84 ILE 85 ARG 86 LYS 87 ALA 88 LYS 89 ALA 90 SER 91 GLY 92 LYS 93 VAL 94 VAL 95 ALA 96 ALA 97 KCX 98 LEU 99 TYR 100 PRO 101 GLY 111 VAL 112 THR 113 SER 114 ALA 115 LYS 116 ASN 117 ILE 118 TYR 119 PRO 120 VAL 121 LEU 122 GLN 123 ALA 124 MET 125 GLN 126 GLU 127 VAL 128 GLY 129 MET 130 LEU 131 LEU 132 LEU 133 VAL 134 HIS 135 GLY 136 GLU 137 VAL 138 THR 139 THR 140 HIS 141 GLU 142 VAL 143 ASP 144 ILE 145 PHE 146 ASP 147 ARG 148 GLU 149 LYS 150 THR 151 PHE 152 LEU 153 ASP 154 THR 155 VAL 156 LEU 157 ALA 158 PRO 159 ILE 160 VAL 161 ASN 162 ASP 163 PHE 164 PRO 165 GLN 166 LEU 167 LYS 168 ILE 169 VAL 170 LEU 171 GLU 172 HIS 173 ILE 174 THR 175 THR 176 ALA 177 ASP 178 ALA 179 VAL 180 THR 181 PHE 182 VAL 183 GLN 184 GLN 185 ALA 186 GLY 187 ASP 188 ASN 189 VAL 190 ALA 191 ALA 192 THR 193 ILE 194 THR 195 ALA 196 HIS 197 HIS 198 LEU 199 LEU 200 PHE 201 ASN 202 ARG 203 ASN 204 HIS 205 MET 206 LEU 207 VAL 208 GLY 209 GLY 210 ILE 211 ARG 212 PRO 213 HIS 214 PHE 215 TYR 216 CYS 217 LEU 218 PRO 219 ILE 220 LEU 221 LYS 222 ARG 223 ALA 224 THR 225 HIS 226 GLN 227 HIS 228 ALA 229 LEU 230 VAL 231 ALA 232 ALA 233 ALA 234 THR 235 SER 236 GLY 237 SER 238 LYS 239 LYS 240 PHE 241 PHE 242 LEU 243 GLY 244 THR 245 ASP 246 SER 247 ALA 248 PRO 249 HIS 250 ALA 251 LYS 252 GLY 253 ARG 254 LYS 255 GLU 256 ALA 257 ALA 258 CSX 259 GLY 260 CSX 261 ALA 262 GLY 263 SER 264 TYR 265 THR 266 ALA 267 HIS 268 ALA 269 ALA 270 LEU 271 GLU 272 LEU 273 TYR 274 ALA 275 GLU 276 VAL 277 PHE 278 GLU 279 LYS 280 GLU 281 GLY 282 LYS 283 LEU 284 GLU 285 ASN 286 LEU 287 GLU 288 ALA 289 PHE 290 ALA 291 SER 292 PHE 293 ASN 294 GLY 295 PRO 296 ASP 297 PHE 298 TYR 299 GLY 300 LEU 301 PRO 302 ARG 303 ASN 304 GLN 305 GLU 306 THR 307 VAL 308 THR 309 LEU 310 THR 311 LYS 312 GLN 313 ALA 314 TRP 315 PRO 316 VAL 317 ALA 318 GLU 319 SER 320 MET 321 PRO 322 PHE 323 GLY 324 SER 325 ASP 326 ILE 327 VAL 328 VAL 329 PRO 330 ILE 331 ARG 332 ALA 333 GLY 334 GLU 335 ASN 336 ILE 337 GLU 338 TRP 339 THR 340 VAL 341 LYS 342

Unit 2

SER -2 ASN -1 ALA 0 MET 1 THR 2 THR 3 LEU 4 THR 5 ILE 6 THR 7 ARG 8 PRO 9 ASP 10 ASP 11 TRP 12 HIS 13 VAL 14 HIS 15 LEU 16 ARG 17 ASP 18 GLY 19 ASP 20 VAL 21 LEU 22 ALA 23 ASP 24 THR 25 VAL 26 ARG 27 ASP 28 ILE 29 SER 30 ARG 31 TYR 32 ASN 33 GLY 34 ARG 35 ALA 36 LEU 37 ILE 38 MET 39 PRO 40 ASN 41 THR 42 VAL 43 PRO 44 PRO 45 VAL 46 THR 47 THR 48 THR 49 GLU 50 MET 51 ALA 52 LEU 53 ALA 54 TYR 55 ARG 56 GLU 57 ARG 58 ILE 59 MET 60 ALA 61 ALA 62 GLN 63 PRO 64 GLN 65 ALA 66 HIS 67 PHE 68 GLU 69 PRO 70 LEU 71 MET 72 ALA 73 LEU 74 TYR 75 LEU 76 THR 77 ASP 78 ASN 79 THR 80 SER 81 PRO 82 GLU 83 GLU 84 ILE 85 ARG 86 LYS 87 ALA 88 LYS 89 ALA 90 SER 91 GLY 92 LYS 93 VAL 94 VAL 95 ALA 96 ALA 97 KCX 98 LEU 99 TYR 100 PRO 101 ALA 102 GLY 103 ASN 107 SER 108 ASP 109 SER 110 GLY 111 VAL 112 THR 113 SER 114 ALA 115 LYS 116 ASN 117 ILE 118 TYR 119 PRO 120 VAL 121 LEU 122 GLN 123 ALA 124 MET 125 GLN 126 GLU 127 VAL 128 GLY 129 MET 130 LEU 131 LEU 132 LEU 133 VAL 134 HIS 135 GLY 136 GLU 137 VAL 138 THR 139 THR 140 HIS 141 GLU 142 VAL 143 ASP 144 ILE 145 PHE 146 ASP 147 ARG 148 GLU 149 LYS 150 THR 151 PHE 152 LEU 153 ASP 154 THR 155 VAL 156 LEU 157 ALA 158 PRO 159 ILE 160 VAL 161 ASN 162 ASP 163 PHE 164 PRO 165 GLN 166 LEU 167 LYS 168 ILE 169 VAL 170 LEU 171 GLU 172 HIS 173 ILE 174 THR 175 THR 176 ALA 177 ASP 178 ALA 179 VAL 180 THR 181 PHE 182 VAL 183 GLN 184 GLN 185 ALA 186 GLY 187 ASP 188 ASN 189 VAL 190 ALA 191 ALA 192 THR 193 ILE 194 THR 195 ALA 196 HIS 197 HIS 198 LEU 199 LEU 200 PHE 201 ASN 202 ARG 203 ASN 204 HIS 205 MET 206 LEU 207 VAL 208 GLY 209 GLY 210 ILE 211 ARG 212 PRO 213 HIS 214 PHE 215 TYR 216 CYS 217 LEU 218 PRO 219 ILE 220 LEU 221 LYS 222 ARG 223 ALA 224 THR 225 HIS 226 GLN 227 HIS 228 ALA 229 LEU 230 VAL 231 ALA 232 ALA 233 ALA 234 THR 235 SER 236 GLY 237 SER 238 LYS 239 LYS 240 PHE 241 PHE 242 LEU 243 GLY 244 THR 245 ASP 246 SER 247 ALA 248 PRO 249 HIS 250 ALA 251 LYS 252 GLY 253 ARG 254 LYS 255 GLU 256 ALA 257 ALA 258 CSX 259 GLY 260 CSX 261 ALA 262 GLY 263 SER 264 TYR 265 THR 266 ALA 267 HIS 268 ALA 269 ALA 270 LEU 271 GLU 272 LEU 273 TYR 274 ALA 275 GLU 276 VAL 277 PHE 278 GLU 279 LYS 280 GLU 281 GLY 282 LYS 283 LEU 284 GLU 285 ASN 286 LEU 287 GLU 288 ALA 289 PHE 290 ALA 291 SER 292 PHE 293 ASN 294 GLY 295 PRO 296 ASP 297 PHE 298 TYR 299 GLY 300 LEU 301 PRO 302 ARG 303 ASN 304 GLN 305 GLU 306 THR 307 VAL 308 THR 309 LEU 310 THR 311 LYS 312 GLN 313 ALA 314 TRP 315 PRO 316 VAL 317 ALA 318 GLU 319 SER 320 MET 321 PRO 322 PHE 323 GLY 324 SER 325 ASP 326 ILE 327 VAL 328 VAL 329 PRO 330 ILE 331 ARG 332 ALA 333 GLY 334 GLU 335 ASN 336 ILE 337 GLU 338 TRP 339 THR 340 VAL 341 LYS 342

Ligands

Unit 3	ZN 401 ZN 402 ACT 403 ACT 404 ACT 405
Unit 4	ZN 401 ZN 402 ACT 403 CL 404