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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF C05 VPGSGW MUTANT BOUND TO H3 INFLUENZA HEMAGGLUTININ, HA1 SUBUNIT
Keywords INFLUENZA, FAB, HEMAGGLUTININ, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5UMN     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ  A 267 2073 0
2  Protein   HEMAGGLUTININ  B 243 1892 0
3  Protein   ANTIBODY C05 VPGSGW MUTANT, HEAVY CHAIN  C 238 1766 0
4  Protein   ANTIBODY C05, LIGHT CHAIN  D 213 1637 0
5  Protein   ANTIBODY C05 VPGSGW MUTANT, HEAVY CHAIN  E 238 1766 0
6  Protein   ANTIBODY C05, LIGHT CHAIN  F 213 1637 0
7  Ligand   HEMAGGLUTININ  A 3 0 44
8  Ligand   HEMAGGLUTININ  B 6 0 77
9  Ligand   ANTIBODY C05 VPGSGW MUTANT, HEAVY CHAIN  C 2 0 26
10 Water     1113 0 1113
total       2536 10771 1260

Proteins
Unit 1 VAL43 GLN44 SER45 SER46 SER47 THR48 GLY49 LYS50 ILE51 CYS52 ASN53 ASN54 PRO55 HIS56 ARG57 ILE58 LEU59 ASP60 GLY61 ILE62 ASP63 CYS64 THR65 LEU66 ILE67 ASP68 ALA69 LEU70 LEU71 GLY72 ASP73 PRO74 HIS75 CYS76 ASP77 VAL78 PHE79 GLN80 ASN81 GLU82 THR83 TRP84 ASP85 LEU86 PHE87 VAL88 GLU89 ARG90 SER91 LYS92 ALA93 PHE94 SER95 ASN96 CYS97 TYR98 PRO99 TYR100 ASP101 VAL102 PRO103 ASP104 TYR105 ALA106 SER107 LEU108 ARG109 SER110 LEU111 VAL112 ALA113 SER114 SER115 GLY116 THR117 LEU118 GLU119 PHE120 ILE121 THR122 GLU123 GLY124 PHE125 THR126 TRP127 THR128 GLY129 VAL130 THR131 GLN132 ASN133 GLY134 GLY135 SER136 ASN137 ALA138 CYS139 LYS140 ARG141 GLY142 PRO143 GLY144 SER145 GLY146 PHE147 PHE148 SER149 ARG150 LEU151 ASN152 TRP153 LEU154 THR155 LYS156 SER157 GLY158 SER159 THR160 TYR161 PRO162 VAL163 LEU164 ASN165 VAL166 THR167 MET168 PRO169 ASN170 ASN171 ASP172 ASN173 PHE174 ASP175 LYS176 LEU177 TYR178 ILE179 TRP180 GLY181 VAL182 HIS183 HIS184 PRO185 SER186 THR187 ASN188 GLN189 GLU190 GLN191 THR192 SER193 LEU194 TYR195 VAL196 GLN197 ALA198 SER199 GLY200 ARG201 VAL202 THR203 VAL204 SER205 THR206 ARG207 ARG208 SER209 GLN210 GLN211 THR212 ILE213 ILE214 PRO215 ASN216 ILE217 GLY218 SER219 ARG220 PRO221 TRP222 VAL223 ARG224 GLY225 LEU226 SER227 SER228 ARG229 ILE230 SER231 ILE232 TYR233 TRP234 THR235 ILE236 VAL237 LYS238 PRO239 GLY240 ASP241 VAL242 LEU243 VAL244 ILE245 ASN246 SER247 ASN248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 ARG255 GLY256 TYR257 PHE258 LYS259 MET260 ARG261 THR262 GLY263 LYS264 SER265 SER266 ILE267 MET268 ARG269 SER270 ASP271 ALA272 PRO273 ILE274 ASP275 THR276 CYS277 ILE278 SER279 GLU280 CYS281 ILE282 THR283 PRO284 ASN285 GLY286 SER287 ILE288 PRO289 ASN290 ASP291 LYS292 PRO293 PHE294 GLN295 ASN296 VAL297 ASN298 LYS299 ILE300 THR301 TYR302 GLY303 ALA304 CYS305 PRO306 LYS307 TYR308 VAL309
Unit 2 ILE51 CYS52 ASN53 ASN54 PRO55 HIS56 ARG57 ILE58 LEU59 ASP60 GLY61 ILE62 ASP63 CYS64 THR65 LEU66 ILE67 ASP68 ALA69 LEU70 LEU71 GLY72 ASP73 PRO74 HIS75 CYS76 ASP77 VAL78 PHE79 GLN80 ASN81 GLU82 THR83 TRP84 ASP85 LEU86 PHE87 VAL88 GLU89 ARG90 SER91 LYS92 ALA93 PHE94 SER95 ASN96 CYS97 TYR98 PRO99 TYR100 ASP101 VAL102 PRO103 ASP104 TYR105 ALA106 SER107 LEU108 ARG109 SER110 LEU111 VAL112 ALA113 SER114 SER115 GLY116 THR117 LEU118 GLU119 PHE120 ILE121 THR122 GLU123 GLY124 PHE125 THR126 TRP127 THR128 GLY129 VAL130 THR131 GLN132 ASN133 GLY134 GLY135 SER136 ASN137 ALA138 CYS139 LYS140 ARG141 GLY142 PRO143 GLY144 SER145 GLY146 PHE147 PHE148 SER149 ARG150 LEU151 ASN152 TRP153 LEU154 THR155 LYS156 SER157 GLY158 SER159 THR160 TYR161 PRO162 VAL163 LEU164 ASN165 VAL166 THR167 MET168 PRO169 ASN170 ASN171 ASP172 ASN173 PHE174 ASP175 LYS176 LEU177 TYR178 ILE179 TRP180 GLY181 VAL182 HIS183 HIS184 PRO185 SER186 THR187 ASN188 GLN189 GLU190 GLN191 THR192 SER193 LEU194 TYR195 VAL196 GLN197 ALA198 SER199 GLY200 ARG201 VAL202 THR203 VAL204 SER205 THR206 ARG207 ARG208 SER209 GLN210 GLN211 THR212 ILE213 ILE214 PRO215 ASN216 ILE217 GLY218 SER219 ARG220 PRO221 TRP222 VAL223 ARG224 GLY225 LEU226 SER227 SER228 ARG229 ILE230 SER231 ILE232 TYR233 TRP234 THR235 ILE236 VAL237 LYS238 PRO239 GLY240 ASP241 VAL242 LEU243 VAL244 ILE245 ASN246 SER247 ASN248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 ARG255 GLY256 TYR257 PHE258 LYS259 MET260 ARG261 THR262 GLY263 LYS264 SER265 SER266 ILE267 MET268 ARG269 SER270 ASP271 ALA272 PRO273 ILE274 ASP275 THR276 CYS277 ILE278 SER279 GLU280 CYS281 ILE282 THR283 PRO284 ASN285 ASN298 LYS299 ILE300 THR301 TYR302 GLY303 ALA304 CYS305
Unit 3 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLU16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 VAL23 GLY24 SER25 GLY26 SER27 SER27A PHE27B GLY27C GLU27D SER27E THR28 LEU29 SER30 TYR31 TYR32 ALA33 VAL34 SER35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 SER49 ILE50 ILE51 ASN52 ALA52A GLY53 GLY54 GLY55 ASP56 ILE57 ASP58 TYR59 ALA60 ASP61 SER62 VAL63 GLU64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASN73 SER74 LYS75 GLU76 THR77 LEU78 TYR79 LEU80 GLN81 MET82 THR82A ASN82B LEU82C ARG83 VAL84 GLU85 ASP86 THR87 GLY88 VAL89 TYR90 TYR91 CYS92 ALA93 LYS94 HIS95 MET96 SER97 MET98 GLN99 GLN100 VAL100A PRO100B GLY100C SER100D GLY100E TRP100F GLU100G ARG100H ALA100I ASP100J LEU100K VAL100L GLY100M ASP100N ALA100O PHE100P ASP101 VAL102 TRP103 GLY104 GLN105 GLY106 THR107 MET108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212 PRO213 LYS214
Unit 4 ASP1 ILE2 GLN3 LEU4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 LEU21 THR22 CYS23 GLN24 ALA25 SER26 GLN27 ASP28 ILE29 ARG30 LYS31 PHE32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 GLY43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 ASP50 ALA51 SER52 ASN53 LEU54 GLN55 ARG56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 GLY65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 ILE74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 VAL83 GLY84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 TYR91 ASP92 GLY93 LEU94 PRO95 PHE96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 VAL104 VAL105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213
Unit 5 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLU16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 VAL23 GLY24 SER25 GLY26 SER27 SER27A PHE27B GLY27C GLU27D SER27E THR28 LEU29 SER30 TYR31 TYR32 ALA33 VAL34 SER35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 SER49 ILE50 ILE51 ASN52 ALA52A GLY53 GLY54 GLY55 ASP56 ILE57 ASP58 TYR59 ALA60 ASP61 SER62 VAL63 GLU64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASN73 SER74 LYS75 GLU76 THR77 LEU78 TYR79 LEU80 GLN81 MET82 THR82A ASN82B LEU82C ARG83 VAL84 GLU85 ASP86 THR87 GLY88 VAL89 TYR90 TYR91 CYS92 ALA93 LYS94 HIS95 MET96 SER97 MET98 GLN99 GLN100 VAL100A PRO100B GLY100C SER100D GLY100E TRP100F GLU100G ARG100H ALA100I ASP100J LEU100K VAL100L GLY100M ASP100N ALA100O PHE100P ASP101 VAL102 TRP103 GLY104 GLN105 GLY106 THR107 MET108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212 PRO213 LYS214
Unit 6 ASP1 ILE2 GLN3 LEU4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 LEU21 THR22 CYS23 GLN24 ALA25 SER26 GLN27 ASP28 ILE29 ARG30 LYS31 PHE32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 GLY43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 ASP50 ALA51 SER52 ASN53 LEU54 GLN55 ARG56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 GLY65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 ILE74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 VAL83 GLY84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 TYR91 ASP92 GLY93 LEU94 PRO95 PHE96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 VAL104 VAL105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213

Ligands
Unit 7 NAG401 NAG402 1PE403
Unit 8 NAG401 NAG402 1PE403 1PE404 1PE405 NA406
Unit 9 FLC301 FLC302

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany