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Title | CRYSTAL STRUCTURE OF CTCF(ZNF 4-10) WITH 28-MER DNA | |
Keywords | TRANSCRIPTION FACTOR ZINC FINGER PROTEIN-DNA BINDING INSULATOR/CHROMATIN ARCHITECTURE, TRANSCRIPTION-DNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5UND | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | TRANSCRIPTIONAL REPRESSOR CTCF | A | 171 | 1338 | 0 |
2 | Other macromolecule | DNA (26-MER) | C | 26 | 521 | 0 |
3 | Other macromolecule | DNA (26-MER) | D | 26 | 541 | 0 |
4 | Protein | TRANSCRIPTIONAL REPRESSOR CTCF | B | 145 | 1148 | 0 |
5 | Other macromolecule | DNA (26-MER) | E | 26 | 521 | 0 |
6 | Other macromolecule | DNA (26-MER) | F | 25 | 519 | 0 |
7 | Ligand | TRANSCRIPTIONAL REPRESSOR CTCF | A | 7 | 0 | 7 |
8 | Ligand | DNA (26-MER) | D | 2 | 0 | 8 |
9 | Ligand | TRANSCRIPTIONAL REPRESSOR CTCF | B | 7 | 0 | 15 |
10 | Ligand | DNA (26-MER) | E | 1 | 0 | 4 |
11 | Ligand | DNA (26-MER) | F | 2 | 0 | 8 |
12 | Water | 76 | 0 | 77 | ||
total | 514 | 4588 | 119 |
Unit 1 | GLU348 LYS349 PRO350 PHE351 LYS352 CYS353 SER354 MET355 CYS356 ASP357 TYR358 ALA359 SER360 VAL361 GLU362 VAL363 SER364 LYS365 LEU366 LYS367 ARG368 HIS369 ILE370 ARG371 SER372 HIS373 THR374 GLY375 GLU376 ARG377 PRO378 PHE379 GLN380 CYS381 SER382 LEU383 CYS384 SER385 TYR386 ALA387 SER388 ARG389 ASP390 THR391 TYR392 LYS393 LEU394 LYS395 ARG396 HIS397 MET398 ARG399 THR400 HIS401 SER402 GLY403 GLU404 LYS405 PRO406 TYR407 GLU408 CYS409 TYR410 ILE411 CYS412 HIS413 ALA414 ARG415 PHE416 THR417 GLN418 SER419 GLY420 THR421 MET422 LYS423 MET424 HIS425 ILE426 LEU427 GLN428 LYS429 HIS430 THR431 GLU432 ASN433 VAL434 ALA435 LYS436 PHE437 HIS438 CYS439 PRO440 HIS441 CYS442 ASP443 THR444 VAL445 ILE446 ALA447 ARG448 LYS449 SER450 ASP451 LEU452 GLY453 VAL454 HIS455 LEU456 ARG457 LYS458 GLN459 HIS460 SER461 TYR462 ILE463 GLU464 GLN465 GLY466 LYS467 LYS468 CYS469 ARG470 TYR471 CYS472 ASP473 ALA474 VAL475 PHE476 HIS477 GLU478 ARG479 TYR480 ALA481 LEU482 ILE483 GLN484 HIS485 GLN486 LYS487 SER488 HIS489 LYS490 ASN491 GLU492 LYS493 ARG494 PHE495 LYS496 CYS497 ASP498 GLN499 CYS500 ASP501 TYR502 ALA503 CYS504 ARG505 GLN506 GLU507 ARG508 HIS509 MET510 ILE511 MET512 HIS513 LYS514 ARG515 THR516 HIS517 THR518 |
Unit 4 | GLU348 LYS349 PRO350 PHE351 LYS352 CYS353 SER354 MET355 CYS356 ASP357 TYR358 ALA359 SER360 VAL361 GLU362 VAL363 SER364 LYS365 LEU366 LYS367 ARG368 HIS369 ILE370 ARG371 SER372 HIS373 THR374 GLY375 GLU376 ARG377 PRO378 PHE379 GLN380 CYS381 SER382 LEU383 CYS384 SER385 TYR386 ALA387 SER388 ARG389 ASP390 THR391 TYR392 LYS393 LEU394 LYS395 ARG396 HIS397 MET398 ARG399 THR400 HIS401 SER402 GLY403 GLU404 LYS405 PRO406 TYR407 GLU408 CYS409 TYR410 ILE411 CYS412 HIS413 ALA414 ARG415 PHE416 THR417 GLN418 SER419 GLY420 THR421 MET422 LYS423 MET424 HIS425 ILE426 LEU427 GLN428 LYS429 HIS430 THR431 GLU432 ASN433 VAL434 ALA435 LYS436 PHE437 HIS438 CYS439 PRO440 HIS441 CYS442 ASP443 THR444 VAL445 ILE446 ALA447 ARG448 LYS449 SER450 ASP451 LEU452 GLY453 VAL454 HIS455 LEU456 ARG457 LYS458 GLN459 HIS460 SER461 TYR462 ILE463 GLU464 GLN465 GLY466 LYS467 LYS468 CYS469 ARG470 TYR471 CYS472 ASP473 ALA474 VAL475 PHE476 HIS477 GLU478 ARG479 TYR480 ALA481 LEU482 ILE483 GLN484 HIS485 GLN486 LYS487 SER488 HIS489 LYS490 ASN491 GLU492 |
Unit 2 | DC1 DG2 DC3 DC4 DC5 DC6 DC7 DT8 DG9 DC10 DT11 DG12 DG13 DC14 DC15 DT16 DC17 DT18 DG19 DT20 DG21 DG22 DG23 DC24 DA25 DC26 |
Unit 3 | DG3 DT4 DG5 DC6 DC7 DC8 DA9 DC10 DA11 DG12 DA13 DG14 DG15 DC16 DC17 DA18 DG19 DC20 DA21 DG22 DG23 DG24 DG25 DG26 DC27 DG28 |
Unit 5 | DC1 DG2 DC3 DC4 DC5 DC6 DC7 DT8 DG9 DC10 DT11 DG12 DG13 DC14 DC15 DT16 DC17 DT18 DG19 DT20 DG21 DG22 DG23 DC24 DA25 DC26 |
Unit 6 | DT4 DG5 DC6 DC7 DC8 DA9 DC10 DA11 DG12 DA13 DG14 DG15 DC16 DC17 DA18 DG19 DC20 DA21 DG22 DG23 DG24 DG25 DG26 DC27 DG28 |
Unit 7 | ZN601 ZN602 ZN603 ZN604 ZN605 ZN606 ZN607 |
Unit 8 | EDO101 EDO102 |
Unit 9 | ZN601 ZN602 ZN603 ZN604 ZN605 EDO606 GOL607 |
Unit 10 | EDO101 |
Unit 11 | EDO101 EDO102 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |