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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE DETERMINATION OF A POTENT, SELECTIVE ANTIBODY INHI HUMAN MMP9 (GS-5745 BOUND TO MMP-9)
Keywords METALLOPROTEINASE-9 ANTIBODY INHIBITOR, HYDROLASE-HYDROLASE COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5TH9     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GS-5745 FAB LIGHT CHAIN  L 214 1646 0
2  Protein   GS-5745 FAB HEAVY CHAIN  H 208 1579 0
3  Protein    A 222 1767 0
4  Protein   GS-5745 FAB LIGHT CHAIN  M 214 1646 0
5  Protein   GS-5745 FAB HEAVY CHAIN  I 208 1579 0
6  Protein    B 222 1767 0
7  Protein   GS-5745 FAB LIGHT CHAIN  N 106 810 0
8  Protein   GS-5745 FAB HEAVY CHAIN  J 106 839 0
9  Protein    C 217 1734 0
10  Ligand    A 5 0 11
11  Ligand    B 5 0 11
12  Ligand    C 5 0 11
13 Water     140 0 140
total       1872 13367 173

Proteins
Unit 1 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 LYS24 ALA25 SER26 GLN27 ASP28 VAL29 ARG30 ASN31 THR32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 SER51 SER52 TYR53 ARG54 ASN55 THR56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 ALA80 GLU81 ASP82 VAL83 ALA84 VAL85 TYR86 TYR87 CYS88 GLN89 GLN90 HIS91 TYR92 ILE93 THR94 PRO95 TYR96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 2 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 LEU30 SER31 TYR32 GLY33 VAL34 HIS35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 THR53 GLY54 GLY55 THR56 THR57 ASN58 TYR59 ASN60 SER61 ALA62 LEU63 MET64 SER65 ARG66 PHE67 THR68 ILE69 SER70 LYS71 ASP72 ASP73 SER74 LYS75 ASN76 THR77 VAL78 TYR79 LEU80 LYS81 MET82 ASN83 SER84 LEU85 LYS86 THR87 GLU88 ASP89 THR90 ALA91 ILE92 TYR93 TYR94 CYS95 ALA96 ARG97 TYR98 TYR99 TYR100 GLY101 MET102 ASP103 TYR104 TRP105 GLY106 GLN107 GLY108 THR109 LEU110 VAL111 THR112 VAL113 SER114 SER115 ALA116 SER117 THR118 LYS119 GLY120 PRO121 SER122 VAL123 PHE124 PRO125 LEU126 ALA127 PRO128 SER136 THR137 ALA138 ALA139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 ASP146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER155 TRP156 ASN157 SER158 GLY159 ALA160 LEU161 THR162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 SER175 GLY176 LEU177 TYR178 SER179 LEU180 SER181 SER182 VAL183 VAL184 THR185 VAL186 PRO187 SER188 SER189 SER190 LEU191 GLY192 THR193 LYS194 THR195 TYR196 THR197 CYS198 ASN199 VAL200 ASP201 HIS202 LYS203 PRO204 SER205 ASN206 THR207 LYS208 VAL209 ASP210 LYS211 ARG212 VAL213 GLU214 SER215
Unit 3 THR40 ASP41 ARG42 GLN43 LEU44 ALA45 GLU46 GLU47 TYR48 LEU49 TYR50 ARG51 TYR52 GLY53 TYR54 THR55 ARG56 VAL57 ALA58 SER66 LEU67 GLY68 PRO69 ALA70 LEU71 LEU72 LEU73 LEU74 GLN75 LYS76 GLN77 LEU78 SER79 LEU80 PRO81 GLU82 THR83 GLY84 GLU85 LEU86 ASP87 SER88 ALA89 THR90 LEU91 LYS92 ALA93 MET94 ARG95 THR96 PRO97 ARG98 CYS99 GLY100 VAL101 PRO102 ASP103 LEU104 GLY105 ARG106 PHE107 GLN108 THR109 PHE110 GLU111 GLY112 ASP113 LEU114 LYS115 TRP116 HIS117 HIS118 HIS119 ASN120 ILE121 THR122 TYR123 TRP124 ILE125 GLN126 ASN127 TYR128 SER129 GLU130 ASP131 LEU132 PRO133 ARG134 ALA135 VAL136 ILE137 ASP138 ASP139 ALA140 PHE141 ALA142 ARG143 ALA144 PHE145 ALA146 LEU147 TRP148 SER149 ALA150 VAL151 THR152 PRO153 LEU154 THR155 PHE156 THR157 ARG158 VAL159 TYR160 SER161 ARG162 ASP163 ALA164 ASP165 ILE166 VAL167 ILE168 GLN169 PHE170 GLY171 VAL172 ALA173 GLU174 HIS175 GLY176 ASP177 GLY178 TYR179 PRO180 PHE181 ASP182 GLY183 LYS184 ASP185 GLY186 LEU187 LEU188 ALA189 HIS190 ALA191 PHE192 PRO193 PRO194 GLY195 PRO196 GLY197 ILE198 GLN199 GLY200 ASP201 ALA202 HIS203 PHE204 ASP205 ASP206 ASP207 GLU208 LEU209 TRP210 SER211 LEU212 GLY213 LYS214 GLY215 GLN391 GLY392 TYR393 SER394 LEU395 PHE396 LEU397 VAL398 ALA399 ALA400 HIS401 GLU402 PHE403 GLY404 HIS405 ALA406 LEU407 GLY408 LEU409 ASP410 HIS411 SER412 SER413 VAL414 PRO415 GLU416 ALA417 LEU418 MET419 TYR420 PRO421 MET422 TYR423 ARG424 PHE425 THR426 GLU427 GLY428 PRO429 PRO430 LEU431 HIS432 LYS433 ASP434 ASP435 VAL436 ASN437 GLY438 ILE439 ARG440 HIS441 LEU442 TYR443
Unit 4 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 LYS24 ALA25 SER26 GLN27 ASP28 VAL29 ARG30 ASN31 THR32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 SER51 SER52 TYR53 ARG54 ASN55 THR56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 ALA80 GLU81 ASP82 VAL83 ALA84 VAL85 TYR86 TYR87 CYS88 GLN89 GLN90 HIS91 TYR92 ILE93 THR94 PRO95 TYR96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 5 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 LEU30 SER31 TYR32 GLY33 VAL34 HIS35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 THR53 GLY54 GLY55 THR56 THR57 ASN58 TYR59 ASN60 SER61 ALA62 LEU63 MET64 SER65 ARG66 PHE67 THR68 ILE69 SER70 LYS71 ASP72 ASP73 SER74 LYS75 ASN76 THR77 VAL78 TYR79 LEU80 LYS81 MET82 ASN83 SER84 LEU85 LYS86 THR87 GLU88 ASP89 THR90 ALA91 ILE92 TYR93 TYR94 CYS95 ALA96 ARG97 TYR98 TYR99 TYR100 GLY101 MET102 ASP103 TYR104 TRP105 GLY106 GLN107 GLY108 THR109 LEU110 VAL111 THR112 VAL113 SER114 SER115 ALA116 SER117 THR118 LYS119 GLY120 PRO121 SER122 VAL123 PHE124 PRO125 LEU126 ALA127 PRO128 SER136 THR137 ALA138 ALA139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 ASP146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER155 TRP156 ASN157 SER158 GLY159 ALA160 LEU161 THR162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 SER175 GLY176 LEU177 TYR178 SER179 LEU180 SER181 SER182 VAL183 VAL184 THR185 VAL186 PRO187 SER188 SER189 SER190 LEU191 GLY192 THR193 LYS194 THR195 TYR196 THR197 CYS198 ASN199 VAL200 ASP201 HIS202 LYS203 PRO204 SER205 ASN206 THR207 LYS208 VAL209 ASP210 LYS211 ARG212 VAL213 GLU214 SER215
Unit 6 THR40 ASP41 ARG42 GLN43 LEU44 ALA45 GLU46 GLU47 TYR48 LEU49 TYR50 ARG51 TYR52 GLY53 TYR54 THR55 ARG56 VAL57 ALA58 SER66 LEU67 GLY68 PRO69 ALA70 LEU71 LEU72 LEU73 LEU74 GLN75 LYS76 GLN77 LEU78 SER79 LEU80 PRO81 GLU82 THR83 GLY84 GLU85 LEU86 ASP87 SER88 ALA89 THR90 LEU91 LYS92 ALA93 MET94 ARG95 THR96 PRO97 ARG98 CYS99 GLY100 VAL101 PRO102 ASP103 LEU104 GLY105 ARG106 PHE107 GLN108 THR109 PHE110 GLU111 GLY112 ASP113 LEU114 LYS115 TRP116 HIS117 HIS118 HIS119 ASN120 ILE121 THR122 TYR123 TRP124 ILE125 GLN126 ASN127 TYR128 SER129 GLU130 ASP131 LEU132 PRO133 ARG134 ALA135 VAL136 ILE137 ASP138 ASP139 ALA140 PHE141 ALA142 ARG143 ALA144 PHE145 ALA146 LEU147 TRP148 SER149 ALA150 VAL151 THR152 PRO153 LEU154 THR155 PHE156 THR157 ARG158 VAL159 TYR160 SER161 ARG162 ASP163 ALA164 ASP165 ILE166 VAL167 ILE168 GLN169 PHE170 GLY171 VAL172 ALA173 GLU174 HIS175 GLY176 ASP177 GLY178 TYR179 PRO180 PHE181 ASP182 GLY183 LYS184 ASP185 GLY186 LEU187 LEU188 ALA189 HIS190 ALA191 PHE192 PRO193 PRO194 GLY195 PRO196 GLY197 ILE198 GLN199 GLY200 ASP201 ALA202 HIS203 PHE204 ASP205 ASP206 ASP207 GLU208 LEU209 TRP210 SER211 LEU212 GLY213 LYS214 GLY215 GLN391 GLY392 TYR393 SER394 LEU395 PHE396 LEU397 VAL398 ALA399 ALA400 HIS401 GLU402 PHE403 GLY404 HIS405 ALA406 LEU407 GLY408 LEU409 ASP410 HIS411 SER412 SER413 VAL414 PRO415 GLU416 ALA417 LEU418 MET419 TYR420 PRO421 MET422 TYR423 ARG424 PHE425 THR426 GLU427 GLY428 PRO429 PRO430 LEU431 HIS432 LYS433 ASP434 ASP435 VAL436 ASN437 GLY438 ILE439 ARG440 HIS441 LEU442 TYR443
Unit 7 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 LYS24 ALA25 SER26 GLN27 ASP28 VAL29 ARG30 ASN31 THR32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 SER51 SER52 TYR53 ARG54 ASN55 THR56 GLY57 VAL58 PRO59 ASP60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 ALA80 GLU81 ASP82 VAL83 ALA84 VAL85 TYR86 TYR87 CYS88 GLN89 GLN90 HIS91 TYR92 ILE93 THR94 PRO95 TYR96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106
Unit 8 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 LEU30 SER31 TYR32 GLY33 VAL34 HIS35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 THR53 GLY54 GLY55 THR56 THR57 ASN58 TYR59 ASN60 SER61 ALA62 LEU63 MET64 SER65 ARG66 PHE67 THR68 ILE69 SER70 LYS71 ASP72 ASP73 SER74 LYS75 ASN76 THR77 VAL78 TYR79 LEU80 LYS81 MET82 ASN83 SER84 LEU85 LYS86 THR87 GLU88 ASP89 THR90 ALA91 ILE92 TYR93 TYR94 CYS95 ALA96 ARG97 TYR98 TYR99 TYR100 GLY101 MET102 ASP103 TYR104 TRP105 GLY106
Unit 9 ASP41 ARG42 GLN43 LEU44 ALA45 GLU46 GLU47 TYR48 LEU49 TYR50 ARG51 TYR52 GLY53 TYR54 THR55 ARG56 GLY68 PRO69 ALA70 LEU71 LEU72 LEU73 LEU74 GLN75 LYS76 GLN77 LEU78 SER79 LEU80 PRO81 GLU82 THR83 GLY84 GLU85 LEU86 ASP87 SER88 ALA89 THR90 LEU91 LYS92 ALA93 MET94 ARG95 THR96 PRO97 ARG98 CYS99 GLY100 VAL101 PRO102 ASP103 LEU104 GLY105 ARG106 PHE107 GLN108 THR109 PHE110 GLU111 GLY112 ASP113 LEU114 LYS115 TRP116 HIS117 HIS118 HIS119 ASN120 ILE121 THR122 TYR123 TRP124 ILE125 GLN126 ASN127 TYR128 SER129 GLU130 ASP131 LEU132 PRO133 ARG134 ALA135 VAL136 ILE137 ASP138 ASP139 ALA140 PHE141 ALA142 ARG143 ALA144 PHE145 ALA146 LEU147 TRP148 SER149 ALA150 VAL151 THR152 PRO153 LEU154 THR155 PHE156 THR157 ARG158 VAL159 TYR160 SER161 ARG162 ASP163 ALA164 ASP165 ILE166 VAL167 ILE168 GLN169 PHE170 GLY171 VAL172 ALA173 GLU174 HIS175 GLY176 ASP177 GLY178 TYR179 PRO180 PHE181 ASP182 GLY183 LYS184 ASP185 GLY186 LEU187 LEU188 ALA189 HIS190 ALA191 PHE192 PRO193 PRO194 GLY195 PRO196 GLY197 ILE198 GLN199 GLY200 ASP201 ALA202 HIS203 PHE204 ASP205 ASP206 ASP207 GLU208 LEU209 TRP210 SER211 LEU212 GLY213 LYS214 GLY215 GLN391 GLY392 TYR393 SER394 LEU395 PHE396 LEU397 VAL398 ALA399 ALA400 HIS401 GLU402 PHE403 GLY404 HIS405 ALA406 LEU407 GLY408 LEU409 ASP410 HIS411 SER412 SER413 VAL414 PRO415 GLU416 ALA417 LEU418 MET419 TYR420 PRO421 MET422 TYR423 ARG424 PHE425 THR426 GLU427 GLY428 PRO429 PRO430 LEU431 HIS432 LYS433 ASP434 ASP435 VAL436 ASN437 GLY438 ILE439 ARG440 HIS441 LEU442 TYR443

Ligands
Unit 10 ZN501 ZN502 CA503 CA504 NCO505
Unit 11 ZN501 ZN502 CA503 CA504 NCO505
Unit 12 ZN501 ZN502 CA503 CA504 NCO505

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany