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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF DER P 1 ALLERGEN COMPLEXED WITH FAB OF MAB 5H8
Keywords ALLERGEN, ANTIBODY, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5VCN     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PEPTIDASE 1LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8  A 222 1716 0
2  Protein   PEPTIDASE 1LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8  B 222 1695 0
3  Protein   PEPTIDASE 1LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8  C 210 1573 0
4  Protein   HEAVY CHAIN OF FAB FRAGMENT OF MAB 5H8  D 213 1584 0
5  Protein   PEPTIDASE 1LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8  E 210 1580 0
6  Protein   HEAVY CHAIN OF FAB FRAGMENT OF MAB 5H8  F 214 1600 0
7  Ligand   PEPTIDASE 1LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8  A 4 0 24
8  Ligand   PEPTIDASE 1LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8  B 4 0 24
9 Water     74 0 74
total       1373 9748 122
Proteins
Unit 1 THR1 ASN2 ALA3 CYS4 SER5 ILE6 ASN7 GLY8 ASN9 ALA10 PRO11 ALA12 GLU13 ILE14 ASP15 LEU16 ARG17 GLN18 MET19 ARG20 THR21 VAL22 THR23 PRO24 ILE25 ARG26 MET27 GLN28 GLY29 GLY30 CYS31 GLY32 SER33 CYS34 TRP35 ALA36 PHE37 SER38 GLY39 VAL40 ALA41 ALA42 THR43 GLU44 SER45 ALA46 TYR47 LEU48 ALA49 TYR50 ARG51 ASN52 GLN53 SER54 LEU55 ASP56 LEU57 ALA58 GLU59 GLN60 GLU61 LEU62 VAL63 ASP64 CYS65 ALA66 SER67 GLN68 HIS69 GLY70 CYS71 HIS72 GLY73 ASP74 THR75 ILE76 PRO77 ARG78 GLY79 ILE80 GLU81 TYR82 ILE83 GLN84 HIS85 ASN86 GLY87 VAL88 VAL89 GLN90 GLU91 SER92 TYR93 TYR94 ARG95 TYR96 VAL97 ALA98 ARG99 GLU100 GLN101 SER102 CYS103 ARG104 ARG105 PRO106 ASN107 ALA108 GLN109 ARG110 PHE111 GLY112 ILE113 SER114 ASN115 TYR116 CYS117 GLN118 ILE119 TYR120 PRO121 PRO122 ASN123 ALA124 ASN125 LYS126 ILE127 ARG128 GLU129 ALA130 LEU131 ALA132 GLN133 THR134 HIS135 SER136 ALA137 ILE138 ALA139 VAL140 ILE141 ILE142 GLY143 ILE144 LYS145 ASP146 LEU147 ASP148 ALA149 PHE150 ARG151 HIS152 TYR153 ASP154 GLY155 ARG156 THR157 ILE158 ILE159 GLN160 ARG161 ASP162 ASN163 GLY164 TYR165 GLN166 PRO167 ASN168 TYR169 HIS170 ALA171 VAL172 ASN173 ILE174 VAL175 GLY176 TYR177 SER178 ASN179 ALA180 GLN181 GLY182 VAL183 ASP184 TYR185 TRP186 ILE187 VAL188 ARG189 ASN190 SER191 TRP192 ASP193 THR194 ASN195 TRP196 GLY197 ASP198 ASN199 GLY200 TYR201 GLY202 TYR203 PHE204 ALA205 ALA206 ASN207 ILE208 ASP209 LEU210 MET211 MET212 ILE213 GLU214 GLU215 TYR216 PRO217 TYR218 VAL219 VAL220 ILE221 LEU222
Unit 2 THR1 ASN2 ALA3 CYS4 SER5 ILE6 ASN7 GLY8 ASN9 ALA10 PRO11 ALA12 GLU13 ILE14 ASP15 LEU16 ARG17 GLN18 MET19 ARG20 THR21 VAL22 THR23 PRO24 ILE25 ARG26 MET27 GLN28 GLY29 GLY30 CYS31 GLY32 SER33 CYS34 TRP35 ALA36 PHE37 SER38 GLY39 VAL40 ALA41 ALA42 THR43 GLU44 SER45 ALA46 TYR47 LEU48 ALA49 TYR50 ARG51 ASN52 GLN53 SER54 LEU55 ASP56 LEU57 ALA58 GLU59 GLN60 GLU61 LEU62 VAL63 ASP64 CYS65 ALA66 SER67 GLN68 HIS69 GLY70 CYS71 HIS72 GLY73 ASP74 THR75 ILE76 PRO77 ARG78 GLY79 ILE80 GLU81 TYR82 ILE83 GLN84 HIS85 ASN86 GLY87 VAL88 VAL89 GLN90 GLU91 SER92 TYR93 TYR94 ARG95 TYR96 VAL97 ALA98 ARG99 GLU100 GLN101 SER102 CYS103 ARG104 ARG105 PRO106 ASN107 ALA108 GLN109 ARG110 PHE111 GLY112 ILE113 SER114 ASN115 TYR116 CYS117 GLN118 ILE119 TYR120 PRO121 PRO122 ASN123 ALA124 ASN125 LYS126 ILE127 ARG128 GLU129 ALA130 LEU131 ALA132 GLN133 THR134 HIS135 SER136 ALA137 ILE138 ALA139 VAL140 ILE141 ILE142 GLY143 ILE144 LYS145 ASP146 LEU147 ASP148 ALA149 PHE150 ARG151 HIS152 TYR153 ASP154 GLY155 ARG156 THR157 ILE158 ILE159 GLN160 ARG161 ASP162 ASN163 GLY164 TYR165 GLN166 PRO167 ASN168 TYR169 HIS170 ALA171 VAL172 ASN173 ILE174 VAL175 GLY176 TYR177 SER178 ASN179 ALA180 GLN181 GLY182 VAL183 ASP184 TYR185 TRP186 ILE187 VAL188 ARG189 ASN190 SER191 TRP192 ASP193 THR194 ASN195 TRP196 GLY197 ASP198 ASN199 GLY200 TYR201 GLY202 TYR203 PHE204 ALA205 ALA206 ASN207 ILE208 ASP209 LEU210 MET211 MET212 ILE213 GLU214 GLU215 TYR216 PRO217 TYR218 VAL219 VAL220 ILE221 LEU222
Unit 3 ASP1 ILE2 GLN3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 THR30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 LYS45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 GLN80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 GLN90 GLY91 LYS92 THR93 LEU94 PRO95 THR96 PHE97 GLY98 GLY99 GLY100 THR101 LYS102 LEU103 GLU104 ILE105 LYS106 ARG107 ALA108 ASP109 ALA110 ALA111 PRO112 THR113 VAL114 SER115 ILE116 PHE117 PRO118 PRO119 SER120 SER121 GLU122 GLN123 LEU124 THR125 SER126 GLY127 GLY128 ALA129 SER130 VAL131 VAL132 CYS133 PHE134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 LYS141 ASP142 ILE143 ASN144 VAL145 LYS146 TRP147 LYS148 ILE149 ASP150 GLY151 SER152 GLU153 ARG154 GLN155 ASN156 GLY157 VAL158 LEU159 ASN160 SER161 TRP162 THR163 ASP164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 MET174 SER175 SER176 THR177 LEU178 THR179 LEU180 THR181 LYS182 ASP183 GLU184 TYR185 GLU186 ARG187 HIS188 ASN189 SER190 TYR191 THR192 CYS193 GLU194 ALA195 THR196 HIS197 LYS198 THR199 SER200 THR201 SER202 PRO203 ILE204 VAL205 LYS206 SER207 PHE208 ASN209 ARG210
Unit 4 GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 ALA13 PRO14 SER15 GLN16 SER17 LEU18 SER19 ILE20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 THR30 GLY31 TYR32 GLY33 VAL34 ASN35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 MET50 ILE51 TRP52 GLY53 ASP54 GLY55 ARG56 ILE57 ASP58 TYR59 ASN60 LEU61 VAL62 ARG63 LYS64 SER65 ARG66 LEU67 SER68 ILE69 SER70 LYS71 ASP72 ASN73 SER74 GLN75 SER76 GLN77 ILE78 PHE79 LEU80 LYS81 MET82 ASN83 SER84 LEU85 GLN86 THR87 ASP88 ASP89 THR90 ALA91 ARG92 TYR93 TYR94 CYS95 ALA96 ARG97 ALA98 TYR99 GLN100 ARG101 TYR102 ASP103 TYR104 TYR105 ALA106 MET107 ASP108 TYR109 TRP110 GLY111 GLN112 GLY113 THR114 SER115 VAL116 THR117 VAL118 SER119 SER120 ALA121 LYS122 THR123 THR124 ALA125 PRO126 SER127 VAL128 TYR129 PRO130 LEU131 ALA132 PRO133 VAL134 SER142 VAL143 THR144 LEU145 GLY146 CYS147 LEU148 VAL149 LYS150 GLY151 TYR152 PHE153 PRO154 GLU155 PRO156 VAL157 THR158 LEU159 THR160 TRP161 ASN162 SER163 GLY164 SER165 LEU166 SER167 SER168 GLY169 VAL170 HIS171 THR172 PHE173 PRO174 ALA175 VAL176 LEU177 GLN178 SER179 ASP180 LEU181 TYR182 THR183 LEU184 SER185 SER186 SER187 VAL188 THR189 VAL190 THR191 SER192 SER193 THR194 TRP195 PRO196 SER197 GLN198 SER199 ILE200 THR201 CYS202 ASN203 VAL204 ALA205 HIS206 PRO207 ALA208 SER209 SER210 THR211 LYS212 VAL213 ASP214 LYS215 LYS216 ILE217 GLU218 PRO219 ARG220
Unit 5 ASP1 ILE2 GLN3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 THR30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 LYS45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 GLN80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 GLN90 GLY91 LYS92 THR93 LEU94 PRO95 THR96 PHE97 GLY98 GLY99 GLY100 THR101 LYS102 LEU103 GLU104 ILE105 LYS106 ARG107 ALA108 ASP109 ALA110 ALA111 PRO112 THR113 VAL114 SER115 ILE116 PHE117 PRO118 PRO119 SER120 SER121 GLU122 GLN123 LEU124 THR125 SER126 GLY127 GLY128 ALA129 SER130 VAL131 VAL132 CYS133 PHE134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 LYS141 ASP142 ILE143 ASN144 VAL145 LYS146 TRP147 LYS148 ILE149 ASP150 GLY151 SER152 GLU153 ARG154 GLN155 ASN156 GLY157 VAL158 LEU159 ASN160 SER161 TRP162 THR163 ASP164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 MET174 SER175 SER176 THR177 LEU178 THR179 LEU180 THR181 LYS182 ASP183 GLU184 TYR185 GLU186 ARG187 HIS188 ASN189 SER190 TYR191 THR192 CYS193 GLU194 ALA195 THR196 HIS197 LYS198 THR199 SER200 THR201 SER202 PRO203 ILE204 VAL205 LYS206 SER207 PHE208 ASN209 ARG210
Unit 6 GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 ALA13 PRO14 SER15 GLN16 SER17 LEU18 SER19 ILE20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 THR30 GLY31 TYR32 GLY33 VAL34 ASN35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 MET50 ILE51 TRP52 GLY53 ASP54 GLY55 ARG56 ILE57 ASP58 TYR59 ASN60 LEU61 VAL62 ARG63 LYS64 SER65 ARG66 LEU67 SER68 ILE69 SER70 LYS71 ASP72 ASN73 SER74 GLN75 SER76 GLN77 ILE78 PHE79 LEU80 LYS81 MET82 ASN83 SER84 LEU85 GLN86 THR87 ASP88 ASP89 THR90 ALA91 ARG92 TYR93 TYR94 CYS95 ALA96 ARG97 ALA98 TYR99 GLN100 ARG101 TYR102 ASP103 TYR104 TYR105 ALA106 MET107 ASP108 TYR109 TRP110 GLY111 GLN112 GLY113 THR114 SER115 VAL116 THR117 VAL118 SER119 SER120 ALA121 LYS122 THR123 THR124 ALA125 PRO126 SER127 VAL128 TYR129 PRO130 LEU131 ALA132 PRO133 VAL134 CYS135 SER142 VAL143 THR144 LEU145 GLY146 CYS147 LEU148 VAL149 LYS150 GLY151 TYR152 PHE153 PRO154 GLU155 PRO156 VAL157 THR158 LEU159 THR160 TRP161 ASN162 SER163 GLY164 SER165 LEU166 SER167 SER168 GLY169 VAL170 HIS171 THR172 PHE173 PRO174 ALA175 VAL176 LEU177 GLN178 SER179 ASP180 LEU181 TYR182 THR183 LEU184 SER185 SER186 SER187 VAL188 THR189 VAL190 THR191 SER192 SER193 THR194 TRP195 PRO196 SER197 GLN198 SER199 ILE200 THR201 CYS202 ASN203 VAL204 ALA205 HIS206 PRO207 ALA208 SER209 SER210 THR211 LYS212 VAL213 ASP214 LYS215 LYS216 ILE217 GLU218 PRO219 ARG220
Ligands
Unit 7 CA301 PO4302 EDO303 NAG304
Unit 8 CA301 PO4302 EDO303 NAG304
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany