5UBK - Sequence, Chains, Asymmetric and Biological Units

• Title: INACTIVE S1A/N269D-CPPVDQ MUTANT IN COMPLEX WITH THE PYOVERD PRECURSOR PVDIQ REVEALS A SPECIFIC BINDING POCKET FOR THE D THIS SUBSTRATE
• Keywords: CPPVDQ, CPPVDQ S1A/269D, PYOVERDINE PRECURSOR, SUBSTRATE:MUT COMPLEX, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5UBK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ACYL-HOMOSERINE LACTONE ACYLASE PVDQ	A	709	5493	0
2	Ligand	ACYL-HOMOSERINE LACTONE ACYLASE PVDQ	A	1	0	47
3	Water			152	0	152
total				862	5493	199

Proteins

Unit 1

ALA 1 ASN 2 ALA 3 ILE 4 ALA 5 VAL 6 GLY 7 SER 8 GLU 9 ARG 10 SER 11 ALA 12 ASP 13 GLY 14 LYS 15 GLY 16 MET 17 LEU 18 LEU 19 ALA 20 ASN 21 PRO 22 HIS 23 PHE 24 PRO 25 TRP 26 ASN 27 GLY 28 ALA 29 MET 30 ARG 31 PHE 32 TYR 33 GLN 34 MET 35 HIS 36 LEU 37 THR 38 ILE 39 PRO 40 GLY 41 ARG 42 LEU 43 ASP 44 VAL 45 MET 46 GLY 47 ALA 48 SER 49 LEU 50 PRO 51 GLY 52 LEU 53 PRO 54 VAL 55 VAL 56 ASN 57 ILE 58 GLY 59 PHE 60 SER 61 ARG 62 HIS 63 LEU 64 ALA 65 TRP 66 THR 67 HIS 68 THR 69 VAL 70 ASP 71 THR 72 SER 73 SER 74 HIS 75 PHE 76 THR 77 LEU 78 TYR 79 ARG 80 LEU 81 ALA 82 LEU 83 ASP 84 PRO 85 LYS 86 ASP 87 PRO 88 ARG 89 ARG 90 TYR 91 LEU 92 VAL 93 ASP 94 GLY 95 ARG 96 SER 97 LEU 98 PRO 99 LEU 100 GLU 101 GLU 102 LYS 103 SER 104 VAL 105 ALA 106 ILE 107 GLU 108 VAL 109 ARG 110 GLY 111 ALA 112 ASP 113 GLY 114 LYS 115 LEU 116 SER 117 ARG 118 VAL 119 GLU 120 HIS 121 LYS 122 VAL 123 TYR 124 GLN 125 SER 126 ILE 127 TYR 128 GLY 129 PRO 130 LEU 131 VAL 132 VAL 133 TRP 134 PRO 135 GLY 136 LYS 137 LEU 138 ASP 139 TRP 140 ASN 141 ARG 142 SER 143 GLU 144 ALA 145 TYR 146 ALA 147 LEU 148 ARG 149 ASP 150 ALA 151 ASN 152 LEU 153 GLU 154 ASN 155 THR 156 ARG 157 VAL 158 LEU 159 GLN 160 GLN 161 TRP 162 TYR 163 SER 164 ILE 165 ASN 166 GLN 167 ALA 168 SER 169 ASP 170 VAL 171 ALA 172 ASP 173 LEU 174 ARG 175 ARG 176 ARG 177 VAL 178 GLU 179 ALA 180 LEU 181 GLN 182 GLY 183 ILE 184 PRO 185 TRP 186 VAL 187 ASN 188 THR 189 LEU 190 ALA 191 ALA 192 ASP 193 GLU 194 GLN 195 GLY 196 ASN 197 ALA 198 LEU 199 TYR 200 MET 201 ASN 202 GLN 203 SER 204 VAL 205 VAL 206 PRO 207 TYR 208 LEU 209 LYS 210 PRO 211 GLU 212 LEU 213 ILE 214 PRO 215 ALA 216 CYS 217 ALA 218 ILE 219 PRO 220 GLN 221 LEU 222 VAL 223 ALA 224 GLU 225 GLY 226 LEU 227 PRO 228 ALA 229 LEU 230 GLN 231 GLY 232 GLN 233 ASP 234 SER 235 ARG 236 CYS 237 ALA 238 TRP 239 SER 240 ARG 241 ASP 242 PRO 243 ALA 244 ALA 245 ALA 246 GLN 247 ALA 248 GLY 249 ILE 250 THR 251 PRO 252 ALA 253 ALA 254 GLN 255 LEU 256 PRO 257 VAL 258 LEU 259 LEU 260 ARG 261 ARG 262 ASP 263 PHE 264 VAL 265 GLN 266 ASN 267 SER 268 ASP 269 ASP 270 SER 271 ALA 272 TRP 273 LEU 274 THR 275 ASN 276 PRO 277 ALA 278 SER 279 PRO 280 LEU 281 GLN 282 GLY 283 PHE 284 SER 285 PRO 286 LEU 287 VAL 288 SER 289 GLN 290 GLU 291 LYS 292 PRO 293 ILE 294 GLY 295 PRO 296 ARG 297 ALA 298 ARG 299 TYR 300 ALA 301 LEU 302 SER 303 ARG 304 LEU 305 GLN 306 GLY 307 LYS 308 GLN 309 PRO 310 LEU 311 GLU 312 ALA 313 LYS 314 THR 315 LEU 316 GLU 317 GLU 318 MET 319 VAL 320 THR 321 ALA 322 ASN 323 HIS 324 VAL 325 PHE 326 SER 327 ALA 328 ASP 329 GLN 330 VAL 331 LEU 332 PRO 333 ASP 334 LEU 335 LEU 336 ARG 337 LEU 338 CYS 339 ARG 340 ASP 341 ASN 342 GLN 343 GLY 344 GLU 345 LYS 346 SER 347 LEU 348 ALA 349 ARG 350 ALA 351 CYS 352 ALA 353 ALA 354 LEU 355 ALA 356 GLN 357 TRP 358 ASP 359 ARG 360 GLY 361 ALA 362 ASN 363 LEU 364 ASP 365 SER 366 GLY 367 SER 368 GLY 369 PHE 370 VAL 371 TYR 372 PHE 373 GLN 374 ARG 375 PHE 376 MET 377 GLN 378 ARG 379 PHE 380 ALA 381 GLU 382 LEU 383 ASP 384 GLY 385 ALA 386 TRP 387 LYS 388 GLU 389 PRO 390 PHE 391 ASP 392 ALA 393 GLN 394 ARG 395 PRO 396 LEU 397 ASP 398 THR 399 PRO 400 GLN 401 GLY 402 ILE 403 ALA 404 LEU 405 ASP 406 ARG 407 PRO 408 GLN 409 VAL 410 ALA 411 THR 412 GLN 413 VAL 414 ARG 415 GLN 416 ALA 417 LEU 418 ALA 419 ASP 420 ALA 421 ALA 422 ALA 423 GLU 424 VAL 425 GLU 426 LYS 427 SER 428 GLY 429 ILE 430 PRO 431 ASP 432 GLY 433 ALA 434 ARG 435 TRP 436 GLY 437 ASP 438 LEU 439 GLN 440 VAL 441 SER 442 THR 443 ARG 444 GLY 445 GLN 446 GLU 447 ARG 448 ILE 449 ALA 450 ILE 451 PRO 452 GLY 453 GLY 454 ASP 455 GLY 456 HIS 457 PHE 458 GLY 459 VAL 460 TYR 461 ASN 462 ALA 463 ILE 464 GLN 465 SER 466 VAL 467 ARG 468 LYS 469 GLY 470 ASP 471 HIS 472 LEU 473 GLU 474 VAL 475 VAL 476 GLY 477 GLY 478 THR 479 SER 480 TYR 481 ILE 482 GLN 483 LEU 484 VAL 485 THR 486 PHE 487 PRO 488 GLU 489 GLU 490 GLY 491 PRO 492 LYS 493 ALA 494 ARG 495 GLY 496 LEU 497 LEU 498 ALA 499 PHE 500 SER 501 GLN 502 SER 503 SER 504 ASP 505 PRO 506 ARG 507 SER 508 PRO 509 HIS 510 TYR 511 ARG 512 ASP 513 GLN 514 THR 515 GLU 516 LEU 517 PHE 518 SER 519 ARG 520 GLN 521 GLN 522 TRP 523 GLN 524 THR 525 LEU 526 PRO 527 PHE 528 SER 529 ASP 530 ARG 531 GLN 532 ILE 533 ASP 534 ALA 535 ASP 536 PRO 537 GLN 538 LEU 539 GLN 540 ARG 541 LEU 542 SER 543 ILE 544 ARG 545 GLU 546 GLY 547 GLY 556 LEU 557 ALA 558 ALA 559 ASP 560 ILE 561 ARG 562 TRP 563 THR 564 ALA 565 TYR 566 GLY 567 VAL 568 PRO 569 HIS 570 ILE 571 ARG 572 ALA 573 LYS 574 ASP 575 GLU 576 ARG 577 GLY 578 LEU 579 GLY 580 TYR 581 GLY 582 ILE 583 GLY 584 TYR 585 ALA 586 TYR 587 ALA 588 ARG 589 ASP 590 ASN 591 ALA 592 CYS 593 LEU 594 LEU 595 ALA 596 GLU 597 GLU 598 ILE 599 VAL 600 THR 601 ALA 602 ARG 603 GLY 604 GLU 605 ARG 606 ALA 607 ARG 608 TYR 609 PHE 610 GLY 611 SER 612 GLU 613 GLY 614 LYS 615 SER 616 SER 617 ALA 618 GLU 619 LEU 620 ASP 621 ASN 622 LEU 623 PRO 624 SER 625 ASP 626 ILE 627 PHE 628 TYR 629 ALA 630 TRP 631 LEU 632 ASN 633 GLN 634 PRO 635 GLU 636 ALA 637 LEU 638 GLN 639 ALA 640 PHE 641 TRP 642 GLN 643 ALA 644 GLN 645 THR 646 PRO 647 ALA 648 VAL 649 ARG 650 GLN 651 LEU 652 LEU 653 GLU 654 GLY 655 TYR 656 ALA 657 ALA 658 GLY 659 PHE 660 ASN 661 ARG 662 PHE 663 LEU 664 ARG 665 GLU 666 ALA 667 ASP 668 GLY 669 LYS 670 THR 671 THR 672 SER 673 CYS 674 LEU 675 GLY 676 GLN 677 PRO 678 TRP 679 LEU 680 ARG 681 ALA 682 ILE 683 ALA 684 THR 685 ASP 686 ASP 687 LEU 688 LEU 689 ARG 690 LEU 691 THR 692 ARG 693 ARG 694 LEU 695 LEU 696 VAL 697 GLU 698 GLY 699 GLY 700 VAL 701 GLY 702 GLN 703 PHE 704 ALA 705 ASP 706 ALA 707 LEU 708 VAL 709 ALA 710 ALA 711 ALA 712 PRO 713 PRO 714 GLY 715 ALA 716 GLU 717

Ligands

Unit 2

83M 801