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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF PLEXIN D1 INTRACELLULAR DOMAIN
Keywords RAP GAP, PROTEIN BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5V6R     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PLEXIN-D1  A 505 4068 0
2  Protein   PLEXIN-D1  B 503 4024 0
3 Water     98 0 98
total       1106 8092 98
Proteins
Unit 1 GLY1345 ILE1346 PRO1347 PHE1348 LEU1349 GLU1350 TYR1351 LYS1352 HIS1353 PHE1354 VAL1355 THR1356 ARG1357 THR1358 PHE1359 PHE1360 PRO1361 THR1389 HIS1390 PRO1391 LEU1392 LEU1393 GLY1394 GLU1395 TRP1396 ASN1397 ILE1398 PRO1399 GLU1400 HIS1401 CYS1402 ARG1403 PRO1404 SER1405 MET1406 GLU1407 GLU1408 GLY1409 ILE1410 SER1411 LEU1412 PHE1413 SER1414 SER1415 LEU1416 LEU1417 ASN1418 ASN1419 LYS1420 HIS1421 PHE1422 LEU1423 ILE1424 VAL1425 PHE1426 VAL1427 HIS1428 ALA1429 LEU1430 GLU1431 GLN1432 GLN1433 LYS1434 ASP1435 PHE1436 ALA1437 VAL1438 ARG1439 ASP1440 ARG1441 CYS1442 SER1443 LEU1444 ALA1445 SER1446 LEU1447 LEU1448 THR1449 ILE1450 ALA1451 LEU1452 HIS1453 GLY1454 LYS1455 LEU1456 GLU1457 TYR1458 TYR1459 THR1460 SER1461 ILE1462 MET1463 LYS1464 GLU1465 LEU1466 LEU1467 VAL1468 ASP1469 LEU1470 ILE1471 ASP1472 ALA1473 SER1474 ALA1475 ALA1476 LYS1477 ASN1478 PRO1479 LYS1480 LEU1481 MET1482 LEU1483 ARG1484 ARG1485 THR1486 GLU1487 SER1488 VAL1489 VAL1490 GLU1491 LYS1492 MET1493 LEU1494 THR1495 ASN1496 TRP1497 MET1498 SER1499 ILE1500 CYS1501 MET1502 TYR1503 GLY1504 CYS1505 LEU1506 ARG1507 GLU1508 THR1509 VAL1510 GLY1511 GLU1512 PRO1513 PHE1514 PHE1515 LEU1516 LEU1517 LEU1518 CYS1519 ALA1520 ILE1521 LYS1522 GLN1523 GLN1524 ILE1525 ASN1526 LYS1527 GLY1528 SER1529 ILE1530 ASP1531 ALA1532 ILE1533 THR1534 GLY1535 LYS1536 ALA1537 ARG1538 TYR1539 THR1540 LEU1541 ASN1542 GLU1543 GLU1544 TRP1545 LEU1546 LEU1547 ARG1548 GLU1549 ASN1550 ILE1551 GLU1552 ALA1553 LYS1554 PRO1555 ARG1556 ASN1557 LEU1558 ASN1559 VAL1560 SER1561 PHE1562 GLN1563 ASP1568 SER1569 LEU1570 SER1571 VAL1572 ARG1573 ALA1574 MET1575 ASP1576 THR1577 ASP1578 THR1579 LEU1580 THR1581 GLN1582 VAL1583 LYS1584 GLU1585 LYS1586 ILE1587 LEU1588 GLU1589 ALA1590 PHE1591 CYS1592 LYS1593 ASN1594 VAL1595 PRO1596 TYR1597 SER1598 GLN1599 TRP1600 PRO1601 ARG1602 ALA1603 GLU1604 ASP1605 VAL1606 ASP1607 LEU1608 GLU1609 TRP1610 PHE1611 ALA1612 SER1613 SER1614 THR1615 GLN1616 SER1617 TYR1618 VAL1619 LEU1620 ARG1621 ASP1622 LEU1623 ASP1624 ASP1625 THR1626 SER1627 VAL1628 VAL1629 GLU1630 ASP1631 GLY1632 ARG1633 LYS1634 LYS1635 LEU1636 ASN1637 THR1638 LEU1639 ALA1640 HIS1641 TYR1642 LYS1643 ILE1644 PRO1645 GLU1646 GLY1647 ALA1648 SER1649 LEU1650 ALA1651 MET1652 SER1653 LEU1654 THR1655 THR1670 GLU1671 LYS1672 TYR1673 PHE1674 HIS1675 LEU1676 VAL1677 LYS1697 VAL1698 LEU1699 PRO1700 GLU1701 ILE1702 TYR1703 LEU1704 THR1705 ARG1706 LEU1707 LEU1708 SER1709 THR1710 LYS1711 GLY1712 THR1713 LEU1714 GLN1715 LYS1716 PHE1717 LEU1718 ASP1719 ASP1720 LEU1721 PHE1722 LYS1723 ALA1724 ILE1725 LEU1726 SER1727 ILE1728 ARG1729 GLU1730 ASP1731 LYS1732 PRO1733 PRO1734 LEU1735 ALA1736 VAL1737 LYS1738 TYR1739 PHE1740 PHE1741 ASP1742 PHE1743 LEU1744 GLU1745 GLU1746 GLN1747 ALA1748 GLU1749 LYS1750 ARG1751 GLY1752 ILE1753 SER1754 ASP1755 PRO1756 ASP1757 THR1758 LEU1759 HIS1760 ILE1761 TRP1762 LYS1763 THR1764 ASN1765 SER1766 LEU1767 PRO1768 LEU1769 ARG1770 PHE1771 TRP1772 VAL1773 ASN1774 ILE1775 LEU1776 LYS1777 ASN1778 PRO1779 GLN1780 PHE1781 VAL1782 PHE1783 ASP1784 ILE1785 GLU1786 LYS1787 THR1788 ASP1789 HIS1790 ILE1791 ASP1792 ALA1793 CYS1794 LEU1795 SER1796 VAL1797 ILE1798 ALA1799 GLN1800 ALA1801 PHE1802 ILE1803 ASP1804 ALA1805 CYS1806 SER1807 ILE1808 SER1809 ASN1820 LYS1821 LEU1822 LEU1823 TYR1824 ALA1825 LYS1826 GLU1827 ILE1828 PRO1829 GLU1830 TYR1831 ARG1832 LYS1833 THR1834 VAL1835 GLN1836 ARG1837 TYR1838 TYR1839 LYS1840 GLN1841 ILE1842 GLN1843 ASP1844 MET1845 THR1846 PRO1847 LEU1848 SER1849 GLU1850 GLN1851 GLU1852 MET1853 ASN1854 ALA1855 HIS1856 LEU1857 ALA1858 GLU1859 GLU1860 SER1861 ARG1862 LYS1863 TYR1864 GLN1865 ASN1866 GLU1867 PHE1868 ASN1869 THR1870 ASN1871 VAL1872 ALA1873 MET1874 ALA1875 GLU1876 ILE1877 TYR1878 LYS1879 TYR1880 ALA1881 LYS1882 ARG1883 TYR1884 ARG1885 PRO1886 GLN1887 ILE1888 MET1889 ALA1890 ALA1891 LEU1892 GLU1893 ALA1894 ASN1895 PRO1896 THR1897 ALA1898 ARG1899 ARG1900 THR1901 GLN1902 LEU1903 GLN1904 HIS1905 LYS1906 PHE1907 GLU1908 GLN1909 VAL1910 VAL1911 ALA1912 LEU1913 MET1914 GLU1915 ASN1916 ASN1917 ILE1918 TYR1919 GLU1920 CYS1921 TYR1922 SER1923
Unit 2 GLY1345 ILE1346 PRO1347 PHE1348 LEU1349 GLU1350 TYR1351 LYS1352 HIS1353 PHE1354 VAL1355 THR1356 ARG1357 THR1358 PHE1359 PHE1360 PRO1361 THR1389 HIS1390 PRO1391 LEU1392 LEU1393 GLY1394 GLU1395 TRP1396 ASN1397 ILE1398 PRO1399 GLU1400 HIS1401 CYS1402 ARG1403 PRO1404 SER1405 MET1406 GLU1407 GLU1408 GLY1409 ILE1410 SER1411 LEU1412 PHE1413 SER1414 SER1415 LEU1416 LEU1417 ASN1418 ASN1419 LYS1420 HIS1421 PHE1422 LEU1423 ILE1424 VAL1425 PHE1426 VAL1427 HIS1428 ALA1429 LEU1430 GLU1431 GLN1432 GLN1433 LYS1434 ASP1435 PHE1436 ALA1437 VAL1438 ARG1439 ASP1440 ARG1441 CYS1442 SER1443 LEU1444 ALA1445 SER1446 LEU1447 LEU1448 THR1449 ILE1450 ALA1451 LEU1452 HIS1453 GLY1454 LYS1455 LEU1456 GLU1457 TYR1458 TYR1459 THR1460 SER1461 ILE1462 MET1463 LYS1464 GLU1465 LEU1466 LEU1467 VAL1468 ASP1469 LEU1470 ILE1471 ASP1472 ALA1473 SER1474 ALA1475 ALA1476 LYS1477 ASN1478 PRO1479 LYS1480 LEU1481 MET1482 LEU1483 ARG1484 ARG1485 THR1486 GLU1487 SER1488 VAL1489 VAL1490 GLU1491 LYS1492 MET1493 LEU1494 THR1495 ASN1496 TRP1497 MET1498 SER1499 ILE1500 CYS1501 MET1502 TYR1503 GLY1504 CYS1505 LEU1506 ARG1507 GLU1508 THR1509 VAL1510 GLY1511 GLU1512 PRO1513 PHE1514 PHE1515 LEU1516 LEU1517 LEU1518 CYS1519 ALA1520 ILE1521 LYS1522 GLN1523 GLN1524 ILE1525 ASN1526 LYS1527 GLY1528 SER1529 ILE1530 ASP1531 ALA1532 ILE1533 THR1534 GLY1535 LYS1536 ALA1537 ARG1538 TYR1539 THR1540 LEU1541 ASN1542 GLU1543 GLU1544 TRP1545 LEU1546 LEU1547 ARG1548 GLU1549 ASN1550 ILE1551 GLU1552 ALA1553 LYS1554 PRO1555 ARG1556 ASN1557 LEU1558 ASN1559 VAL1560 SER1561 PHE1562 GLN1563 ASP1568 SER1569 LEU1570 SER1571 VAL1572 ARG1573 ALA1574 MET1575 ASP1576 THR1577 ASP1578 THR1579 LEU1580 THR1581 GLN1582 VAL1583 LYS1584 GLU1585 LYS1586 ILE1587 LEU1588 GLU1589 ALA1590 PHE1591 CYS1592 LYS1593 ASN1594 VAL1595 PRO1596 TYR1597 SER1598 GLN1599 TRP1600 PRO1601 ARG1602 ALA1603 GLU1604 ASP1605 VAL1606 ASP1607 LEU1608 GLU1609 TRP1610 PHE1611 ALA1612 SER1613 SER1614 THR1615 GLN1616 SER1617 TYR1618 VAL1619 LEU1620 ARG1621 ASP1622 LEU1623 ASP1624 ASP1625 THR1626 SER1627 VAL1628 VAL1629 GLU1630 ASP1631 GLY1632 ARG1633 LYS1634 LYS1635 LEU1636 ASN1637 THR1638 LEU1639 ALA1640 HIS1641 TYR1642 LYS1643 ILE1644 PRO1645 GLU1646 GLY1647 ALA1648 SER1649 LEU1650 ALA1651 MET1652 SER1653 LEU1654 THR1655 ASP1656 THR1670 GLU1671 LYS1672 TYR1673 PHE1674 HIS1675 LEU1676 VAL1677 VAL1698 LEU1699 PRO1700 GLU1701 ILE1702 TYR1703 LEU1704 THR1705 ARG1706 LEU1707 LEU1708 SER1709 THR1710 LYS1711 GLY1712 THR1713 LEU1714 GLN1715 LYS1716 PHE1717 LEU1718 ASP1719 ASP1720 LEU1721 PHE1722 LYS1723 ALA1724 ILE1725 LEU1726 SER1727 ILE1728 ARG1729 GLU1730 ASP1731 LYS1732 PRO1733 PRO1734 LEU1735 ALA1736 VAL1737 LYS1738 TYR1739 PHE1740 PHE1741 ASP1742 PHE1743 LEU1744 GLU1745 GLU1746 GLN1747 ALA1748 GLU1749 LYS1750 ARG1751 GLY1752 ILE1753 SER1754 ASP1755 PRO1756 ASP1757 THR1758 LEU1759 HIS1760 ILE1761 TRP1762 LYS1763 THR1764 ASN1765 SER1766 LEU1767 PRO1768 LEU1769 ARG1770 PHE1771 TRP1772 VAL1773 ASN1774 ILE1775 LEU1776 LYS1777 ASN1778 PRO1779 GLN1780 PHE1781 VAL1782 PHE1783 ASP1784 ILE1785 GLU1786 LYS1787 THR1788 ASP1789 HIS1790 ILE1791 ASP1792 ALA1793 CYS1794 LEU1795 SER1796 VAL1797 ILE1798 ALA1799 GLN1800 ALA1801 PHE1802 ILE1803 ASP1804 ALA1805 CYS1806 SER1807 ILE1808 SER1809 LYS1821 LEU1822 LEU1823 TYR1824 ALA1825 LYS1826 GLU1827 ILE1828 PRO1829 GLU1830 TYR1831 ARG1832 LYS1833 THR1834 VAL1835 GLN1836 ARG1837 TYR1838 TYR1839 LYS1840 GLN1841 ILE1842 GLN1843 ASP1844 MET1845 THR1846 PRO1847 LEU1848 SER1849 GLU1850 GLN1851 GLU1852 MET1853 ASN1854 ALA1855 HIS1856 LEU1857 ALA1858 GLU1859 GLU1860 SER1861 ARG1862 LYS1863 TYR1864 GLN1865 ASN1866 GLU1867 PHE1868 ASN1869 THR1870 ASN1871 VAL1872 ALA1873 MET1874 ALA1875 GLU1876 ILE1877 TYR1878 LYS1879 TYR1880 ALA1881 LYS1882 ARG1883 TYR1884 ARG1885 PRO1886 GLN1887 ILE1888 MET1889 ALA1890 ALA1891 LEU1892 GLU1893 ALA1894 ASN1895 PRO1896 THR1897 ALA1898 ARG1899 ARG1900 THR1901 GLN1902 LEU1903 GLN1904 HIS1905 LYS1906 PHE1907 GLU1908 GLN1909 VAL1910 VAL1911 ALA1912 LEU1913 MET1914 GLU1915 ASN1916 ASN1917 ILE1918 TYR1919 GLU1920 CYS1921 TYR1922
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany