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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF PNOB8 PARA BOUND TO NONSPECIFIC DNA
Keywords PARA, NONSPECIFIC DNA BINDING, NUCLEOID, SEGREGATION, PARB, BINDING PROTEIN-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5U1J     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UNCHARACTERIZED PROTEIN  B 291 2350 0
2  Protein   UNCHARACTERIZED PROTEIN  A 289 2346 0
3  Protein   UNCHARACTERIZED PROTEIN  C 288 2331 0
4  Protein   UNCHARACTERIZED PROTEIN  D 291 2348 0
5  Other macromolecule   DNA (5'- D(*TP*GP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP*CP*AP*TP*GP*AP*CP*AP 3')  U 21 428 0
6  Other macromolecule   DNA (5'- D(*CP*GP*TP*GP*TP*AP*AP*TP*GP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP 3')  W 21 429 0
7  Ligand   UNCHARACTERIZED PROTEIN  B 1 0 31
8  Ligand   UNCHARACTERIZED PROTEIN  A 1 0 31
9  Ligand   UNCHARACTERIZED PROTEIN  C 1 0 31
10  Ligand   UNCHARACTERIZED PROTEIN  D 1 0 31
total       1205 10232 124
Proteins
Unit 1 ILE2 ALA3 LYS4 VAL5 ILE6 THR7 ILE8 HIS9 ASN10 PHE11 LYS12 GLY13 GLY14 VAL15 GLY16 LYS17 THR18 THR19 THR20 THR21 ALA22 ILE23 ILE24 ALA25 MET26 GLY27 LEU28 GLY29 ALA30 MET31 GLY32 LYS33 ARG34 VAL35 LEU36 LEU37 ILE38 ASP39 PHE40 ASP41 ALA42 GLN43 MET44 SER45 LEU46 THR47 GLN48 ILE49 PHE50 VAL51 ARG52 GLU53 GLU54 ASP55 ARG56 LEU57 LYS58 ILE59 LEU60 GLU61 SER62 SER63 HIS64 GLN68 ASP69 LYS70 SER71 ALA72 PHE73 ALA74 LEU75 LEU76 ARG77 THR78 MET79 GLU80 PRO81 ALA82 ARG83 ILE84 LYS85 PHE86 PHE87 HIS88 GLU89 GLY90 LYS91 GLY92 VAL93 LYS94 PHE95 GLY96 ILE97 ASP98 VAL99 ILE100 PRO101 GLY102 SER103 TYR104 MET105 SER106 ILE107 PHE108 LYS109 LEU110 MET111 PHE112 GLU113 ILE118 GLN119 SER120 GLU121 TRP122 ASN123 ILE124 LEU125 ARG126 MET127 LEU128 ASP129 LEU130 TYR131 ARG132 ASP133 GLN134 TYR135 ASP136 TYR137 ILE138 LEU139 ILE140 ASP141 THR142 ALA143 PRO144 SER145 ASP146 THR147 VAL148 THR149 ILE150 LYS151 PRO152 ILE153 LEU154 ARG155 ALA156 SER157 HIS158 TYR159 LEU160 LEU161 ILE162 PRO163 GLU164 ASP165 GLY166 THR167 PRO168 GLU169 ALA170 PHE171 THR172 ALA173 MET174 ARG175 ILE176 PHE177 LEU178 ASN179 GLU180 ALA181 LEU182 PRO183 LYS184 TYR185 ILE186 LEU187 PRO188 ARG189 PRO190 GLU191 GLY192 GLY193 PHE194 TYR195 LYS196 TYR197 PRO198 ARG199 ILE200 LEU201 GLY202 VAL203 ILE204 LEU205 THR206 ARG207 VAL208 ARG209 ARG210 ASN211 SER212 THR213 ALA214 ILE215 LEU216 MET217 LYS218 HIS219 ASN220 LYS221 ILE222 LEU223 GLU224 GLU225 GLU226 LEU227 SER228 ASN229 SER230 GLU231 LEU232 LYS233 ASP234 HIS235 VAL236 ILE237 TYR238 PRO239 PRO240 TYR241 PHE242 GLY243 ALA244 ASP245 LYS246 ASP247 ASN248 PRO249 GLU250 ASP251 TYR252 ILE253 LEU254 SER255 SER256 SER262 ASP263 LEU264 ILE265 TRP266 ARG267 ASP268 GLU269 LYS270 ARG271 ALA272 PRO273 ILE274 SER275 GLU276 VAL277 PHE278 ASP279 LYS280 LEU281 PHE282 ALA294 PHE295 PHE296 SER297 LYS298 VAL299 PHE300 THR301 GLU302 ILE303 PRO304 LYS305 GLU306 VAL307 VAL308 ARG309 ARG310 VAL311 GLU312 ASN313 ASP314 GLN315
Unit 2 ILE2 ALA3 LYS4 VAL5 ILE6 THR7 ILE8 HIS9 ASN10 PHE11 LYS12 GLY13 GLY14 VAL15 GLY16 LYS17 THR18 THR19 THR20 THR21 ALA22 ILE23 ILE24 ALA25 MET26 GLY27 LEU28 GLY29 ALA30 MET31 GLY32 LYS33 ARG34 VAL35 LEU36 LEU37 ILE38 ASP39 PHE40 ASP41 ALA42 GLN43 MET44 SER45 LEU46 THR47 GLN48 ILE49 PHE50 VAL51 ARG52 GLU53 GLU54 ASP55 ARG56 LEU57 LYS58 ILE59 LEU60 GLU61 SER62 SER63 HIS64 ASP65 GLN68 ASP69 LYS70 SER71 ALA72 PHE73 ALA74 LEU75 LEU76 ARG77 THR78 MET79 GLU80 PRO81 ALA82 ARG83 ILE84 LYS85 PHE86 PHE87 HIS88 GLU89 GLY90 LYS91 GLY92 VAL93 LYS94 PHE95 GLY96 ILE97 ASP98 VAL99 ILE100 PRO101 GLY102 SER103 TYR104 MET105 SER106 ILE107 PHE108 LYS109 LEU110 MET111 PHE112 GLU113 ILE118 GLN119 SER120 GLU121 TRP122 ASN123 ILE124 LEU125 ARG126 MET127 LEU128 ASP129 LEU130 TYR131 ARG132 ASP133 GLN134 TYR135 ASP136 TYR137 ILE138 LEU139 ILE140 ASP141 THR142 ALA143 PRO144 SER145 ASP146 THR147 VAL148 THR149 ILE150 LYS151 PRO152 ILE153 LEU154 ARG155 ALA156 SER157 HIS158 TYR159 LEU160 LEU161 ILE162 PRO163 GLU164 ASP165 GLY166 THR167 PRO168 GLU169 ALA170 PHE171 THR172 ALA173 MET174 ARG175 ILE176 PHE177 LEU178 ASN179 GLU180 ALA181 LEU182 PRO183 LYS184 TYR185 ILE186 LEU187 PRO188 ARG189 PRO190 GLU191 GLY192 GLY193 PHE194 TYR195 LYS196 TYR197 PRO198 ARG199 ILE200 LEU201 GLY202 VAL203 ILE204 LEU205 THR206 ARG207 VAL208 ARG209 ARG210 ASN211 SER212 THR213 ALA214 ILE215 LEU216 MET217 LYS218 HIS219 ASN220 LYS221 ILE222 LEU223 GLU224 GLU225 GLU226 LEU227 SER228 ASN229 SER230 GLU231 LEU232 LYS233 ASP234 HIS235 VAL236 ILE237 TYR238 PRO239 PRO240 TYR241 PHE242 GLY243 ALA244 ASP245 LYS246 ASP247 ASN248 PRO249 GLU250 ASP251 TYR252 ILE253 LEU254 SER255 LEU261 SER262 ASP263 LEU264 ILE265 TRP266 ARG267 ASP268 GLU269 LYS270 ARG271 ALA272 PRO273 ILE274 SER275 GLU276 VAL277 PHE278 ASP279 LYS280 LEU281 PHE296 SER297 LYS298 VAL299 PHE300 THR301 GLU302 ILE303 PRO304 LYS305 GLU306 VAL307 VAL308 ARG309 ARG310 VAL311 GLU312 ASN313 ASP314 GLN315
Unit 3 ILE2 ALA3 LYS4 VAL5 ILE6 THR7 ILE8 HIS9 ASN10 PHE11 LYS12 GLY13 GLY14 VAL15 GLY16 LYS17 THR18 THR19 THR20 THR21 ALA22 ILE23 ILE24 ALA25 MET26 GLY27 LEU28 GLY29 ALA30 MET31 GLY32 LYS33 ARG34 VAL35 LEU36 LEU37 ILE38 ASP39 PHE40 ASP41 ALA42 GLN43 MET44 SER45 LEU46 THR47 GLN48 ILE49 PHE50 VAL51 ARG52 GLU53 GLU54 ASP55 ARG56 LEU57 LYS58 ILE59 LEU60 GLU61 SER62 SER63 HIS64 ASP65 ASP69 LYS70 SER71 ALA72 PHE73 ALA74 LEU75 LEU76 ARG77 THR78 MET79 GLU80 PRO81 ALA82 ARG83 ILE84 LYS85 PHE86 PHE87 HIS88 GLU89 GLY90 LYS91 GLY92 VAL93 LYS94 PHE95 GLY96 ILE97 ASP98 VAL99 ILE100 PRO101 GLY102 SER103 TYR104 MET105 SER106 ILE107 PHE108 LYS109 LEU110 MET111 PHE112 ILE118 GLN119 SER120 GLU121 TRP122 ASN123 ILE124 LEU125 ARG126 MET127 LEU128 ASP129 LEU130 TYR131 ARG132 ASP133 GLN134 TYR135 ASP136 TYR137 ILE138 LEU139 ILE140 ASP141 THR142 ALA143 PRO144 SER145 ASP146 THR147 VAL148 THR149 ILE150 LYS151 PRO152 ILE153 LEU154 ARG155 ALA156 SER157 HIS158 TYR159 LEU160 LEU161 ILE162 PRO163 GLU164 ASP165 GLY166 THR167 PRO168 GLU169 ALA170 PHE171 THR172 ALA173 MET174 ARG175 ILE176 PHE177 LEU178 ASN179 GLU180 ALA181 LEU182 PRO183 LYS184 TYR185 ILE186 LEU187 PRO188 ARG189 PRO190 GLU191 GLY192 GLY193 PHE194 TYR195 LYS196 TYR197 PRO198 ARG199 ILE200 LEU201 GLY202 VAL203 ILE204 LEU205 THR206 ARG207 VAL208 ARG209 ARG210 ASN211 SER212 THR213 ALA214 ILE215 LEU216 MET217 LYS218 HIS219 ASN220 LYS221 ILE222 LEU223 GLU224 GLU225 GLU226 LEU227 SER228 ASN229 SER230 GLU231 LEU232 LYS233 ASP234 HIS235 VAL236 ILE237 TYR238 PRO239 PRO240 TYR241 PHE242 GLY243 ALA244 ASP245 LYS246 ASP247 ASN248 PRO249 GLU250 ASP251 TYR252 ILE253 LEU254 SER255 SER256 SER262 ASP263 LEU264 ILE265 TRP266 ARG267 ASP268 GLU269 LYS270 ARG271 ALA272 PRO273 ILE274 SER275 GLU276 VAL277 PHE278 ASP279 LYS280 LEU281 PHE282 PHE296 SER297 LYS298 VAL299 PHE300 THR301 GLU302 ILE303 PRO304 LYS305 GLU306 VAL307 VAL308 ARG309 ARG310 VAL311 GLU312 ASN313 ASP314 GLN315
Unit 4 ILE2 ALA3 LYS4 VAL5 ILE6 THR7 ILE8 HIS9 ASN10 PHE11 LYS12 GLY13 GLY14 VAL15 GLY16 LYS17 THR18 THR19 THR20 THR21 ALA22 ILE23 ILE24 ALA25 MET26 GLY27 LEU28 GLY29 ALA30 MET31 GLY32 LYS33 ARG34 VAL35 LEU36 LEU37 ILE38 ASP39 PHE40 ASP41 ALA42 GLN43 MET44 SER45 LEU46 THR47 GLN48 ILE49 PHE50 VAL51 ARG52 GLU53 GLU54 ASP55 ARG56 LEU57 LYS58 ILE59 LEU60 GLU61 SER62 SER63 HIS64 GLN68 ASP69 LYS70 SER71 ALA72 PHE73 ALA74 LEU75 LEU76 ARG77 THR78 MET79 GLU80 PRO81 ALA82 ARG83 ILE84 LYS85 PHE86 PHE87 HIS88 GLU89 GLY90 LYS91 GLY92 VAL93 LYS94 PHE95 GLY96 ILE97 ASP98 VAL99 ILE100 PRO101 GLY102 SER103 TYR104 MET105 SER106 ILE107 PHE108 LYS109 LEU110 MET111 PHE112 GLN119 SER120 GLU121 TRP122 ASN123 ILE124 LEU125 ARG126 MET127 LEU128 ASP129 LEU130 TYR131 ARG132 ASP133 GLN134 TYR135 ASP136 TYR137 ILE138 LEU139 ILE140 ASP141 THR142 ALA143 PRO144 SER145 ASP146 THR147 VAL148 THR149 ILE150 LYS151 PRO152 ILE153 LEU154 ARG155 ALA156 SER157 HIS158 TYR159 LEU160 LEU161 ILE162 PRO163 GLU164 ASP165 GLY166 THR167 PRO168 GLU169 ALA170 PHE171 THR172 ALA173 MET174 ARG175 ILE176 PHE177 LEU178 ASN179 GLU180 ALA181 LEU182 PRO183 LYS184 TYR185 ILE186 LEU187 PRO188 ARG189 PRO190 GLU191 GLY192 GLY193 PHE194 TYR195 LYS196 TYR197 PRO198 ARG199 ILE200 LEU201 GLY202 VAL203 ILE204 LEU205 THR206 ARG207 VAL208 ARG209 ARG210 ASN211 SER212 THR213 ALA214 ILE215 LEU216 MET217 LYS218 HIS219 ASN220 LYS221 ILE222 LEU223 GLU224 GLU225 GLU226 LEU227 SER228 ASN229 SER230 GLU231 LEU232 LYS233 ASP234 HIS235 VAL236 ILE237 TYR238 PRO239 PRO240 TYR241 PHE242 GLY243 ALA244 ASP245 LYS246 ASP247 ASN248 PRO249 GLU250 ASP251 TYR252 ILE253 LEU254 SER255 SER256 ARG257 LYS258 GLU259 TYR260 LEU261 SER262 ASP263 LEU264 ILE265 TRP266 ARG267 ASP268 GLU269 LYS270 ARG271 ALA272 PRO273 ILE274 SER275 GLU276 VAL277 PHE278 ASP279 LYS280 LEU281 PHE282 SER297 LYS298 VAL299 PHE300 THR301 GLU302 ILE303 PRO304 LYS305 GLU306 VAL307 VAL308 ARG309 ARG310 VAL311 GLU312 ASN313 ASP314 GLN315
Other macromolecules
Unit 5 DT1 DG2 DA3 DC4 DG5 DC6 DC7 DG8 DG9 DC10 DG11 DT12 DC13 DA14 DT15 DG16 DA17 DC18 DA19 DC20 DG21
Unit 6 DC4 DG5 DT6 DG7 DT8 DA9 DA10 DT11 DG12 DA13 DC14 DG15 DC16 DC17 DG18 DG19 DC20 DG21 DT22 DC23 DA24
Ligands
Unit 7 ANP401
Unit 8 ANP401
Unit 9 ANP401
Unit 10 ANP401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany