5VCO - Sequence, Chains, Asymmetric and Biological Units

• Title: THE CRYSTAL STRUCTURE OF DER P 1 ALLERGEN COMPLEXED WITH FAB OF MAB 10B9
• Keywords: ALLERGEN, ANTIBODY, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5VCO	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	LIGHT CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY	A	211	1586	0
2	Protein	HEAVY CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY	B	215	1587	0
3	Protein	LIGHT CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY	C	211	1612	0
4	Protein	HEAVY CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY	D	219	1634	0
5	Protein	PEPTIDASE 1	E	222	1740	0
6	Protein	PEPTIDASE 1	F	222	1707	0
7	Ligand	PEPTIDASE 1	E	2	0	15
8	Ligand	PEPTIDASE 1	F	2	0	15
9	Water			20	0	22
total				1324	9866	52

Proteins

Unit 1	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 THR 7 THR 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 LEU 15 GLY 16 ASP 17 GLY 18 ILE 19 THR 20 ILE 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 ILE 29 SER 30 ASN 31 TYR 32 LEU 33 ASN 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 ASP 41 GLY 42 THR 43 VAL 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 TYR 50 THR 51 SER 52 ARG 53 LEU 54 HIS 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 TYR 71 SER 72 LEU 73 THR 74 ILE 75 SER 76 ASN 77 LEU 78 GLU 79 GLN 80 GLU 81 ASP 82 ILE 83 ALA 84 THR 85 TYR 86 PHE 87 CYS 88 GLN 89 GLN 90 GLY 91 ASN 92 THR 93 LEU 94 PRO 95 TYR 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 ILE 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211
Unit 2	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 PRO 9 SER 10 LEU 11 VAL 12 LYS 13 PRO 14 SER 15 GLN 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 SER 23 VAL 24 THR 25 GLY 26 ASP 27 SER 28 ILE 29 THR 30 SER 31 GLY 32 PHE 33 TRP 34 ASN 35 TRP 36 ILE 37 ARG 38 LYS 39 PHE 40 PRO 41 GLY 42 ASN 43 LYS 44 LEU 45 GLU 46 PHE 47 MET 48 GLY 49 TYR 50 ILE 51 THR 52 TYR 53 SER 54 GLY 55 THR 56 SER 57 TYR 58 TYR 59 LYS 60 PRO 61 SER 62 LEU 63 LYS 64 SER 65 ARG 66 ILE 67 SER 68 ILE 69 THR 70 ARG 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 GLN 77 TYR 78 PHE 79 LEU 80 GLN 81 LEU 82 ASN 83 SER 84 VAL 85 THR 86 ALA 87 GLU 88 ASP 89 THR 90 ALA 91 THR 92 TYR 93 TYR 94 CYS 95 ALA 96 ARG 97 ARG 98 GLY 99 PHE 100 LEU 101 THR 102 THR 103 VAL 104 ASN 105 TYR 106 TYR 107 ALA 108 MET 109 ASP 110 TYR 111 TRP 112 GLY 113 GLN 114 GLY 115 THR 116 SER 117 VAL 118 THR 119 VAL 120 SER 121 SER 122 ALA 123 LYS 124 THR 125 THR 126 PRO 127 PRO 128 SER 129 VAL 130 TYR 131 PRO 132 LEU 133 ALA 134 PRO 135 SER 143 MET 144 VAL 145 THR 146 LEU 147 GLY 148 CYS 149 LEU 150 VAL 151 LYS 152 GLY 153 TYR 154 PHE 155 PRO 156 GLU 157 PRO 158 VAL 159 THR 160 VAL 161 THR 162 TRP 163 ASN 164 SER 165 GLY 166 SER 167 LEU 168 SER 169 SER 170 GLY 171 VAL 172 HIS 173 THR 174 PHE 175 PRO 176 ALA 177 VAL 178 LEU 179 GLN 180 SER 181 ASP 182 LEU 183 TYR 184 THR 185 LEU 186 SER 187 SER 188 SER 189 VAL 190 THR 191 VAL 192 PRO 193 SER 194 SER 195 THR 196 TRP 197 PRO 198 SER 199 GLU 200 THR 201 VAL 202 THR 203 CYS 204 ASN 205 VAL 206 ALA 207 HIS 208 PRO 209 ALA 210 SER 211 SER 212 THR 213 LYS 214 VAL 215 ASP 216 LYS 217 LYS 218 ILE 219 VAL 220 PRO 221 ARG 222
Unit 3	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 THR 7 THR 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 LEU 15 GLY 16 ASP 17 GLY 18 ILE 19 THR 20 ILE 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 ILE 29 SER 30 ASN 31 TYR 32 LEU 33 ASN 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 ASP 41 GLY 42 THR 43 VAL 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 TYR 50 THR 51 SER 52 ARG 53 LEU 54 HIS 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 TYR 71 SER 72 LEU 73 THR 74 ILE 75 SER 76 ASN 77 LEU 78 GLU 79 GLN 80 GLU 81 ASP 82 ILE 83 ALA 84 THR 85 TYR 86 PHE 87 CYS 88 GLN 89 GLN 90 GLY 91 ASN 92 THR 93 LEU 94 PRO 95 TYR 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 ILE 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211
Unit 4	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 PRO 9 SER 10 LEU 11 VAL 12 LYS 13 PRO 14 SER 15 GLN 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 SER 23 VAL 24 THR 25 GLY 26 ASP 27 SER 28 ILE 29 THR 30 SER 31 GLY 32 PHE 33 TRP 34 ASN 35 TRP 36 ILE 37 ARG 38 LYS 39 PHE 40 PRO 41 GLY 42 ASN 43 LYS 44 LEU 45 GLU 46 PHE 47 MET 48 GLY 49 TYR 50 ILE 51 THR 52 TYR 53 SER 54 GLY 55 THR 56 SER 57 TYR 58 TYR 59 LYS 60 PRO 61 SER 62 LEU 63 LYS 64 SER 65 ARG 66 ILE 67 SER 68 ILE 69 THR 70 ARG 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 GLN 77 TYR 78 PHE 79 LEU 80 GLN 81 LEU 82 ASN 83 SER 84 VAL 85 THR 86 ALA 87 GLU 88 ASP 89 THR 90 ALA 91 THR 92 TYR 93 TYR 94 CYS 95 ALA 96 ARG 97 ARG 98 GLY 99 PHE 100 LEU 101 THR 102 THR 103 VAL 104 ASN 105 TYR 106 TYR 107 ALA 108 MET 109 ASP 110 TYR 111 TRP 112 GLY 113 GLN 114 GLY 115 THR 116 SER 117 VAL 118 THR 119 VAL 120 SER 121 SER 122 ALA 123 LYS 124 THR 125 THR 126 PRO 127 PRO 128 SER 129 VAL 130 TYR 131 PRO 132 LEU 133 ALA 134 PRO 135 GLY 136 SER 137 ALA 138 ASN 142 SER 143 MET 144 VAL 145 THR 146 LEU 147 GLY 148 CYS 149 LEU 150 VAL 151 LYS 152 GLY 153 TYR 154 PHE 155 PRO 156 GLU 157 PRO 158 VAL 159 THR 160 VAL 161 THR 162 TRP 163 ASN 164 SER 165 GLY 166 SER 167 LEU 168 SER 169 SER 170 GLY 171 VAL 172 HIS 173 THR 174 PHE 175 PRO 176 ALA 177 VAL 178 LEU 179 GLN 180 SER 181 ASP 182 LEU 183 TYR 184 THR 185 LEU 186 SER 187 SER 188 SER 189 VAL 190 THR 191 VAL 192 PRO 193 SER 194 SER 195 THR 196 TRP 197 PRO 198 SER 199 GLU 200 THR 201 VAL 202 THR 203 CYS 204 ASN 205 VAL 206 ALA 207 HIS 208 PRO 209 ALA 210 SER 211 SER 212 THR 213 LYS 214 VAL 215 ASP 216 LYS 217 LYS 218 ILE 219 VAL 220 PRO 221 ARG 222
Unit 5	THR 1 ASN 2 ALA 3 CYS 4 SER 5 ILE 6 ASN 7 GLY 8 ASN 9 ALA 10 PRO 11 ALA 12 GLU 13 ILE 14 ASP 15 LEU 16 ARG 17 GLN 18 MET 19 ARG 20 THR 21 VAL 22 THR 23 PRO 24 ILE 25 ARG 26 MET 27 GLN 28 GLY 29 GLY 30 CYS 31 GLY 32 SER 33 CYS 34 TRP 35 ALA 36 PHE 37 SER 38 GLY 39 VAL 40 ALA 41 ALA 42 THR 43 GLU 44 SER 45 ALA 46 TYR 47 LEU 48 ALA 49 TYR 50 ARG 51 ASN 52 GLN 53 SER 54 LEU 55 ASP 56 LEU 57 ALA 58 GLU 59 GLN 60 GLU 61 LEU 62 VAL 63 ASP 64 CYS 65 ALA 66 SER 67 GLN 68 HIS 69 GLY 70 CYS 71 HIS 72 GLY 73 ASP 74 THR 75 ILE 76 PRO 77 ARG 78 GLY 79 ILE 80 GLU 81 TYR 82 ILE 83 GLN 84 HIS 85 ASN 86 GLY 87 VAL 88 VAL 89 GLN 90 GLU 91 SER 92 TYR 93 TYR 94 ARG 95 TYR 96 VAL 97 ALA 98 ARG 99 GLU 100 GLN 101 SER 102 CYS 103 ARG 104 ARG 105 PRO 106 ASN 107 ALA 108 GLN 109 ARG 110 PHE 111 GLY 112 ILE 113 SER 114 ASN 115 TYR 116 CYS 117 GLN 118 ILE 119 TYR 120 PRO 121 PRO 122 ASN 123 ALA 124 ASN 125 LYS 126 ILE 127 ARG 128 GLU 129 ALA 130 LEU 131 ALA 132 GLN 133 THR 134 HIS 135 SER 136 ALA 137 ILE 138 ALA 139 VAL 140 ILE 141 ILE 142 GLY 143 ILE 144 LYS 145 ASP 146 LEU 147 ASP 148 ALA 149 PHE 150 ARG 151 HIS 152 TYR 153 ASP 154 GLY 155 ARG 156 THR 157 ILE 158 ILE 159 GLN 160 ARG 161 ASP 162 ASN 163 GLY 164 TYR 165 GLN 166 PRO 167 ASN 168 TYR 169 HIS 170 ALA 171 VAL 172 ASN 173 ILE 174 VAL 175 GLY 176 TYR 177 SER 178 ASN 179 ALA 180 GLN 181 GLY 182 VAL 183 ASP 184 TYR 185 TRP 186 ILE 187 VAL 188 ARG 189 ASN 190 SER 191 TRP 192 ASP 193 THR 194 ASN 195 TRP 196 GLY 197 ASP 198 ASN 199 GLY 200 TYR 201 GLY 202 TYR 203 PHE 204 ALA 205 ALA 206 ASN 207 ILE 208 ASP 209 LEU 210 MET 211 MET 212 ILE 213 GLU 214 GLU 215 TYR 216 PRO 217 TYR 218 VAL 219 VAL 220 ILE 221 LEU 222
Unit 6	THR 1 ASN 2 ALA 3 CYS 4 SER 5 ILE 6 ASN 7 GLY 8 ASN 9 ALA 10 PRO 11 ALA 12 GLU 13 ILE 14 ASP 15 LEU 16 ARG 17 GLN 18 MET 19 ARG 20 THR 21 VAL 22 THR 23 PRO 24 ILE 25 ARG 26 MET 27 GLN 28 GLY 29 GLY 30 CYS 31 GLY 32 SER 33 CYS 34 TRP 35 ALA 36 PHE 37 SER 38 GLY 39 VAL 40 ALA 41 ALA 42 THR 43 GLU 44 SER 45 ALA 46 TYR 47 LEU 48 ALA 49 TYR 50 ARG 51 ASN 52 GLN 53 SER 54 LEU 55 ASP 56 LEU 57 ALA 58 GLU 59 GLN 60 GLU 61 LEU 62 VAL 63 ASP 64 CYS 65 ALA 66 SER 67 GLN 68 HIS 69 GLY 70 CYS 71 HIS 72 GLY 73 ASP 74 THR 75 ILE 76 PRO 77 ARG 78 GLY 79 ILE 80 GLU 81 TYR 82 ILE 83 GLN 84 HIS 85 ASN 86 GLY 87 VAL 88 VAL 89 GLN 90 GLU 91 SER 92 TYR 93 TYR 94 ARG 95 TYR 96 VAL 97 ALA 98 ARG 99 GLU 100 GLN 101 SER 102 CYS 103 ARG 104 ARG 105 PRO 106 ASN 107 ALA 108 GLN 109 ARG 110 PHE 111 GLY 112 ILE 113 SER 114 ASN 115 TYR 116 CYS 117 GLN 118 ILE 119 TYR 120 PRO 121 PRO 122 ASN 123 ALA 124 ASN 125 LYS 126 ILE 127 ARG 128 GLU 129 ALA 130 LEU 131 ALA 132 GLN 133 THR 134 HIS 135 SER 136 ALA 137 ILE 138 ALA 139 VAL 140 ILE 141 ILE 142 GLY 143 ILE 144 LYS 145 ASP 146 LEU 147 ASP 148 ALA 149 PHE 150 ARG 151 HIS 152 TYR 153 ASP 154 GLY 155 ARG 156 THR 157 ILE 158 ILE 159 GLN 160 ARG 161 ASP 162 ASN 163 GLY 164 TYR 165 GLN 166 PRO 167 ASN 168 TYR 169 HIS 170 ALA 171 VAL 172 ASN 173 ILE 174 VAL 175 GLY 176 TYR 177 SER 178 ASN 179 ALA 180 GLN 181 GLY 182 VAL 183 ASP 184 TYR 185 TRP 186 ILE 187 VAL 188 ARG 189 ASN 190 SER 191 TRP 192 ASP 193 THR 194 ASN 195 TRP 196 GLY 197 ASP 198 ASN 199 GLY 200 TYR 201 GLY 202 TYR 203 PHE 204 ALA 205 ALA 206 ASN 207 ILE 208 ASP 209 LEU 210 MET 211 MET 212 ILE 213 GLU 214 GLU 215 TYR 216 PRO 217 TYR 218 VAL 219 VAL 220 ILE 221 LEU 222

Ligands

Unit 7	NAG 301 CA 302
Unit 8	NAG 301 CA 302