Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AACC2C1-SGRNA-8MER SUBSTRATE DNA TERNAR
Keywords TYPE V CRISPR-CAS ENDONCULEASE: C2C1: STRUCTURE: BINARY COMP SGRNA: TERNARY COMPLEX WITH ADDED DNA: RUVC CATALYTIC POCKE SEQUENCE-SPECIFIC PAM RECOGNITION: GENOME EDITING TOOL, HYD DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5U31     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CRISPR-ASSOCIATED ENDONUCLEASE C2C1  A 1085 8696 168
2  RNA    B 99 2127 0
3  Other macromolecule   TARGET DNA STRAND  C 28 565 0
4  Other macromolecule   NON-TARGET DNA STRAND  D 8 162 0
5  Other macromolecule   NON-TARGET DNA STRAND  E 7 143 0
6  Ligand   CRISPR-ASSOCIATED ENDONUCLEASE C2C1  A 2 0 10
total       1229 11693 178
Proteins
Unit 1 SER0 MSE1 ALA2 VAL3 LYS4 SER5 ILE6 LYS7 VAL8 LYS9 LEU10 ARG11 LEU12 ASP13 ASP14 MSE15 PRO16 GLU17 ILE18 ARG19 ALA20 GLY21 LEU22 TRP23 LYS24 LEU25 HIS26 LYS27 GLU28 VAL29 ASN30 ALA31 GLY32 VAL33 ARG34 TYR35 TYR36 THR37 GLU38 TRP39 LEU40 SER41 LEU42 LEU43 ARG44 GLN45 GLU46 ASN47 LEU48 TYR49 ARG50 ARG51 SER52 PRO53 ASN54 GLY55 ASP56 GLY57 GLU58 GLN59 GLU60 CYS61 ASP62 LYS63 THR64 ALA65 GLU66 GLU67 CYS68 LYS69 ALA70 GLU71 LEU72 LEU73 GLU74 ARG75 LEU76 ARG77 ALA78 ARG79 GLN80 VAL81 GLU82 ASN83 GLY84 HIS85 ARG86 GLY87 PRO88 ALA89 GLY90 SER91 ASP92 ASP93 GLU94 LEU95 LEU96 GLN97 LEU98 ALA99 ARG100 GLN101 LEU102 TYR103 GLU104 LEU105 LEU106 VAL107 PRO108 GLN109 ALA110 ILE111 GLY112 ALA113 LYS114 GLY115 ASP116 ALA117 GLN118 GLN119 ILE120 ALA121 ARG122 LYS123 PHE124 LEU125 SER126 PRO127 LEU128 ALA129 ASP130 LYS131 ASP132 ALA133 VAL134 GLY135 GLY136 LEU137 GLY138 ILE139 ALA140 LYS141 ALA142 GLY143 ASN144 LYS145 PRO146 ARG147 TRP148 VAL149 ARG150 MSE151 ARG152 GLU153 ALA154 GLY155 GLU156 TRP159 GLU160 GLU161 GLU162 LYS163 GLU164 LYS165 ALA166 GLU167 THR168 ARG169 LYS170 SER171 ALA172 ASP173 ARG174 THR175 ALA176 ASP177 VAL178 LEU179 ARG180 ALA181 LEU182 ALA183 ASP184 PHE185 GLY186 LEU187 LYS188 PRO189 LEU190 MSE191 ARG192 VAL193 TYR194 THR195 ASP196 SER197 GLU198 MSE199 SER200 SER201 VAL202 GLU203 TRP204 LYS205 PRO206 LEU207 ARG208 LYS209 GLY210 GLN211 ALA212 VAL213 ARG214 THR215 TRP216 ASP217 ARG218 ASP219 MSE220 PHE221 GLN222 GLN223 ALA224 ILE225 GLU226 ARG227 MSE228 MSE229 SER230 TRP231 GLU232 SER233 TRP234 ASN235 GLN236 ARG237 VAL238 GLY239 GLN240 GLU241 TYR242 ALA243 LYS244 LEU245 VAL246 GLU247 GLN248 LYS249 ASN250 ARG251 PHE252 GLU253 GLN254 LYS255 ASN256 PHE257 VAL258 GLY259 GLN260 GLU261 HIS262 LEU263 VAL264 HIS265 LEU266 VAL267 ASN268 GLN269 LEU270 GLN271 GLN272 ASP273 MSE274 LYS275 GLU276 ALA277 SER278 PRO279 GLY280 LEU281 GLU282 SER283 LYS284 GLU285 GLN286 THR287 ALA288 HIS289 TYR290 VAL291 THR292 GLY293 ARG294 ALA295 LEU296 ARG297 GLY298 SER299 ASP300 LYS301 VAL302 PHE303 GLU304 LYS305 TRP306 GLY307 LYS308 LEU309 ALA310 PRO311 ASP312 ALA313 PRO314 PHE315 ASP316 LEU317 TYR318 ASP319 ALA320 GLU321 ILE322 LYS323 ASN324 VAL325 GLN326 ARG327 ARG328 ASN329 THR330 ARG331 ARG332 PHE333 GLY334 SER335 HIS336 ASP337 LEU338 PHE339 ALA340 LYS341 LEU342 ALA343 GLU344 PRO345 GLU346 TYR347 GLN348 ALA349 LEU350 TRP351 ARG352 GLU353 ASP354 ALA355 SER356 PHE357 LEU358 THR359 ARG360 TYR361 ALA362 VAL363 TYR364 ASN365 SER366 ILE367 LEU368 ARG369 LYS370 LEU371 ASN372 HIS373 ALA374 LYS375 MSE376 PHE377 ALA378 THR379 PHE380 THR381 LEU382 PRO383 ASP384 ALA385 THR386 ALA387 HIS388 PRO389 ILE390 TRP391 THR392 ARG393 PHE394 ASP395 LYS396 LEU397 GLY398 GLY399 ASN400 LEU401 HIS402 GLN403 TYR404 THR405 PHE406 LEU407 PHE408 ASN409 GLU410 PHE411 GLY412 GLU413 ARG414 ARG415 HIS416 ALA417 ILE418 ARG419 PHE420 HIS421 LYS422 LEU423 LEU424 LYS425 VAL426 GLU427 ASN428 GLY429 VAL430 ALA431 ARG432 GLU433 VAL434 ASP435 ASP436 VAL437 THR438 VAL439 PRO440 ILE441 SER442 MSE443 SER444 GLU445 GLN446 LEU447 ASP448 ASN449 LEU450 LEU451 PRO452 ARG453 ASP454 PRO455 ASN456 GLU457 PRO458 ILE459 ALA460 LEU461 TYR462 PHE463 ARG464 ASP465 TYR466 GLY467 ALA468 GLU469 GLN470 HIS471 PHE472 THR473 GLY474 GLU475 PHE476 GLY477 GLY478 ALA479 LYS480 ILE481 GLN482 CYS483 ARG484 ARG485 ASP486 GLN487 LEU488 ALA489 HIS490 MSE491 HIS492 ARG493 ARG494 ARG495 ARG498 ASP499 VAL500 TYR501 LEU502 ASN503 VAL504 SER505 VAL506 ARG507 VAL508 GLN509 SER510 GLN511 SER512 GLU513 ALA514 ARG515 GLY516 GLU517 ARG518 ARG519 PRO520 PRO521 TYR522 ALA523 ALA524 VAL525 PHE526 ARG527 LEU528 VAL529 GLY530 ASP531 ASN532 HIS533 ARG534 ALA535 PHE536 VAL537 HIS538 PHE539 ASP540 LYS541 LEU542 SER543 ASP544 TYR545 LEU546 ALA547 GLU548 HIS549 PRO550 ASP551 ASP552 GLY553 LYS554 LEU555 GLY556 SER557 GLU558 GLY559 LEU560 LEU561 SER562 GLY563 LEU564 ARG565 VAL566 MSE567 SER568 VAL569 ALA570 LEU571 GLY572 LEU573 ARG574 THR575 SER576 ALA577 SER578 ILE579 SER580 VAL581 PHE582 ARG583 VAL584 ALA585 ARG586 LYS587 ASP588 GLU589 LEU590 LYS591 PRO592 ASN593 SER594 LYS595 GLY596 ARG597 VAL598 PRO599 PHE600 PHE601 PHE602 PRO603 ILE604 LYS605 GLY606 ASN607 ASP608 ASN609 LEU610 VAL611 ALA612 VAL613 HIS614 GLU615 ARG616 SER617 GLN618 LEU619 LEU620 LYS621 LEU622 PRO623 GLY624 GLU625 THR626 GLU627 SER628 LYS629 ASP630 LEU631 ARG632 ALA633 ILE634 ARG635 GLU636 GLU637 ARG638 GLN639 ARG640 THR641 LEU642 ARG643 GLN644 LEU645 ARG646 THR647 GLN648 LEU649 ALA650 TYR651 LEU652 ARG653 LEU654 LEU655 VAL656 ARG657 CYS658 GLY659 SER660 GLU661 ASP662 VAL663 GLY664 ARG665 ARG666 GLU667 ARG668 SER669 TRP670 ALA671 LYS672 LEU673 ILE674 GLU675 GLN676 PRO677 VAL678 ASP679 ALA680 ALA681 ASN682 HIS683 MSE684 THR685 PRO686 ASP687 TRP688 ARG689 GLU690 ALA691 PHE692 GLU693 ASN694 GLU695 LEU696 GLN697 LYS698 LEU699 LYS700 SER701 LEU702 HIS703 GLY704 ILE705 CYS706 SER707 ASP708 LYS709 GLU710 TRP711 MSE712 ASP713 ALA714 VAL715 TYR716 GLU717 SER718 VAL719 ARG720 ARG721 VAL722 TRP723 ARG724 HIS725 MSE726 GLY727 LYS728 GLN729 VAL730 ARG731 ASP732 TRP733 ARG734 LYS735 ASP736 VAL737 ARG738 SER739 GLY740 GLU741 ARG742 PRO743 LYS744 ILE745 ARG746 GLY747 TYR748 ALA749 LYS750 ASP751 VAL752 VAL753 GLY754 GLY755 ASN756 SER757 ILE758 GLU759 GLN760 ILE761 GLU762 TYR763 LEU764 GLU765 ARG766 GLN767 TYR768 LYS769 PHE770 LEU771 LYS772 SER773 TRP774 SER775 PHE776 PHE777 GLY778 LYS779 VAL780 SER781 GLY782 GLN783 VAL784 ILE785 ARG786 ALA787 GLU788 LYS789 GLY790 SER791 ARG792 PHE793 ALA794 ILE795 THR796 LEU797 ARG798 GLU799 HIS800 ILE801 ASP802 HIS803 ALA804 LYS805 GLU806 ASP807 ARG808 LEU809 LYS810 LYS811 LEU812 ALA813 ASP814 ARG815 ILE816 ILE817 MSE818 GLU819 ALA820 LEU821 GLY822 TYR823 VAL824 TYR825 ALA826 LEU827 ASP828 GLU829 ARG830 GLY831 LYS832 GLY833 LYS834 TRP835 VAL836 ALA837 LYS838 TYR839 PRO840 PRO841 CYS842 GLN843 LEU844 ILE845 LEU846 LEU847 ALA848 GLU849 LEU850 SER851 GLU852 TYR853 GLN854 PHE855 ASN856 ASN857 ASP858 ARG859 PRO860 PRO861 SER862 GLU863 ASN864 ASN865 GLN866 LEU867 MSE868 GLN869 TRP870 SER871 HIS872 ARG873 GLY874 VAL875 PHE876 GLN877 GLU878 LEU879 ILE880 ASN881 GLN882 ALA883 GLN884 VAL885 HIS886 ASP887 LEU888 LEU889 VAL890 GLY891 THR892 MSE893 TYR894 ALA895 ALA896 PHE897 SER898 SER899 ARG900 PHE901 ASP902 ALA903 ARG904 THR905 GLY906 ALA907 PRO908 GLY909 ILE910 ARG911 CYS912 ARG913 ARG914 VAL915 PRO916 ALA917 ARG918 CYS919 THR920 GLN921 GLU922 HIS923 ASN924 PRO925 GLU926 PRO927 PHE928 PRO929 TRP930 TRP931 LEU932 ASN933 LYS934 PHE935 VAL936 VAL937 GLU938 HIS939 THR940 LEU941 ASP942 ALA943 CYS944 PRO945 LEU946 ARG947 ALA948 ASP949 ASP950 LEU951 ILE952 PRO953 THR954 GLY955 GLU956 GLY957 GLU958 ILE959 PHE960 VAL961 SER962 PRO963 PHE964 SER965 ALA966 GLU967 GLU968 GLY969 ASP970 PHE971 HIS972 GLN973 ILE974 HIS975 ALA976 ALA977 LEU978 ASN979 ALA980 ALA981 GLN982 ASN983 LEU984 GLN985 GLN986 ARG987 LEU988 TRP989 SER990 ASP991 PHE992 ASP993 ILE994 SER995 GLN996 ILE997 ARG998 LEU999 ARG1000 CYS1001 ASP1002 TRP1003 GLY1004 GLU1005 VAL1006 ASP1007 GLY1008 GLU1009 LEU1010 VAL1011 LEU1012 ILE1013 PRO1014 ARG1015 LEU1016 THR1017 GLY1018 LYS1019 ARG1020 THR1021 ALA1022 ASP1023 SER1024 TYR1025 SER1026 ASN1027 LYS1028 VAL1029 PHE1030 TYR1031 THR1032 ASN1033 THR1034 GLY1035 VAL1036 THR1037 TYR1038 TYR1039 GLU1040 ARG1041 GLU1042 ARG1043 GLY1044 ARG1071 GLU1072 LYS1073 SER1074 VAL1075 VAL1076 LEU1077 MSE1078 ARG1079 ASP1080 PRO1081 SER1082 GLY1083 ILE1084 ILE1085 ASN1086 ARG1087 GLY1088 ASN1089 TRP1090 THR1091 ARG1092 GLN1093 LYS1094 GLU1095 PHE1096 TRP1097 SER1098 MSE1099 VAL1100 ASN1101 GLN1102 ARG1103 ILE1104 GLU1105 GLY1106 TYR1107 LEU1108 VAL1109 LYS1110 GLN1111 ILE1112 ARG1113 SER1114
Nucleic acids
Unit 2 G0 G1 U2 C3 U4 A5 G6 A7 G8 G9 A10 C11 A12 G13 A14 A15 U16 U20 C21 A22 A23 C24 G25 G26 G27 U28 G29 U30 G31 C32 C33 A34 A35 U36 G37 G38 C39 C40 A41 C42 U43 U44 U45 C46 C47 A48 G49 G50 U51 G52 G53 C54 A55 A56 A57 G58 C59 C60 C61 G62 U63 U64 G65 A66 G67 C68 U69 U70 C71 G82 A83 A84 G85 U86 G87 G88 C89 A90 C91 C92 A93 G94 A95 A96 C97 C98 G99 G100 A101 G102 G103 A104 C105 A106 A107 A108 G109 U110 C111
Other macromolecules
Unit 3 DG1 DA2 DC3 DT4 DT5 DT6 DG7 DT8 DC9 DC10 DT11 DC12 DC13 DG14 DG15 DT16 DT17 DC18 DT19 DG20 DG21 DA22 DA23 DC24 DC25 DA26 DC27 DA28
Unit 4 DT1 DG2 DT3 DG4 DG5 DT6 DT7 DC8
Unit 5 DT1 DG2 DT3 DG4 DG5 DT6 DT7
Ligands
Unit 6 SO41201 SO41202
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany