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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE NAVAB VOLTAGE-GATED SODIUM CHANNEL CLOSED CONFORMATION
Keywords VOLTAGE-GATED SODIUM CHANNEL, TRANSPORT PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5VB2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ION TRANSPORT PROTEIN  A 262 4078 0
2  Protein   ION TRANSPORT PROTEIN  B 259 3938 0
3  Protein   ION TRANSPORT PROTEIN  C 261 3895 0
4  Protein   ION TRANSPORT PROTEIN  D 268 4218 0
5  Ligand   ION TRANSPORT PROTEIN  A 6 0 323
6  Ligand   ION TRANSPORT PROTEIN  B 7 0 374
7  Ligand   ION TRANSPORT PROTEIN  C 7 0 322
8  Ligand   ION TRANSPORT PROTEIN  D 6 0 268
9 Water     22 0 22
total       1098 16129 1309
Proteins
Unit 1 HIS1000 MET1001 TYR1002 LEU1003 ARG1004 ILE1005 THR1006 ASN1007 ILE1008 VAL1009 GLU1010 SER1011 SER1012 PHE1013 PHE1014 THR1015 LYS1016 PHE1017 ILE1018 ILE1019 TYR1020 LEU1021 ILE1022 VAL1023 LEU1024 ASN1025 GLY1026 ILE1027 THR1028 MET1029 GLY1030 LEU1031 GLU1032 THR1033 SER1034 LYS1035 THR1036 PHE1037 MET1038 GLN1039 SER1040 PHE1041 GLY1042 VAL1043 TYR1044 THR1045 THR1046 LEU1047 PHE1048 ASN1049 GLN1050 ILE1051 VAL1052 ILE1053 THR1054 ILE1055 PHE1056 THR1057 ILE1058 GLU1059 ILE1060 ILE1061 LEU1062 ARG1063 ILE1064 TYR1065 VAL1066 HIS1067 ARG1068 ILE1069 SER1070 PHE1071 PHE1072 LYS1073 ASP1074 PRO1075 TRP1076 SER1077 LEU1078 PHE1079 ASP1080 PHE1081 PHE1082 VAL1083 VAL1084 ALA1085 ILE1086 SER1087 LEU1088 VAL1089 PRO1090 THR1091 GLU1096 ILE1097 LEU1098 ARG1099 VAL1100 LEU1101 ARG1102 VAL1103 LEU1104 ARG1105 LEU1106 PHE1107 ARG1108 LEU1109 VAL1110 THR1111 ALA1112 VAL1113 PRO1114 GLN1115 MET1116 ARG1117 LYS1118 ILE1119 VAL1120 SER1121 ALA1122 LEU1123 ILE1124 SER1125 VAL1126 ILE1127 PRO1128 GLY1129 MET1130 LEU1131 SER1132 VAL1133 ILE1134 ALA1135 LEU1136 MET1137 THR1138 LEU1139 PHE1140 PHE1141 TYR1142 ILE1143 PHE1144 ALA1145 ILE1146 MET1147 ALA1148 THR1149 GLN1150 LEU1151 PHE1152 GLY1153 GLU1154 ARG1155 PHE1156 PRO1157 GLU1158 TRP1159 PHE1160 GLY1161 THR1162 LEU1163 GLY1164 GLU1165 SER1166 PHE1167 TYR1168 THR1169 LEU1170 PHE1171 GLN1172 VAL1173 MET1174 THR1175 LEU1176 GLU1177 SER1178 TRP1179 SER1180 MET1181 GLY1182 ILE1183 VAL1184 ARG1185 PRO1186 LEU1187 MET1188 GLU1189 VAL1190 TYR1191 PRO1192 TYR1193 ALA1194 TRP1195 VAL1196 PHE1197 PHE1198 ILE1199 PRO1200 PHE1201 ILE1202 PHE1203 VAL1204 VAL1205 PHE1206 PHE1207 VAL1208 MET1209 ILE1210 ASN1211 LEU1212 TYR1213 VAL1214 ALA1215 ILE1216 ILE1217 VAL1218 ASP1219 ALA1220 MET1221 ALA1222 ILE1223 LEU1224 ASN1225 GLN1226 LYS1227 GLU1228 GLU1229 GLN1230 HIS1231 ILE1232 ILE1233 ASP1234 GLU1235 VAL1236 GLN1237 SER1238 HIS1239 GLU1240 ASP1241 ASN1242 ILE1243 ASN1244 ASN1245 GLU1246 ILE1247 ILE1248 LYS1249 LEU1250 ARG1251 GLU1252 GLU1253 ILE1254 VAL1255 GLU1256 LEU1257 LYS1258 GLU1259 LEU1260 ILE1261 LYS1262 THR1263 SER1264 LEU1265
Unit 2 MET2001 TYR2002 LEU2003 ARG2004 ILE2005 THR2006 ASN2007 ILE2008 VAL2009 GLU2010 SER2011 SER2012 PHE2013 PHE2014 THR2015 LYS2016 PHE2017 ILE2018 ILE2019 TYR2020 LEU2021 ILE2022 VAL2023 LEU2024 ASN2025 GLY2026 ILE2027 THR2028 MET2029 GLY2030 LEU2031 GLU2032 THR2033 SER2034 LYS2035 THR2036 PHE2037 MET2038 GLN2039 SER2040 PHE2041 GLY2042 VAL2043 TYR2044 THR2045 THR2046 LEU2047 PHE2048 ASN2049 GLN2050 ILE2051 VAL2052 ILE2053 THR2054 ILE2055 PHE2056 THR2057 ILE2058 GLU2059 ILE2060 ILE2061 LEU2062 ARG2063 ILE2064 TYR2065 VAL2066 HIS2067 ARG2068 ILE2069 SER2070 PHE2071 PHE2072 LYS2073 ASP2074 PRO2075 TRP2076 SER2077 LEU2078 PHE2079 ASP2080 PHE2081 PHE2082 VAL2083 VAL2084 ALA2085 ILE2086 SER2087 LEU2088 VAL2089 PRO2090 THR2091 SER2092 SER2093 PHE2095 GLU2096 ILE2097 LEU2098 ARG2099 VAL2100 LEU2101 ARG2102 VAL2103 LEU2104 ARG2105 LEU2106 PHE2107 ARG2108 LEU2109 VAL2110 THR2111 ALA2112 VAL2113 PRO2114 GLN2115 MET2116 ARG2117 LYS2118 ILE2119 VAL2120 SER2121 ALA2122 LEU2123 ILE2124 SER2125 VAL2126 ILE2127 PRO2128 GLY2129 MET2130 LEU2131 SER2132 VAL2133 ILE2134 ALA2135 LEU2136 MET2137 THR2138 LEU2139 PHE2140 PHE2141 TYR2142 ILE2143 PHE2144 ALA2145 ILE2146 MET2147 ALA2148 THR2149 GLN2150 LEU2151 PHE2152 GLY2153 GLU2154 ARG2155 PHE2156 PRO2157 GLU2158 TRP2159 PHE2160 GLY2161 THR2162 LEU2163 GLY2164 GLU2165 SER2166 PHE2167 TYR2168 THR2169 LEU2170 PHE2171 GLN2172 VAL2173 MET2174 THR2175 LEU2176 GLU2177 SER2178 TRP2179 SER2180 MET2181 GLY2182 ILE2183 VAL2184 ARG2185 PRO2186 LEU2187 MET2188 GLU2189 VAL2190 TYR2191 PRO2192 TYR2193 ALA2194 TRP2195 VAL2196 PHE2197 PHE2198 ILE2199 PRO2200 PHE2201 ILE2202 PHE2203 VAL2204 VAL2205 PHE2206 PHE2207 VAL2208 MET2209 ILE2210 ASN2211 LEU2212 TYR2213 VAL2214 ALA2215 ILE2216 ILE2217 VAL2218 ASP2219 ALA2220 MET2221 ALA2222 ILE2223 LEU2224 ASN2225 GLN2226 LYS2227 GLU2228 GLU2229 GLN2230 HIS2231 ILE2232 ILE2233 ASP2234 GLU2235 VAL2236 GLN2237 SER2238 HIS2239 GLU2240 ASP2241 ASN2242 ILE2243 ASN2244 ASN2245 GLU2246 ILE2247 ILE2248 LYS2249 LEU2250 ARG2251 GLU2252 GLU2253 ILE2254 VAL2255 GLU2256 LEU2257 LYS2258 GLU2259 LEU2260
Unit 3 TYR1002 LEU1003 ARG1004 ILE1005 THR1006 ASN1007 ILE1008 VAL1009 GLU1010 SER1011 SER1012 PHE1013 PHE1014 THR1015 LYS1016 PHE1017 ILE1018 ILE1019 TYR1020 LEU1021 ILE1022 VAL1023 LEU1024 ASN1025 GLY1026 ILE1027 THR1028 MET1029 GLY1030 LEU1031 GLU1032 THR1033 SER1034 LYS1035 THR1036 PHE1037 MET1038 GLN1039 SER1040 PHE1041 GLY1042 VAL1043 TYR1044 THR1045 THR1046 LEU1047 PHE1048 ASN1049 GLN1050 ILE1051 VAL1052 ILE1053 THR1054 ILE1055 PHE1056 THR1057 ILE1058 GLU1059 ILE1060 ILE1061 LEU1062 ARG1063 ILE1064 TYR1065 VAL1066 HIS1067 ARG1068 ILE1069 SER1070 PHE1071 PHE1072 LYS1073 ASP1074 PRO1075 TRP1076 SER1077 LEU1078 PHE1079 ASP1080 PHE1081 PHE1082 VAL1083 VAL1084 ALA1085 ILE1086 SER1087 LEU1088 VAL1089 PRO1090 THR1091 SER1092 PHE1095 GLU1096 ILE1097 LEU1098 ARG1099 VAL1100 LEU1101 ARG1102 VAL1103 LEU1104 ARG1105 LEU1106 PHE1107 ARG1108 LEU1109 VAL1110 THR1111 ALA1112 VAL1113 PRO1114 GLN1115 MET1116 ARG1117 LYS1118 ILE1119 VAL1120 SER1121 ALA1122 LEU1123 ILE1124 SER1125 VAL1126 ILE1127 PRO1128 GLY1129 MET1130 LEU1131 SER1132 VAL1133 ILE1134 ALA1135 LEU1136 MET1137 THR1138 LEU1139 PHE1140 PHE1141 TYR1142 ILE1143 PHE1144 ALA1145 ILE1146 MET1147 ALA1148 THR1149 GLN1150 LEU1151 PHE1152 GLY1153 GLU1154 ARG1155 PHE1156 PRO1157 GLU1158 TRP1159 PHE1160 GLY1161 THR1162 LEU1163 GLY1164 GLU1165 SER1166 PHE1167 TYR1168 THR1169 LEU1170 PHE1171 GLN1172 VAL1173 MET1174 THR1175 LEU1176 GLU1177 SER1178 TRP1179 SER1180 MET1181 GLY1182 ILE1183 VAL1184 ARG1185 PRO1186 LEU1187 MET1188 GLU1189 VAL1190 TYR1191 PRO1192 TYR1193 ALA1194 TRP1195 VAL1196 PHE1197 PHE1198 ILE1199 PRO1200 PHE1201 ILE1202 PHE1203 VAL1204 VAL1205 PHE1206 PHE1207 VAL1208 MET1209 ILE1210 ASN1211 LEU1212 TYR1213 VAL1214 ALA1215 ILE1216 ILE1217 VAL1218 ASP1219 ALA1220 MET1221 ALA1222 ILE1223 LEU1224 ASN1225 GLN1226 LYS1227 GLU1228 GLU1229 GLN1230 HIS1231 ILE1232 ILE1233 ASP1234 GLU1235 VAL1236 GLN1237 SER1238 HIS1239 GLU1240 ASP1241 ASN1242 ILE1243 ASN1244 ASN1245 GLU1246 ILE1247 ILE1248 LYS1249 LEU1250 ARG1251 GLU1252 GLU1253 ILE1254 VAL1255 GLU1256 LEU1257 LYS1258 GLU1259 LEU1260 ILE1261 LYS1262 THR1263 SER1264
Unit 4 VAL1995 PRO1996 ARG1997 GLY1998 SER1999 HIS2000 MET2001 TYR2002 LEU2003 ARG2004 ILE2005 THR2006 ASN2007 ILE2008 VAL2009 GLU2010 SER2011 SER2012 PHE2013 PHE2014 THR2015 LYS2016 PHE2017 ILE2018 ILE2019 TYR2020 LEU2021 ILE2022 VAL2023 LEU2024 ASN2025 GLY2026 ILE2027 THR2028 MET2029 GLY2030 LEU2031 GLU2032 THR2033 SER2034 LYS2035 THR2036 PHE2037 MET2038 GLN2039 SER2040 PHE2041 GLY2042 VAL2043 TYR2044 THR2045 THR2046 LEU2047 PHE2048 ASN2049 GLN2050 ILE2051 VAL2052 ILE2053 THR2054 ILE2055 PHE2056 THR2057 ILE2058 GLU2059 ILE2060 ILE2061 LEU2062 ARG2063 ILE2064 TYR2065 VAL2066 HIS2067 ARG2068 ILE2069 SER2070 PHE2071 PHE2072 LYS2073 ASP2074 PRO2075 TRP2076 SER2077 LEU2078 PHE2079 ASP2080 PHE2081 PHE2082 VAL2083 VAL2084 ALA2085 ILE2086 SER2087 LEU2088 VAL2089 PRO2090 THR2091 SER2092 SER2093 GLY2094 PHE2095 GLU2096 ILE2097 LEU2098 ARG2099 VAL2100 LEU2101 ARG2102 VAL2103 LEU2104 ARG2105 LEU2106 PHE2107 ARG2108 LEU2109 VAL2110 THR2111 ALA2112 VAL2113 PRO2114 GLN2115 MET2116 ARG2117 LYS2118 ILE2119 VAL2120 SER2121 ALA2122 LEU2123 ILE2124 SER2125 VAL2126 ILE2127 PRO2128 GLY2129 MET2130 LEU2131 SER2132 VAL2133 ILE2134 ALA2135 LEU2136 MET2137 THR2138 LEU2139 PHE2140 PHE2141 TYR2142 ILE2143 PHE2144 ALA2145 ILE2146 MET2147 ALA2148 THR2149 GLN2150 LEU2151 PHE2152 GLY2153 GLU2154 ARG2155 PHE2156 PRO2157 GLU2158 TRP2159 PHE2160 GLY2161 THR2162 LEU2163 GLY2164 GLU2165 SER2166 PHE2167 TYR2168 THR2169 LEU2170 PHE2171 GLN2172 VAL2173 MET2174 THR2175 LEU2176 GLU2177 SER2178 TRP2179 SER2180 MET2181 GLY2182 ILE2183 VAL2184 ARG2185 PRO2186 LEU2187 MET2188 GLU2189 VAL2190 TYR2191 PRO2192 TYR2193 ALA2194 TRP2195 VAL2196 PHE2197 PHE2198 ILE2199 PRO2200 PHE2201 ILE2202 PHE2203 VAL2204 VAL2205 PHE2206 PHE2207 VAL2208 MET2209 ILE2210 ASN2211 LEU2212 TYR2213 VAL2214 ALA2215 ILE2216 ILE2217 VAL2218 ASP2219 ALA2220 MET2221 ALA2222 ILE2223 LEU2224 ASN2225 GLN2226 LYS2227 GLU2228 GLU2229 GLN2230 HIS2231 ILE2232 ILE2233 ASP2234 GLU2235 VAL2236 GLN2237 SER2238 HIS2239 GLU2240 ASP2241 ASN2242 ILE2243 ASN2244 ASN2245 GLU2246 ILE2247 ILE2248 LYS2249 LEU2250 ARG2251 GLU2252 GLU2253 ILE2254 VAL2255 GLU2256 LEU2257 LYS2258 GLU2259 LEU2260 ILE2261 LYS2262
Ligands
Unit 5 CPS1301 CPS1302 PX41303 PX41304 PX41305 PO41306
Unit 6 CPS2301 CPS2302 PX42303 PX42304 PX42305 PX42306 PO42307
Unit 7 CPS1301 CPS1302 PX41303 PX41304 PX41305 PO41306 CL1307
Unit 8 CPS2301 CPS2302 PX42303 PX42304 PX42305 PO42306
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany