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Sequence, Chains, Asymmetric and Biological Units

Title DNA POLYMERASE BETA CRYSTALLIZED IN PEG 400
Keywords DNA POLYMERASE, LYASE, DNA COMPLEX, TRANSFERASE, LYASE-DNA C
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5U8G     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE BETA  A 315 2464 0
2  Other macromolecule   DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP 3')  T 16 321 0
3  Other macromolecule   DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3')  P 10 203 0
4  Other macromolecule   DNA (5'-D(*GP*TP*CP*GP*G)-3')  D 5 102 0
5  Ligand   DNA POLYMERASE BETA  A 3 0 3
6 Water     266 0 266
total       615 3090 269

Proteins
Unit 1 LEU11 ASN12 GLY13 GLY14 ILE15 THR16 ASP17 MET18 LEU19 THR20 GLU21 LEU22 ALA23 ASN24 PHE25 GLU26 LYS27 ASN28 VAL29 SER30 GLN31 ALA32 ILE33 HIS34 LYS35 TYR36 ASN37 ALA38 TYR39 ARG40 LYS41 ALA42 ALA43 SER44 VAL45 ILE46 ALA47 LYS48 TYR49 PRO50 HIS51 LYS52 ILE53 LYS54 SER55 GLY56 ALA57 GLU58 ALA59 LYS60 LYS61 LEU62 PRO63 GLY64 VAL65 GLY66 THR67 LYS68 ILE69 ALA70 GLU71 LYS72 ILE73 ASP74 GLU75 PHE76 LEU77 ALA78 THR79 GLY80 LYS81 LEU82 ARG83 LYS84 LEU85 GLU86 LYS87 ILE88 ARG89 GLN90 ASP91 ASP92 THR93 SER94 SER95 SER96 ILE97 ASN98 PHE99 LEU100 THR101 ARG102 VAL103 SER104 GLY105 ILE106 GLY107 PRO108 SER109 ALA110 ALA111 ARG112 LYS113 PHE114 VAL115 ASP116 GLU117 GLY118 ILE119 LYS120 THR121 LEU122 GLU123 ASP124 LEU125 ARG126 LYS127 ASN128 GLU129 ASP130 LYS131 LEU132 ASN133 HIS134 HIS135 GLN136 ARG137 ILE138 GLY139 LEU140 LYS141 TYR142 PHE143 GLY144 ASP145 PHE146 GLU147 LYS148 ARG149 ILE150 PRO151 ARG152 GLU153 GLU154 MET155 LEU156 GLN157 MET158 GLN159 ASP160 ILE161 VAL162 LEU163 ASN164 GLU165 VAL166 LYS167 LYS168 VAL169 ASP170 SER171 GLU172 TYR173 ILE174 ALA175 THR176 VAL177 CYS178 GLY179 SER180 PHE181 ARG182 ARG183 GLY184 ALA185 GLU186 SER187 SER188 GLY189 ASP190 MET191 ASP192 VAL193 LEU194 LEU195 THR196 HIS197 PRO198 SER199 PHE200 THR201 SER202 PRO208 LYS209 LEU210 LEU211 HIS212 GLN213 VAL214 VAL215 GLU216 GLN217 LEU218 GLN219 LYS220 VAL221 HIS222 PHE223 ILE224 THR225 ASP226 THR227 LEU228 SER229 LYS230 GLY231 GLU232 THR233 LYS234 PHE235 MET236 GLY237 VAL238 CYS239 GLN240 LEU241 PRO242 SER243 GLU249 TYR250 PRO251 HIS252 ARG253 ARG254 ILE255 ASP256 ILE257 ARG258 LEU259 ILE260 PRO261 LYS262 ASP263 GLN264 TYR265 TYR266 CYS267 GLY268 VAL269 LEU270 TYR271 PHE272 THR273 GLY274 SER275 ASP276 ILE277 PHE278 ASN279 LYS280 ASN281 MET282 ARG283 ALA284 HIS285 ALA286 LEU287 GLU288 LYS289 GLY290 PHE291 THR292 ILE293 ASN294 GLU295 TYR296 THR297 ILE298 ARG299 PRO300 LEU301 GLY302 VAL303 THR304 GLY305 VAL306 ALA307 GLY308 GLU309 PRO310 LEU311 PRO312 VAL313 ASP314 SER315 GLU316 LYS317 ASP318 ILE319 PHE320 ASP321 TYR322 ILE323 GLN324 TRP325 LYS326 TYR327 ARG328 GLU329 PRO330 LYS331 ASP332 ARG333 SER334 GLU335

Other macromolecules
Unit 2 DC1 DC2 DG3 DA4 DC5 DA6 DG7 DC8 DG9 DC10 DA11 DT12 DC13 DA14 DG15 DC16
Unit 3 DG1 DC2 DT3 DG4 DA5 DT6 DG7 DC8 DG9 DC10
Unit 4 DG1 DT2 DC3 DG4 DG5

Ligands
Unit 5 NA401 NA402 CL403

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany