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Sequence, Chains, Asymmetric and Biological Units

Title IDENTIFICATION OF A NEW CLASS OF POTENT CDC7 INHIBITORS DESI PUTATIVE PHARMACOPHORE MODEL: SYNTHESIS AND BIOLOGICAL EVAL 2,3-DIHYDROTHIENO[3,2-D]PYRIMIDIN-4(1H)-ONES
Keywords SERINE/THREONINE KINASE, APO-PROTEIN, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5U7Q     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RHO-ASSOCIATED PROTEIN KINASE 2  A 388 3147 0
2  Protein   RHO-ASSOCIATED PROTEIN KINASE 2  B 385 3121 0
3  Protein   RHO-ASSOCIATED PROTEIN KINASE 2  C 390 3156 0
4  Protein   RHO-ASSOCIATED PROTEIN KINASE 2  D 383 3106 0
5 Water     10 0 10
total       1556 12530 10
Proteins
Unit 1 SER25 ARG26 GLN27 ARG28 LYS29 LEU30 GLU31 ALA32 LEU33 ILE34 ARG35 ASP36 PRO37 ARG38 SER39 PRO40 ILE41 ASN42 VAL43 GLU44 SER45 LEU46 LEU47 ASP48 GLY49 LEU50 ASN51 SER52 LEU53 VAL54 LEU55 ASP56 LEU57 ASP58 PHE59 PRO60 ALA61 LEU62 ARG63 LYS64 ASN65 LYS66 ASN67 ILE68 ASP69 ASN70 PHE71 LEU72 ASN73 ARG74 TYR75 GLU76 LYS77 ILE78 VAL79 LYS80 LYS81 ILE82 ARG83 GLY84 LEU85 GLN86 MET87 LYS88 ALA89 GLU90 ASP91 TYR92 ASP93 VAL94 VAL95 LYS96 VAL97 ILE98 GLY99 ARG100 GLY101 ALA102 PHE103 GLY104 GLU105 VAL106 GLN107 LEU108 VAL109 ARG110 HIS111 LYS112 ALA113 SER114 GLN115 LYS116 VAL117 TYR118 ALA119 MET120 LYS121 LEU122 LEU123 SER124 LYS125 PHE126 GLU127 MET128 ILE129 LYS130 ARG131 SER132 ASP133 SER134 ALA135 PHE136 PHE137 TRP138 GLU139 GLU140 ARG141 ASP142 ILE143 MET144 ALA145 PHE146 ALA147 ASN148 SER149 PRO150 TRP151 VAL152 VAL153 GLN154 LEU155 PHE156 TYR157 ALA158 PHE159 GLN160 ASP161 ASP162 ARG163 TYR164 LEU165 TYR166 MET167 VAL168 MET169 GLU170 TYR171 MET172 PRO173 GLY174 GLY175 ASP176 LEU177 VAL178 ASN179 LEU180 MET181 SER182 ASN183 TYR184 ASP185 VAL186 PRO187 GLU188 LYS189 TRP190 ALA191 LYS192 PHE193 TYR194 THR195 ALA196 GLU197 VAL198 VAL199 LEU200 ALA201 LEU202 ASP203 ALA204 ILE205 HIS206 SER207 MET208 GLY209 LEU210 ILE211 HIS212 ARG213 ASP214 VAL215 LYS216 PRO217 ASP218 ASN219 MET220 LEU221 LEU222 ASP223 LYS224 HIS225 GLY226 HIS227 LEU228 LYS229 LEU230 ALA231 ASP232 PHE233 GLY234 THR235 CYS236 MET237 LYS238 MET239 ASP240 GLU241 THR242 GLY243 MET244 VAL245 HIS246 CYS247 ASP248 THR249 ALA250 VAL251 GLY252 THR253 PRO254 ASP255 TYR256 ILE257 SER258 PRO259 GLU260 VAL261 LEU262 LYS263 SER264 GLN265 GLY266 GLY267 ASP268 GLY269 PHE270 TYR271 GLY272 ARG273 GLU274 CYS275 ASP276 TRP277 TRP278 SER279 VAL280 GLY281 VAL282 PHE283 LEU284 TYR285 GLU286 MET287 LEU288 VAL289 GLY290 ASP291 THR292 PRO293 PHE294 TYR295 ALA296 ASP297 SER298 LEU299 VAL300 GLY301 THR302 TYR303 SER304 LYS305 ILE306 MET307 ASP308 HIS309 LYS310 ASN311 SER312 LEU313 CYS314 PHE315 PRO316 GLU317 ASP318 ALA319 GLU320 ILE321 SER322 LYS323 HIS324 ALA325 LYS326 ASN327 LEU328 ILE329 CYS330 ALA331 PHE332 LEU333 THR334 ASP335 ARG336 GLU337 VAL338 ARG339 LEU340 GLY341 ARG342 ASN343 GLY344 VAL345 GLU346 GLU347 ILE348 ARG349 GLN350 HIS351 PRO352 PHE353 PHE354 LYS355 ASN356 ASP357 GLN358 TRP359 HIS360 TRP361 ASP362 ASN363 ILE364 ARG365 GLU366 THR367 ALA368 ALA369 PRO370 VAL371 VAL372 PRO373 GLU374 LEU375 SER376 SER377 ASP378 ILE379 ASP380 SER381 SER382 ASN383 PHE384 ASP385 ASP386 ILE387 GLU388 VAL394 GLU395 THR396 PHE397 PRO398 ILE399 PRO400 LYS401 ALA402 PHE403 VAL404 GLY405 ASN406 GLN407 LEU408 PRO409 PHE410 ILE411 GLY412 PHE413 THR414 TYR415 TYR416 ARG417
Unit 2 ARG28 LYS29 LEU30 GLU31 ALA32 LEU33 ILE34 ARG35 ASP36 PRO37 ARG38 SER39 PRO40 ILE41 ASN42 VAL43 GLU44 SER45 LEU46 LEU47 ASP48 GLY49 LEU50 ASN51 SER52 LEU53 VAL54 LEU55 ASP56 LEU57 ASP58 PHE59 PRO60 ALA61 LEU62 ARG63 LYS64 ASN65 LYS66 ASN67 ILE68 ASP69 ASN70 PHE71 LEU72 ASN73 ARG74 TYR75 GLU76 LYS77 ILE78 VAL79 LYS80 LYS81 ILE82 ARG83 GLY84 LEU85 GLN86 MET87 LYS88 ALA89 GLU90 ASP91 TYR92 ASP93 VAL94 VAL95 LYS96 VAL97 ILE98 GLY99 ARG100 GLY101 ALA102 PHE103 GLY104 GLU105 VAL106 GLN107 LEU108 VAL109 ARG110 HIS111 LYS112 ALA113 SER114 GLN115 LYS116 VAL117 TYR118 ALA119 MET120 LYS121 LEU122 LEU123 SER124 LYS125 PHE126 GLU127 MET128 ILE129 LYS130 ARG131 SER132 ASP133 SER134 ALA135 PHE136 PHE137 TRP138 GLU139 GLU140 ARG141 ASP142 ILE143 MET144 ALA145 PHE146 ALA147 ASN148 SER149 PRO150 TRP151 VAL152 VAL153 GLN154 LEU155 PHE156 TYR157 ALA158 PHE159 GLN160 ASP161 ASP162 ARG163 TYR164 LEU165 TYR166 MET167 VAL168 MET169 GLU170 TYR171 MET172 PRO173 GLY174 GLY175 ASP176 LEU177 VAL178 ASN179 LEU180 MET181 SER182 ASN183 TYR184 ASP185 VAL186 PRO187 GLU188 LYS189 TRP190 ALA191 LYS192 PHE193 TYR194 THR195 ALA196 GLU197 VAL198 VAL199 LEU200 ALA201 LEU202 ASP203 ALA204 ILE205 HIS206 SER207 MET208 GLY209 LEU210 ILE211 HIS212 ARG213 ASP214 VAL215 LYS216 PRO217 ASP218 ASN219 MET220 LEU221 LEU222 ASP223 LYS224 HIS225 GLY226 HIS227 LEU228 LYS229 LEU230 ALA231 ASP232 PHE233 GLY234 THR235 CYS236 MET237 LYS238 MET239 ASP240 GLU241 THR242 GLY243 MET244 VAL245 HIS246 CYS247 ASP248 THR249 ALA250 VAL251 GLY252 THR253 PRO254 ASP255 TYR256 ILE257 SER258 PRO259 GLU260 VAL261 LEU262 LYS263 SER264 GLN265 GLY266 GLY267 ASP268 GLY269 PHE270 TYR271 GLY272 ARG273 GLU274 CYS275 ASP276 TRP277 TRP278 SER279 VAL280 GLY281 VAL282 PHE283 LEU284 TYR285 GLU286 MET287 LEU288 VAL289 GLY290 ASP291 THR292 PRO293 PHE294 TYR295 ALA296 ASP297 SER298 LEU299 VAL300 GLY301 THR302 TYR303 SER304 LYS305 ILE306 MET307 ASP308 HIS309 LYS310 ASN311 SER312 LEU313 CYS314 PHE315 PRO316 GLU317 ASP318 ALA319 GLU320 ILE321 SER322 LYS323 HIS324 ALA325 LYS326 ASN327 LEU328 ILE329 CYS330 ALA331 PHE332 LEU333 THR334 ASP335 ARG336 GLU337 VAL338 ARG339 LEU340 GLY341 ARG342 ASN343 GLY344 VAL345 GLU346 GLU347 ILE348 ARG349 GLN350 HIS351 PRO352 PHE353 PHE354 LYS355 ASN356 ASP357 GLN358 TRP359 HIS360 TRP361 ASP362 ASN363 ILE364 ARG365 GLU366 THR367 ALA368 ALA369 PRO370 VAL371 VAL372 PRO373 GLU374 LEU375 SER376 SER377 ASP378 ILE379 ASP380 SER381 SER382 ASN383 PHE384 ASP385 ASP386 ILE387 GLU388 VAL394 GLU395 THR396 PHE397 PRO398 ILE399 PRO400 LYS401 ALA402 PHE403 VAL404 GLY405 ASN406 GLN407 LEU408 PRO409 PHE410 ILE411 GLY412 PHE413 THR414 TYR415 TYR416 ARG417
Unit 3 GLY23 ALA24 SER25 ARG26 GLN27 ARG28 LYS29 LEU30 GLU31 ALA32 LEU33 ILE34 ARG35 ASP36 PRO37 ARG38 SER39 PRO40 ILE41 ASN42 VAL43 GLU44 SER45 LEU46 LEU47 ASP48 GLY49 LEU50 ASN51 SER52 LEU53 VAL54 LEU55 ASP56 LEU57 ASP58 PHE59 PRO60 ALA61 LEU62 ARG63 LYS64 ASN65 LYS66 ASN67 ILE68 ASP69 ASN70 PHE71 LEU72 ASN73 ARG74 TYR75 GLU76 LYS77 ILE78 VAL79 LYS80 LYS81 ILE82 ARG83 GLY84 LEU85 GLN86 MET87 LYS88 ALA89 GLU90 ASP91 TYR92 ASP93 VAL94 VAL95 LYS96 VAL97 ILE98 GLY99 ARG100 GLY101 ALA102 PHE103 GLY104 GLU105 VAL106 GLN107 LEU108 VAL109 ARG110 HIS111 LYS112 ALA113 SER114 GLN115 LYS116 VAL117 TYR118 ALA119 MET120 LYS121 LEU122 LEU123 SER124 LYS125 PHE126 GLU127 MET128 ILE129 LYS130 ARG131 SER132 ASP133 SER134 ALA135 PHE136 PHE137 TRP138 GLU139 GLU140 ARG141 ASP142 ILE143 MET144 ALA145 PHE146 ALA147 ASN148 SER149 PRO150 TRP151 VAL152 VAL153 GLN154 LEU155 PHE156 TYR157 ALA158 PHE159 GLN160 ASP161 ASP162 ARG163 TYR164 LEU165 TYR166 MET167 VAL168 MET169 GLU170 TYR171 MET172 PRO173 GLY174 GLY175 ASP176 LEU177 VAL178 ASN179 LEU180 MET181 SER182 ASN183 TYR184 ASP185 VAL186 PRO187 GLU188 LYS189 TRP190 ALA191 LYS192 PHE193 TYR194 THR195 ALA196 GLU197 VAL198 VAL199 LEU200 ALA201 LEU202 ASP203 ALA204 ILE205 HIS206 SER207 MET208 GLY209 LEU210 ILE211 HIS212 ARG213 ASP214 VAL215 LYS216 PRO217 ASP218 ASN219 MET220 LEU221 LEU222 ASP223 LYS224 HIS225 GLY226 HIS227 LEU228 LYS229 LEU230 ALA231 ASP232 PHE233 GLY234 THR235 CYS236 MET237 LYS238 MET239 ASP240 GLU241 THR242 GLY243 MET244 VAL245 HIS246 CYS247 ASP248 THR249 ALA250 VAL251 GLY252 THR253 PRO254 ASP255 TYR256 ILE257 SER258 PRO259 GLU260 VAL261 LEU262 LYS263 SER264 GLN265 GLY266 GLY267 ASP268 GLY269 PHE270 TYR271 GLY272 ARG273 GLU274 CYS275 ASP276 TRP277 TRP278 SER279 VAL280 GLY281 VAL282 PHE283 LEU284 TYR285 GLU286 MET287 LEU288 VAL289 GLY290 ASP291 THR292 PRO293 PHE294 TYR295 ALA296 ASP297 SER298 LEU299 VAL300 GLY301 THR302 TYR303 SER304 LYS305 ILE306 MET307 ASP308 HIS309 LYS310 ASN311 SER312 LEU313 CYS314 PHE315 PRO316 GLU317 ASP318 ALA319 GLU320 ILE321 SER322 LYS323 HIS324 ALA325 LYS326 ASN327 LEU328 ILE329 CYS330 ALA331 PHE332 LEU333 THR334 ASP335 ARG336 GLU337 VAL338 ARG339 LEU340 GLY341 ARG342 ASN343 GLY344 VAL345 GLU346 GLU347 ILE348 ARG349 GLN350 HIS351 PRO352 PHE353 PHE354 LYS355 ASN356 ASP357 GLN358 TRP359 HIS360 TRP361 ASP362 ASN363 ILE364 ARG365 GLU366 THR367 ALA368 ALA369 PRO370 VAL371 VAL372 PRO373 GLU374 LEU375 SER376 SER377 ASP378 ILE379 ASP380 SER381 SER382 ASN383 PHE384 ASP385 ASP386 ILE387 GLU388 VAL394 GLU395 THR396 PHE397 PRO398 ILE399 PRO400 LYS401 ALA402 PHE403 VAL404 GLY405 ASN406 GLN407 LEU408 PRO409 PHE410 ILE411 GLY412 PHE413 THR414 TYR415 TYR416 ARG417
Unit 4 GLN27 ARG28 LYS29 LEU30 GLU31 ALA32 LEU33 ILE34 ARG35 ASP36 PRO37 ARG38 SER39 PRO40 ILE41 ASN42 VAL43 GLU44 SER45 LEU46 LEU47 ASP48 GLY49 LEU50 ASN51 SER52 LEU53 VAL54 LEU55 ASP56 LEU57 ASP58 PHE59 PRO60 ALA61 LEU62 ARG63 LYS64 ASN65 LYS66 ASN67 ILE68 ASP69 ASN70 PHE71 LEU72 ASN73 ARG74 TYR75 GLU76 LYS77 ILE78 VAL79 LYS80 LYS81 ILE82 ARG83 GLY84 LEU85 GLN86 MET87 LYS88 ALA89 GLU90 ASP91 TYR92 ASP93 VAL94 VAL95 LYS96 VAL97 ILE98 GLY99 ARG100 GLY101 ALA102 PHE103 GLY104 GLU105 VAL106 GLN107 LEU108 VAL109 ARG110 HIS111 LYS112 ALA113 SER114 GLN115 LYS116 VAL117 TYR118 ALA119 MET120 LYS121 LEU122 LEU123 SER124 LYS125 PHE126 GLU127 MET128 ILE129 LYS130 ARG131 SER132 ASP133 SER134 ALA135 PHE136 PHE137 TRP138 GLU139 GLU140 ARG141 ASP142 ILE143 MET144 ALA145 PHE146 ALA147 ASN148 SER149 PRO150 TRP151 VAL152 VAL153 GLN154 LEU155 PHE156 TYR157 ALA158 PHE159 GLN160 ASP161 ASP162 ARG163 TYR164 LEU165 TYR166 MET167 VAL168 MET169 GLU170 TYR171 MET172 PRO173 GLY174 GLY175 ASP176 LEU177 VAL178 ASN179 LEU180 MET181 SER182 ASN183 TYR184 ASP185 VAL186 PRO187 GLU188 LYS189 TRP190 ALA191 LYS192 PHE193 TYR194 THR195 ALA196 GLU197 VAL198 VAL199 LEU200 ALA201 LEU202 ASP203 ALA204 ILE205 HIS206 SER207 MET208 GLY209 LEU210 ILE211 HIS212 ARG213 ASP214 VAL215 LYS216 PRO217 ASP218 ASN219 MET220 LEU221 LEU222 ASP223 LYS224 HIS225 GLY226 HIS227 LEU228 LYS229 LEU230 ALA231 ASP232 PHE233 GLY234 THR235 CYS236 MET237 LYS238 MET239 ASP240 GLU241 THR242 GLY243 MET244 VAL245 THR249 ALA250 VAL251 GLY252 THR253 PRO254 ASP255 TYR256 ILE257 SER258 PRO259 GLU260 VAL261 LEU262 LYS263 SER264 GLN265 GLY266 GLY267 ASP268 GLY269 PHE270 TYR271 GLY272 ARG273 GLU274 CYS275 ASP276 TRP277 TRP278 SER279 VAL280 GLY281 VAL282 PHE283 LEU284 TYR285 GLU286 MET287 LEU288 VAL289 GLY290 ASP291 THR292 PRO293 PHE294 TYR295 ALA296 ASP297 SER298 LEU299 VAL300 GLY301 THR302 TYR303 SER304 LYS305 ILE306 MET307 ASP308 HIS309 LYS310 ASN311 SER312 LEU313 CYS314 PHE315 PRO316 GLU317 ASP318 ALA319 GLU320 ILE321 SER322 LYS323 HIS324 ALA325 LYS326 ASN327 LEU328 ILE329 CYS330 ALA331 PHE332 LEU333 THR334 ASP335 ARG336 GLU337 VAL338 ARG339 LEU340 GLY341 ARG342 ASN343 GLY344 VAL345 GLU346 GLU347 ILE348 ARG349 GLN350 HIS351 PRO352 PHE353 PHE354 LYS355 ASN356 ASP357 GLN358 TRP359 HIS360 TRP361 ASP362 ASN363 ILE364 ARG365 GLU366 THR367 ALA368 ALA369 PRO370 VAL371 VAL372 PRO373 GLU374 LEU375 SER376 SER377 ASP378 ILE379 ASP380 SER381 SER382 ASN383 PHE384 ASP385 ASP386 ILE387 GLU388 VAL394 GLU395 THR396 PHE397 PRO398 ILE399 PRO400 LYS401 ALA402 PHE403 VAL404 GLY405 ASN406 GLN407 LEU408 PRO409 PHE410 ILE411 GLY412 PHE413 THR414 TYR415 TYR416 ARG417
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany