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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CTCF(ZNF 4-10) WITH 28-MER DNA
Keywords TRANSCRIPTION FACTOR ZINC FINGER PROTEIN-DNA BINDING INSULATOR/CHROMATIN ARCHITECTURE, TRANSCRIPTION-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5UND     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRANSCRIPTIONAL REPRESSOR CTCF  A 171 1338 0
2  Other macromolecule   DNA (26-MER)  C 26 521 0
3  Other macromolecule   DNA (26-MER)  D 26 541 0
4  Protein   TRANSCRIPTIONAL REPRESSOR CTCF  B 145 1148 0
5  Other macromolecule   DNA (26-MER)  E 26 521 0
6  Other macromolecule   DNA (26-MER)  F 25 519 0
7  Ligand   TRANSCRIPTIONAL REPRESSOR CTCF  A 7 0 7
8  Ligand   DNA (26-MER)  D 2 0 8
9  Ligand   TRANSCRIPTIONAL REPRESSOR CTCF  B 7 0 15
10  Ligand   DNA (26-MER)  E 1 0 4
11  Ligand   DNA (26-MER)  F 2 0 8
12 Water     76 0 77
total       514 4588 119

Proteins
Unit 1 GLU348 LYS349 PRO350 PHE351 LYS352 CYS353 SER354 MET355 CYS356 ASP357 TYR358 ALA359 SER360 VAL361 GLU362 VAL363 SER364 LYS365 LEU366 LYS367 ARG368 HIS369 ILE370 ARG371 SER372 HIS373 THR374 GLY375 GLU376 ARG377 PRO378 PHE379 GLN380 CYS381 SER382 LEU383 CYS384 SER385 TYR386 ALA387 SER388 ARG389 ASP390 THR391 TYR392 LYS393 LEU394 LYS395 ARG396 HIS397 MET398 ARG399 THR400 HIS401 SER402 GLY403 GLU404 LYS405 PRO406 TYR407 GLU408 CYS409 TYR410 ILE411 CYS412 HIS413 ALA414 ARG415 PHE416 THR417 GLN418 SER419 GLY420 THR421 MET422 LYS423 MET424 HIS425 ILE426 LEU427 GLN428 LYS429 HIS430 THR431 GLU432 ASN433 VAL434 ALA435 LYS436 PHE437 HIS438 CYS439 PRO440 HIS441 CYS442 ASP443 THR444 VAL445 ILE446 ALA447 ARG448 LYS449 SER450 ASP451 LEU452 GLY453 VAL454 HIS455 LEU456 ARG457 LYS458 GLN459 HIS460 SER461 TYR462 ILE463 GLU464 GLN465 GLY466 LYS467 LYS468 CYS469 ARG470 TYR471 CYS472 ASP473 ALA474 VAL475 PHE476 HIS477 GLU478 ARG479 TYR480 ALA481 LEU482 ILE483 GLN484 HIS485 GLN486 LYS487 SER488 HIS489 LYS490 ASN491 GLU492 LYS493 ARG494 PHE495 LYS496 CYS497 ASP498 GLN499 CYS500 ASP501 TYR502 ALA503 CYS504 ARG505 GLN506 GLU507 ARG508 HIS509 MET510 ILE511 MET512 HIS513 LYS514 ARG515 THR516 HIS517 THR518
Unit 4 GLU348 LYS349 PRO350 PHE351 LYS352 CYS353 SER354 MET355 CYS356 ASP357 TYR358 ALA359 SER360 VAL361 GLU362 VAL363 SER364 LYS365 LEU366 LYS367 ARG368 HIS369 ILE370 ARG371 SER372 HIS373 THR374 GLY375 GLU376 ARG377 PRO378 PHE379 GLN380 CYS381 SER382 LEU383 CYS384 SER385 TYR386 ALA387 SER388 ARG389 ASP390 THR391 TYR392 LYS393 LEU394 LYS395 ARG396 HIS397 MET398 ARG399 THR400 HIS401 SER402 GLY403 GLU404 LYS405 PRO406 TYR407 GLU408 CYS409 TYR410 ILE411 CYS412 HIS413 ALA414 ARG415 PHE416 THR417 GLN418 SER419 GLY420 THR421 MET422 LYS423 MET424 HIS425 ILE426 LEU427 GLN428 LYS429 HIS430 THR431 GLU432 ASN433 VAL434 ALA435 LYS436 PHE437 HIS438 CYS439 PRO440 HIS441 CYS442 ASP443 THR444 VAL445 ILE446 ALA447 ARG448 LYS449 SER450 ASP451 LEU452 GLY453 VAL454 HIS455 LEU456 ARG457 LYS458 GLN459 HIS460 SER461 TYR462 ILE463 GLU464 GLN465 GLY466 LYS467 LYS468 CYS469 ARG470 TYR471 CYS472 ASP473 ALA474 VAL475 PHE476 HIS477 GLU478 ARG479 TYR480 ALA481 LEU482 ILE483 GLN484 HIS485 GLN486 LYS487 SER488 HIS489 LYS490 ASN491 GLU492

Other macromolecules
Unit 2 DC1 DG2 DC3 DC4 DC5 DC6 DC7 DT8 DG9 DC10 DT11 DG12 DG13 DC14 DC15 DT16 DC17 DT18 DG19 DT20 DG21 DG22 DG23 DC24 DA25 DC26
Unit 3 DG3 DT4 DG5 DC6 DC7 DC8 DA9 DC10 DA11 DG12 DA13 DG14 DG15 DC16 DC17 DA18 DG19 DC20 DA21 DG22 DG23 DG24 DG25 DG26 DC27 DG28
Unit 5 DC1 DG2 DC3 DC4 DC5 DC6 DC7 DT8 DG9 DC10 DT11 DG12 DG13 DC14 DC15 DT16 DC17 DT18 DG19 DT20 DG21 DG22 DG23 DC24 DA25 DC26
Unit 6 DT4 DG5 DC6 DC7 DC8 DA9 DC10 DA11 DG12 DA13 DG14 DG15 DC16 DC17 DA18 DG19 DC20 DA21 DG22 DG23 DG24 DG25 DG26 DC27 DG28

Ligands
Unit 7 ZN601 ZN602 ZN603 ZN604 ZN605 ZN606 ZN607
Unit 8 EDO101 EDO102
Unit 9 ZN601 ZN602 ZN603 ZN604 ZN605 EDO606 GOL607
Unit 10 EDO101
Unit 11 EDO101 EDO102

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany