Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF THE MAJOR CAPSID PROTEIN OF PBCV-1
Keywords VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5TIP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MAJOR CAPSID PROTEIN  A 436 3395 0
2  Protein   MAJOR CAPSID PROTEIN  B 436 3395 0
3  Protein   MAJOR CAPSID PROTEIN  C 436 3395 0
4  Protein   MAJOR CAPSID PROTEIN  D 436 3395 0
5  Ligand    E 9 0 93
6  Ligand    F 9 0 93
7  Ligand    G 7 0 71
8  Ligand    H 2 0 21
9  Ligand    I 7 0 70
10  Ligand    J 9 0 93
11  Ligand    K 7 0 71
12  Ligand    L 2 0 21
13  Ligand    M 7 0 71
14  Ligand    N 9 0 93
15  Ligand    O 7 0 71
16  Ligand    P 8 0 81
17  Ligand    Q 9 0 93
18  Ligand    R 7 0 71
19  Ligand    S 2 0 21
20  Ligand   MAJOR CAPSID PROTEIN  A 1 0 1
21  Ligand   MAJOR CAPSID PROTEIN  B 1 0 1
22  Ligand   MAJOR CAPSID PROTEIN  C 2 0 12
23  Ligand   MAJOR CAPSID PROTEIN  D 1 0 1
24 Water     1159 0 1159
total       3009 13580 2208
Proteins
Unit 1 ALA2 GLY3 GLY4 LEU5 SER6 GLN7 LEU8 VAL9 ALA10 TYR11 GLY12 ALA13 GLN14 ASP15 VAL16 TYR17 LEU18 THR19 GLY20 ASN21 PRO22 GLN23 ILE24 THR25 PHE26 PHE27 LYS28 THR29 VAL30 TYR31 ARG32 ARG33 TYR34 THR35 ASN36 PHE37 ALA38 ILE39 GLU40 SER41 ILE42 GLN43 GLN44 THR45 ILE46 ASN47 GLY48 SER49 VAL50 GLY51 PHE52 GLY53 ASN54 LYS55 VAL56 SER57 THR58 GLN59 ILE60 SER61 ARG62 ASN63 GLY64 ASP65 LEU66 ILE67 THR68 ASP69 ILE70 VAL71 VAL72 GLU73 PHE74 VAL75 LEU76 THR77 LYS78 GLY79 GLY80 ASN81 GLY82 GLY83 THR84 THR85 TYR86 TYR87 PRO88 ALA89 GLU90 GLU91 LEU92 LEU93 GLN94 ASP95 VAL96 GLU97 LEU98 GLU99 ILE100 GLY101 GLY102 GLN103 ARG104 ILE105 ASP106 LYS107 HIS108 TYR109 ASN110 ASP111 TRP112 PHE113 ARG114 THR115 TYR116 ASP117 ALA118 LEU119 PHE120 ARG121 MET122 ASN123 ASP124 ASP125 ARG126 TYR127 ASN128 TYR129 ARG130 ARG131 MET132 THR133 ASP134 TRP135 VAL136 ASN137 ASN138 GLU139 LEU140 VAL141 GLY142 ALA143 GLN144 LYS145 ARG146 PHE147 TYR148 VAL149 PRO150 LEU151 ILE152 PHE153 PHE154 PHE155 ASN156 GLN157 THR158 PRO159 GLY160 LEU161 ALA162 LEU163 PRO164 LEU165 ILE166 ALA167 LEU168 GLN169 TYR170 HIS171 GLU172 VAL173 LYS174 LEU175 TYR176 PHE177 THR178 LEU179 ALA180 SER181 GLN182 VAL183 GLN184 GLY185 VAL186 ASN187 TYR188 ASN189 GLY190 SER191 SER192 ALA193 ILE194 ALA195 GLY196 ALA197 ALA198 GLN199 PRO200 THR201 MET202 SER203 VAL204 TRP205 VAL206 ASP207 TYR208 ILE209 PHE210 LEU211 ASP212 THR213 GLN214 GLU215 ARG216 THR217 ARG218 PHE219 ALA220 GLN221 LEU222 PRO223 HIS224 GLU225 TYR226 LEU227 ILE228 GLU229 GLN230 LEU231 GLN232 PHE233 THR234 GLY235 SER236 GLU237 THR238 ALA239 THR240 PRO241 SER242 ALA243 THR244 THR245 GLN246 ALA247 SER248 GLN249 ASN250 ILE251 ARG252 LEU253 ASN254 PHE255 ASN256 HIS257 PRO258 THR259 LYS260 TYR261 LEU262 ALA263 TRP264 ASN265 PHE266 ASN267 ASN268 PRO269 THR270 ASN271 TYR272 GLY273 GLN274 TYR275 THR276 ALA277 LEU278 ALA279 ASN280 ILE281 PRO282 GLY283 ALA284 CYS285 SER286 GLY287 ALA288 GLY289 THR290 ALA291 ALA292 ALA293 THR294 VAL295 THR296 THR297 PRO298 ASP299 TYR300 GLY301 ASN302 THR303 GLY304 THR305 TYR306 ASN307 GLU308 GLN309 LEU310 ALA311 VAL312 LEU313 ASP314 SER315 ALA316 LYS317 ILE318 GLN319 LEU320 ASN321 GLY322 GLN323 ASP324 ARG325 PHE326 ALA327 THR328 ARG329 LYS330 GLY331 SER332 TYR333 PHE334 ASN335 LYS336 VAL337 GLN338 PRO339 TYR340 GLN341 SER342 ILE343 GLY344 GLY345 VAL346 THR347 PRO348 ALA349 GLY350 VAL351 TYR352 LEU353 TYR354 SER355 PHE356 ALA357 LEU358 LYS359 PRO360 ALA361 GLY362 ARG363 GLN364 PRO365 SER366 GLY367 THR368 CYS369 ASN370 PHE371 SER372 ARG373 ILE374 ASP375 ASN376 ALA377 THR378 LEU379 SER380 LEU381 THR382 TYR383 LYS384 THR385 CYS386 SER387 ILE388 ASP389 ALA390 THR391 SER392 PRO393 ALA394 ALA395 VAL396 LEU397 GLY398 ASN399 THR400 GLU401 THR402 VAL403 THR404 ALA405 ASN406 THR407 ALA408 THR409 LEU410 LEU411 THR412 ALA413 LEU414 ASN415 ILE416 TYR417 ALA418 LYS419 ASN420 TYR421 ASN422 VAL423 LEU424 ARG425 ILE426 MET427 SER428 GLY429 MET430 GLY431 GLY432 LEU433 ALA434 TYR435 ALA436 ASN437
Unit 2 ALA2 GLY3 GLY4 LEU5 SER6 GLN7 LEU8 VAL9 ALA10 TYR11 GLY12 ALA13 GLN14 ASP15 VAL16 TYR17 LEU18 THR19 GLY20 ASN21 PRO22 GLN23 ILE24 THR25 PHE26 PHE27 LYS28 THR29 VAL30 TYR31 ARG32 ARG33 TYR34 THR35 ASN36 PHE37 ALA38 ILE39 GLU40 SER41 ILE42 GLN43 GLN44 THR45 ILE46 ASN47 GLY48 SER49 VAL50 GLY51 PHE52 GLY53 ASN54 LYS55 VAL56 SER57 THR58 GLN59 ILE60 SER61 ARG62 ASN63 GLY64 ASP65 LEU66 ILE67 THR68 ASP69 ILE70 VAL71 VAL72 GLU73 PHE74 VAL75 LEU76 THR77 LYS78 GLY79 GLY80 ASN81 GLY82 GLY83 THR84 THR85 TYR86 TYR87 PRO88 ALA89 GLU90 GLU91 LEU92 LEU93 GLN94 ASP95 VAL96 GLU97 LEU98 GLU99 ILE100 GLY101 GLY102 GLN103 ARG104 ILE105 ASP106 LYS107 HIS108 TYR109 ASN110 ASP111 TRP112 PHE113 ARG114 THR115 TYR116 ASP117 ALA118 LEU119 PHE120 ARG121 MET122 ASN123 ASP124 ASP125 ARG126 TYR127 ASN128 TYR129 ARG130 ARG131 MET132 THR133 ASP134 TRP135 VAL136 ASN137 ASN138 GLU139 LEU140 VAL141 GLY142 ALA143 GLN144 LYS145 ARG146 PHE147 TYR148 VAL149 PRO150 LEU151 ILE152 PHE153 PHE154 PHE155 ASN156 GLN157 THR158 PRO159 GLY160 LEU161 ALA162 LEU163 PRO164 LEU165 ILE166 ALA167 LEU168 GLN169 TYR170 HIS171 GLU172 VAL173 LYS174 LEU175 TYR176 PHE177 THR178 LEU179 ALA180 SER181 GLN182 VAL183 GLN184 GLY185 VAL186 ASN187 TYR188 ASN189 GLY190 SER191 SER192 ALA193 ILE194 ALA195 GLY196 ALA197 ALA198 GLN199 PRO200 THR201 MET202 SER203 VAL204 TRP205 VAL206 ASP207 TYR208 ILE209 PHE210 LEU211 ASP212 THR213 GLN214 GLU215 ARG216 THR217 ARG218 PHE219 ALA220 GLN221 LEU222 PRO223 HIS224 GLU225 TYR226 LEU227 ILE228 GLU229 GLN230 LEU231 GLN232 PHE233 THR234 GLY235 SER236 GLU237 THR238 ALA239 THR240 PRO241 SER242 ALA243 THR244 THR245 GLN246 ALA247 SER248 GLN249 ASN250 ILE251 ARG252 LEU253 ASN254 PHE255 ASN256 HIS257 PRO258 THR259 LYS260 TYR261 LEU262 ALA263 TRP264 ASN265 PHE266 ASN267 ASN268 PRO269 THR270 ASN271 TYR272 GLY273 GLN274 TYR275 THR276 ALA277 LEU278 ALA279 ASN280 ILE281 PRO282 GLY283 ALA284 CYS285 SER286 GLY287 ALA288 GLY289 THR290 ALA291 ALA292 ALA293 THR294 VAL295 THR296 THR297 PRO298 ASP299 TYR300 GLY301 ASN302 THR303 GLY304 THR305 TYR306 ASN307 GLU308 GLN309 LEU310 ALA311 VAL312 LEU313 ASP314 SER315 ALA316 LYS317 ILE318 GLN319 LEU320 ASN321 GLY322 GLN323 ASP324 ARG325 PHE326 ALA327 THR328 ARG329 LYS330 GLY331 SER332 TYR333 PHE334 ASN335 LYS336 VAL337 GLN338 PRO339 TYR340 GLN341 SER342 ILE343 GLY344 GLY345 VAL346 THR347 PRO348 ALA349 GLY350 VAL351 TYR352 LEU353 TYR354 SER355 PHE356 ALA357 LEU358 LYS359 PRO360 ALA361 GLY362 ARG363 GLN364 PRO365 SER366 GLY367 THR368 CYS369 ASN370 PHE371 SER372 ARG373 ILE374 ASP375 ASN376 ALA377 THR378 LEU379 SER380 LEU381 THR382 TYR383 LYS384 THR385 CYS386 SER387 ILE388 ASP389 ALA390 THR391 SER392 PRO393 ALA394 ALA395 VAL396 LEU397 GLY398 ASN399 THR400 GLU401 THR402 VAL403 THR404 ALA405 ASN406 THR407 ALA408 THR409 LEU410 LEU411 THR412 ALA413 LEU414 ASN415 ILE416 TYR417 ALA418 LYS419 ASN420 TYR421 ASN422 VAL423 LEU424 ARG425 ILE426 MET427 SER428 GLY429 MET430 GLY431 GLY432 LEU433 ALA434 TYR435 ALA436 ASN437
Unit 3 ALA2 GLY3 GLY4 LEU5 SER6 GLN7 LEU8 VAL9 ALA10 TYR11 GLY12 ALA13 GLN14 ASP15 VAL16 TYR17 LEU18 THR19 GLY20 ASN21 PRO22 GLN23 ILE24 THR25 PHE26 PHE27 LYS28 THR29 VAL30 TYR31 ARG32 ARG33 TYR34 THR35 ASN36 PHE37 ALA38 ILE39 GLU40 SER41 ILE42 GLN43 GLN44 THR45 ILE46 ASN47 GLY48 SER49 VAL50 GLY51 PHE52 GLY53 ASN54 LYS55 VAL56 SER57 THR58 GLN59 ILE60 SER61 ARG62 ASN63 GLY64 ASP65 LEU66 ILE67 THR68 ASP69 ILE70 VAL71 VAL72 GLU73 PHE74 VAL75 LEU76 THR77 LYS78 GLY79 GLY80 ASN81 GLY82 GLY83 THR84 THR85 TYR86 TYR87 PRO88 ALA89 GLU90 GLU91 LEU92 LEU93 GLN94 ASP95 VAL96 GLU97 LEU98 GLU99 ILE100 GLY101 GLY102 GLN103 ARG104 ILE105 ASP106 LYS107 HIS108 TYR109 ASN110 ASP111 TRP112 PHE113 ARG114 THR115 TYR116 ASP117 ALA118 LEU119 PHE120 ARG121 MET122 ASN123 ASP124 ASP125 ARG126 TYR127 ASN128 TYR129 ARG130 ARG131 MET132 THR133 ASP134 TRP135 VAL136 ASN137 ASN138 GLU139 LEU140 VAL141 GLY142 ALA143 GLN144 LYS145 ARG146 PHE147 TYR148 VAL149 PRO150 LEU151 ILE152 PHE153 PHE154 PHE155 ASN156 GLN157 THR158 PRO159 GLY160 LEU161 ALA162 LEU163 PRO164 LEU165 ILE166 ALA167 LEU168 GLN169 TYR170 HIS171 GLU172 VAL173 LYS174 LEU175 TYR176 PHE177 THR178 LEU179 ALA180 SER181 GLN182 VAL183 GLN184 GLY185 VAL186 ASN187 TYR188 ASN189 GLY190 SER191 SER192 ALA193 ILE194 ALA195 GLY196 ALA197 ALA198 GLN199 PRO200 THR201 MET202 SER203 VAL204 TRP205 VAL206 ASP207 TYR208 ILE209 PHE210 LEU211 ASP212 THR213 GLN214 GLU215 ARG216 THR217 ARG218 PHE219 ALA220 GLN221 LEU222 PRO223 HIS224 GLU225 TYR226 LEU227 ILE228 GLU229 GLN230 LEU231 GLN232 PHE233 THR234 GLY235 SER236 GLU237 THR238 ALA239 THR240 PRO241 SER242 ALA243 THR244 THR245 GLN246 ALA247 SER248 GLN249 ASN250 ILE251 ARG252 LEU253 ASN254 PHE255 ASN256 HIS257 PRO258 THR259 LYS260 TYR261 LEU262 ALA263 TRP264 ASN265 PHE266 ASN267 ASN268 PRO269 THR270 ASN271 TYR272 GLY273 GLN274 TYR275 THR276 ALA277 LEU278 ALA279 ASN280 ILE281 PRO282 GLY283 ALA284 CYS285 SER286 GLY287 ALA288 GLY289 THR290 ALA291 ALA292 ALA293 THR294 VAL295 THR296 THR297 PRO298 ASP299 TYR300 GLY301 ASN302 THR303 GLY304 THR305 TYR306 ASN307 GLU308 GLN309 LEU310 ALA311 VAL312 LEU313 ASP314 SER315 ALA316 LYS317 ILE318 GLN319 LEU320 ASN321 GLY322 GLN323 ASP324 ARG325 PHE326 ALA327 THR328 ARG329 LYS330 GLY331 SER332 TYR333 PHE334 ASN335 LYS336 VAL337 GLN338 PRO339 TYR340 GLN341 SER342 ILE343 GLY344 GLY345 VAL346 THR347 PRO348 ALA349 GLY350 VAL351 TYR352 LEU353 TYR354 SER355 PHE356 ALA357 LEU358 LYS359 PRO360 ALA361 GLY362 ARG363 GLN364 PRO365 SER366 GLY367 THR368 CYS369 ASN370 PHE371 SER372 ARG373 ILE374 ASP375 ASN376 ALA377 THR378 LEU379 SER380 LEU381 THR382 TYR383 LYS384 THR385 CYS386 SER387 ILE388 ASP389 ALA390 THR391 SER392 PRO393 ALA394 ALA395 VAL396 LEU397 GLY398 ASN399 THR400 GLU401 THR402 VAL403 THR404 ALA405 ASN406 THR407 ALA408 THR409 LEU410 LEU411 THR412 ALA413 LEU414 ASN415 ILE416 TYR417 ALA418 LYS419 ASN420 TYR421 ASN422 VAL423 LEU424 ARG425 ILE426 MET427 SER428 GLY429 MET430 GLY431 GLY432 LEU433 ALA434 TYR435 ALA436 ASN437
Unit 4 ALA2 GLY3 GLY4 LEU5 SER6 GLN7 LEU8 VAL9 ALA10 TYR11 GLY12 ALA13 GLN14 ASP15 VAL16 TYR17 LEU18 THR19 GLY20 ASN21 PRO22 GLN23 ILE24 THR25 PHE26 PHE27 LYS28 THR29 VAL30 TYR31 ARG32 ARG33 TYR34 THR35 ASN36 PHE37 ALA38 ILE39 GLU40 SER41 ILE42 GLN43 GLN44 THR45 ILE46 ASN47 GLY48 SER49 VAL50 GLY51 PHE52 GLY53 ASN54 LYS55 VAL56 SER57 THR58 GLN59 ILE60 SER61 ARG62 ASN63 GLY64 ASP65 LEU66 ILE67 THR68 ASP69 ILE70 VAL71 VAL72 GLU73 PHE74 VAL75 LEU76 THR77 LYS78 GLY79 GLY80 ASN81 GLY82 GLY83 THR84 THR85 TYR86 TYR87 PRO88 ALA89 GLU90 GLU91 LEU92 LEU93 GLN94 ASP95 VAL96 GLU97 LEU98 GLU99 ILE100 GLY101 GLY102 GLN103 ARG104 ILE105 ASP106 LYS107 HIS108 TYR109 ASN110 ASP111 TRP112 PHE113 ARG114 THR115 TYR116 ASP117 ALA118 LEU119 PHE120 ARG121 MET122 ASN123 ASP124 ASP125 ARG126 TYR127 ASN128 TYR129 ARG130 ARG131 MET132 THR133 ASP134 TRP135 VAL136 ASN137 ASN138 GLU139 LEU140 VAL141 GLY142 ALA143 GLN144 LYS145 ARG146 PHE147 TYR148 VAL149 PRO150 LEU151 ILE152 PHE153 PHE154 PHE155 ASN156 GLN157 THR158 PRO159 GLY160 LEU161 ALA162 LEU163 PRO164 LEU165 ILE166 ALA167 LEU168 GLN169 TYR170 HIS171 GLU172 VAL173 LYS174 LEU175 TYR176 PHE177 THR178 LEU179 ALA180 SER181 GLN182 VAL183 GLN184 GLY185 VAL186 ASN187 TYR188 ASN189 GLY190 SER191 SER192 ALA193 ILE194 ALA195 GLY196 ALA197 ALA198 GLN199 PRO200 THR201 MET202 SER203 VAL204 TRP205 VAL206 ASP207 TYR208 ILE209 PHE210 LEU211 ASP212 THR213 GLN214 GLU215 ARG216 THR217 ARG218 PHE219 ALA220 GLN221 LEU222 PRO223 HIS224 GLU225 TYR226 LEU227 ILE228 GLU229 GLN230 LEU231 GLN232 PHE233 THR234 GLY235 SER236 GLU237 THR238 ALA239 THR240 PRO241 SER242 ALA243 THR244 THR245 GLN246 ALA247 SER248 GLN249 ASN250 ILE251 ARG252 LEU253 ASN254 PHE255 ASN256 HIS257 PRO258 THR259 LYS260 TYR261 LEU262 ALA263 TRP264 ASN265 PHE266 ASN267 ASN268 PRO269 THR270 ASN271 TYR272 GLY273 GLN274 TYR275 THR276 ALA277 LEU278 ALA279 ASN280 ILE281 PRO282 GLY283 ALA284 CYS285 SER286 GLY287 ALA288 GLY289 THR290 ALA291 ALA292 ALA293 THR294 VAL295 THR296 THR297 PRO298 ASP299 TYR300 GLY301 ASN302 THR303 GLY304 THR305 TYR306 ASN307 GLU308 GLN309 LEU310 ALA311 VAL312 LEU313 ASP314 SER315 ALA316 LYS317 ILE318 GLN319 LEU320 ASN321 GLY322 GLN323 ASP324 ARG325 PHE326 ALA327 THR328 ARG329 LYS330 GLY331 SER332 TYR333 PHE334 ASN335 LYS336 VAL337 GLN338 PRO339 TYR340 GLN341 SER342 ILE343 GLY344 GLY345 VAL346 THR347 PRO348 ALA349 GLY350 VAL351 TYR352 LEU353 TYR354 SER355 PHE356 ALA357 LEU358 LYS359 PRO360 ALA361 GLY362 ARG363 GLN364 PRO365 SER366 GLY367 THR368 CYS369 ASN370 PHE371 SER372 ARG373 ILE374 ASP375 ASN376 ALA377 THR378 LEU379 SER380 LEU381 THR382 TYR383 LYS384 THR385 CYS386 SER387 ILE388 ASP389 ALA390 THR391 SER392 PRO393 ALA394 ALA395 VAL396 LEU397 GLY398 ASN399 THR400 GLU401 THR402 VAL403 THR404 ALA405 ASN406 THR407 ALA408 THR409 LEU410 LEU411 THR412 ALA413 LEU414 ASN415 ILE416 TYR417 ALA418 LYS419 ASN420 TYR421 ASN422 VAL423 LEU424 ARG425 ILE426 MET427 SER428 GLY429 MET430 GLY431 GLY432 LEU433 ALA434 TYR435 ALA436 ASN437
Ligands
Unit 5 BGC1 FUC2 XYP3 RM44 7CV5 XXR6 MAN7 GLA8 XYP9
Unit 6 BGC1 FUC2 XYP3 RM44 7CV5 XXR6 MAN7 GLA8 XYP9
Unit 7 BGC1 FUC2 XXR3 MAN4 GLA5 XYP6 XYP7
Unit 8 BGC1 FUC2
Unit 9 BGC1 FUC2 XYP3 RM44 GLA5 XXR6 XYP7
Unit 10 BGC1 FUC2 XYP3 RM44 7CV5 XXR6 MAN7 GLA8 XYP9
Unit 11 BGC1 FUC2 XXR3 MAN4 GLA5 XYP6 XYP7
Unit 12 BGC1 FUC2
Unit 13 BGC1 FUC2 XXR3 MAN4 GLA5 XYP6 XYP7
Unit 14 BGC1 FUC2 XYP3 RM44 7CV5 XXR6 MAN7 GLA8 XYP9
Unit 15 BGC1 FUC2 XXR3 MAN4 GLA5 XYP6 XYP7
Unit 16 BGC1 FUC2 XXR3 MAN4 XYP5 RM46 GLA7 XYP8
Unit 17 BGC1 FUC2 XYP3 RM44 7CV5 XXR6 MAN7 GLA8 XYP9
Unit 18 BGC1 FUC2 XXR3 MAN4 GLA5 XYP6 XYP7
Unit 19 BGC1 FUC2
Unit 20 HG501
Unit 21 HG501
Unit 22 HG501 BGC525
Unit 23 HG501
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany