5TH3 - Sequence, Chains, Asymmetric and Biological Units

• Title: RESTRICTION/MODIFICATION SYSTEM-TYPE II R.SWAI CLEAVED DNA C
• Keywords: I-SWAI, CLEAVED DNA COMPLEX, R/M SYSTEM, DNA BINDING PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5TH3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	R-SWAI PROTEIN	A	226	1854	40
2	Protein	R-SWAI PROTEIN	B	226	1854	40
3	Protein	R-SWAI PROTEIN	C	226	1854	40
4	Protein	R-SWAI PROTEIN	D	226	1854	40
5	Other macromolecule	DNA (CLEAVED 25-MER, PORTION 1)	H	12	250	0
6	Other macromolecule	DNA (CLEAVED 25-MER, PORTION 2)	h	13	270	0
7	Other macromolecule	DNA (CLEAVED 26-MER, PORTION 1)	I	14	280	0
8	Other macromolecule	DNA (CLEAVED 26-MER, PORTION 2)	i	12	243	0
9	Other macromolecule	DNA (CLEAVED 25-MER, PORTION 1)	J	14	291	0
10	Other macromolecule	DNA (CLEAVED 25-MER, PORTION 2)	j	13	270	0
11	Other macromolecule	DNA (CLEAVED 26-MER, PORTION 1)	K	13	261	0
12	Other macromolecule	DNA (CLEAVED 26-MER, PORTION 2)	k	13	262	0
13	Ligand	R-SWAI PROTEIN	A	3	0	6
14	Ligand	R-SWAI PROTEIN	B	2	0	5
15	Ligand	R-SWAI PROTEIN	C	1	0	1
16	Ligand	R-SWAI PROTEIN	D	3	0	6
17	Ligand	DNA (CLEAVED 26-MER, PORTION 1)	I	1	0	4
18	Water			133	0	133
total				1151	9543	315

Proteins

Unit 1	MSE 1 ASN 2 PHE 3 LYS 4 LYS 5 TYR 6 GLU 7 GLU 8 ASN 9 LEU 10 VAL 11 ALA 12 SER 13 ILE 14 GLU 15 GLU 16 VAL 17 ILE 18 GLN 19 ARG 20 ILE 21 ILE 22 ASP 23 ASP 24 LYS 25 HIS 26 ARG 27 PRO 28 ASN 29 ILE 30 ILE 31 GLY 32 LYS 33 THR 34 ARG 35 VAL 36 GLY 37 ALA 38 GLU 39 VAL 40 SER 41 ASP 42 TYR 43 LEU 44 GLU 45 ASP 46 GLU 47 PHE 48 VAL 49 LYS 50 TYR 51 ILE 52 SER 53 SER 54 GLY 55 LYS 56 SER 57 SER 58 SER 59 LEU 60 TYR 61 ASP 62 ALA 63 GLN 64 GLY 65 ALA 66 PRO 67 LYS 68 GLU 69 LYS 70 THR 71 LYS 72 ASN 73 PRO 74 TRP 75 ASP 76 ALA 77 ARG 78 CYS 79 LYS 80 PHE 81 LYS 82 PHE 83 MSE 84 ASP 85 ARG 86 GLU 87 GLU 88 GLU 89 ILE 90 TRP 91 ILE 92 ASP 93 PHE 94 LYS 95 ALA 96 PHE 97 LYS 98 ILE 99 THR 100 ASN 101 MSE 102 ASP 103 SER 104 ASN 105 PRO 106 ASP 107 ILE 108 GLY 109 THR 110 PRO 111 ASN 112 LYS 113 ILE 114 VAL 115 LYS 116 PHE 117 ILE 118 HIS 119 GLU 120 GLY 121 ASN 122 PHE 123 TYR 124 LEU 125 VAL 126 PHE 127 VAL 128 LEU 129 VAL 130 TYR 131 TYR 132 GLU 133 SER 134 LYS 135 GLN 136 ASP 137 GLY 138 VAL 139 GLU 140 PHE 141 VAL 142 LYS 143 TYR 144 ASN 145 ASN 146 ASP 147 TYR 148 LYS 149 LYS 150 VAL 151 TYR 152 LEU 153 LEU 154 LYS 155 ASP 156 VAL 157 ASN 158 GLU 159 SER 160 PHE 161 ARG 162 ILE 163 ASN 164 PRO 165 LYS 166 PRO 167 GLN 168 MSE 169 GLN 170 VAL 171 ASN 172 ILE 173 ALA 174 ALA 175 GLU 176 PRO 177 THR 178 TYR 179 ARG 180 THR 181 ARG 182 GLU 183 GLU 184 PHE 185 ILE 186 HIS 187 PHE 188 PHE 189 VAL 190 LYS 191 LYS 192 TRP 193 LYS 194 GLU 195 SER 196 PHE 197 GLU 198 ARG 199 GLN 200 ILE 201 LYS 202 SER 203 LEU 204 GLU 205 LYS 206 LYS 207 GLU 208 ILE 209 MSE 210 LEU 211 LYS 212 ASP 213 LEU 214 GLU 215 ASP 216 LYS 217 LEU 218 LYS 219 ASN 220 SER 221 ASN 222 ASP 223 ASN 224 SER 225 ILE 226
Unit 2	MSE 1 ASN 2 PHE 3 LYS 4 LYS 5 TYR 6 GLU 7 GLU 8 ASN 9 LEU 10 VAL 11 ALA 12 SER 13 ILE 14 GLU 15 GLU 16 VAL 17 ILE 18 GLN 19 ARG 20 ILE 21 ILE 22 ASP 23 ASP 24 LYS 25 HIS 26 ARG 27 PRO 28 ASN 29 ILE 30 ILE 31 GLY 32 LYS 33 THR 34 ARG 35 VAL 36 GLY 37 ALA 38 GLU 39 VAL 40 SER 41 ASP 42 TYR 43 LEU 44 GLU 45 ASP 46 GLU 47 PHE 48 VAL 49 LYS 50 TYR 51 ILE 52 SER 53 SER 54 GLY 55 LYS 56 SER 57 SER 58 SER 59 LEU 60 TYR 61 ASP 62 ALA 63 GLN 64 GLY 65 ALA 66 PRO 67 LYS 68 GLU 69 LYS 70 THR 71 LYS 72 ASN 73 PRO 74 TRP 75 ASP 76 ALA 77 ARG 78 CYS 79 LYS 80 PHE 81 LYS 82 PHE 83 MSE 84 ASP 85 ARG 86 GLU 87 GLU 88 GLU 89 ILE 90 TRP 91 ILE 92 ASP 93 PHE 94 LYS 95 ALA 96 PHE 97 LYS 98 ILE 99 THR 100 ASN 101 MSE 102 ASP 103 SER 104 ASN 105 PRO 106 ASP 107 ILE 108 GLY 109 THR 110 PRO 111 ASN 112 LYS 113 ILE 114 VAL 115 LYS 116 PHE 117 ILE 118 HIS 119 GLU 120 GLY 121 ASN 122 PHE 123 TYR 124 LEU 125 VAL 126 PHE 127 VAL 128 LEU 129 VAL 130 TYR 131 TYR 132 GLU 133 SER 134 LYS 135 GLN 136 ASP 137 GLY 138 VAL 139 GLU 140 PHE 141 VAL 142 LYS 143 TYR 144 ASN 145 ASN 146 ASP 147 TYR 148 LYS 149 LYS 150 VAL 151 TYR 152 LEU 153 LEU 154 LYS 155 ASP 156 VAL 157 ASN 158 GLU 159 SER 160 PHE 161 ARG 162 ILE 163 ASN 164 PRO 165 LYS 166 PRO 167 GLN 168 MSE 169 GLN 170 VAL 171 ASN 172 ILE 173 ALA 174 ALA 175 GLU 176 PRO 177 THR 178 TYR 179 ARG 180 THR 181 ARG 182 GLU 183 GLU 184 PHE 185 ILE 186 HIS 187 PHE 188 PHE 189 VAL 190 LYS 191 LYS 192 TRP 193 LYS 194 GLU 195 SER 196 PHE 197 GLU 198 ARG 199 GLN 200 ILE 201 LYS 202 SER 203 LEU 204 GLU 205 LYS 206 LYS 207 GLU 208 ILE 209 MSE 210 LEU 211 LYS 212 ASP 213 LEU 214 GLU 215 ASP 216 LYS 217 LEU 218 LYS 219 ASN 220 SER 221 ASN 222 ASP 223 ASN 224 SER 225 ILE 226
Unit 3	MSE 1 ASN 2 PHE 3 LYS 4 LYS 5 TYR 6 GLU 7 GLU 8 ASN 9 LEU 10 VAL 11 ALA 12 SER 13 ILE 14 GLU 15 GLU 16 VAL 17 ILE 18 GLN 19 ARG 20 ILE 21 ILE 22 ASP 23 ASP 24 LYS 25 HIS 26 ARG 27 PRO 28 ASN 29 ILE 30 ILE 31 GLY 32 LYS 33 THR 34 ARG 35 VAL 36 GLY 37 ALA 38 GLU 39 VAL 40 SER 41 ASP 42 TYR 43 LEU 44 GLU 45 ASP 46 GLU 47 PHE 48 VAL 49 LYS 50 TYR 51 ILE 52 SER 53 SER 54 GLY 55 LYS 56 SER 57 SER 58 SER 59 LEU 60 TYR 61 ASP 62 ALA 63 GLN 64 GLY 65 ALA 66 PRO 67 LYS 68 GLU 69 LYS 70 THR 71 LYS 72 ASN 73 PRO 74 TRP 75 ASP 76 ALA 77 ARG 78 CYS 79 LYS 80 PHE 81 LYS 82 PHE 83 MSE 84 ASP 85 ARG 86 GLU 87 GLU 88 GLU 89 ILE 90 TRP 91 ILE 92 ASP 93 PHE 94 LYS 95 ALA 96 PHE 97 LYS 98 ILE 99 THR 100 ASN 101 MSE 102 ASP 103 SER 104 ASN 105 PRO 106 ASP 107 ILE 108 GLY 109 THR 110 PRO 111 ASN 112 LYS 113 ILE 114 VAL 115 LYS 116 PHE 117 ILE 118 HIS 119 GLU 120 GLY 121 ASN 122 PHE 123 TYR 124 LEU 125 VAL 126 PHE 127 VAL 128 LEU 129 VAL 130 TYR 131 TYR 132 GLU 133 SER 134 LYS 135 GLN 136 ASP 137 GLY 138 VAL 139 GLU 140 PHE 141 VAL 142 LYS 143 TYR 144 ASN 145 ASN 146 ASP 147 TYR 148 LYS 149 LYS 150 VAL 151 TYR 152 LEU 153 LEU 154 LYS 155 ASP 156 VAL 157 ASN 158 GLU 159 SER 160 PHE 161 ARG 162 ILE 163 ASN 164 PRO 165 LYS 166 PRO 167 GLN 168 MSE 169 GLN 170 VAL 171 ASN 172 ILE 173 ALA 174 ALA 175 GLU 176 PRO 177 THR 178 TYR 179 ARG 180 THR 181 ARG 182 GLU 183 GLU 184 PHE 185 ILE 186 HIS 187 PHE 188 PHE 189 VAL 190 LYS 191 LYS 192 TRP 193 LYS 194 GLU 195 SER 196 PHE 197 GLU 198 ARG 199 GLN 200 ILE 201 LYS 202 SER 203 LEU 204 GLU 205 LYS 206 LYS 207 GLU 208 ILE 209 MSE 210 LEU 211 LYS 212 ASP 213 LEU 214 GLU 215 ASP 216 LYS 217 LEU 218 LYS 219 ASN 220 SER 221 ASN 222 ASP 223 ASN 224 SER 225 ILE 226
Unit 4	MSE 1 ASN 2 PHE 3 LYS 4 LYS 5 TYR 6 GLU 7 GLU 8 ASN 9 LEU 10 VAL 11 ALA 12 SER 13 ILE 14 GLU 15 GLU 16 VAL 17 ILE 18 GLN 19 ARG 20 ILE 21 ILE 22 ASP 23 ASP 24 LYS 25 HIS 26 ARG 27 PRO 28 ASN 29 ILE 30 ILE 31 GLY 32 LYS 33 THR 34 ARG 35 VAL 36 GLY 37 ALA 38 GLU 39 VAL 40 SER 41 ASP 42 TYR 43 LEU 44 GLU 45 ASP 46 GLU 47 PHE 48 VAL 49 LYS 50 TYR 51 ILE 52 SER 53 SER 54 GLY 55 LYS 56 SER 57 SER 58 SER 59 LEU 60 TYR 61 ASP 62 ALA 63 GLN 64 GLY 65 ALA 66 PRO 67 LYS 68 GLU 69 LYS 70 THR 71 LYS 72 ASN 73 PRO 74 TRP 75 ASP 76 ALA 77 ARG 78 CYS 79 LYS 80 PHE 81 LYS 82 PHE 83 MSE 84 ASP 85 ARG 86 GLU 87 GLU 88 GLU 89 ILE 90 TRP 91 ILE 92 ASP 93 PHE 94 LYS 95 ALA 96 PHE 97 LYS 98 ILE 99 THR 100 ASN 101 MSE 102 ASP 103 SER 104 ASN 105 PRO 106 ASP 107 ILE 108 GLY 109 THR 110 PRO 111 ASN 112 LYS 113 ILE 114 VAL 115 LYS 116 PHE 117 ILE 118 HIS 119 GLU 120 GLY 121 ASN 122 PHE 123 TYR 124 LEU 125 VAL 126 PHE 127 VAL 128 LEU 129 VAL 130 TYR 131 TYR 132 GLU 133 SER 134 LYS 135 GLN 136 ASP 137 GLY 138 VAL 139 GLU 140 PHE 141 VAL 142 LYS 143 TYR 144 ASN 145 ASN 146 ASP 147 TYR 148 LYS 149 LYS 150 VAL 151 TYR 152 LEU 153 LEU 154 LYS 155 ASP 156 VAL 157 ASN 158 GLU 159 SER 160 PHE 161 ARG 162 ILE 163 ASN 164 PRO 165 LYS 166 PRO 167 GLN 168 MSE 169 GLN 170 VAL 171 ASN 172 ILE 173 ALA 174 ALA 175 GLU 176 PRO 177 THR 178 TYR 179 ARG 180 THR 181 ARG 182 GLU 183 GLU 184 PHE 185 ILE 186 HIS 187 PHE 188 PHE 189 VAL 190 LYS 191 LYS 192 TRP 193 LYS 194 GLU 195 SER 196 PHE 197 GLU 198 ARG 199 GLN 200 ILE 201 LYS 202 SER 203 LEU 204 GLU 205 LYS 206 LYS 207 GLU 208 ILE 209 MSE 210 LEU 211 LYS 212 ASP 213 LEU 214 GLU 215 ASP 216 LYS 217 LEU 218 LYS 219 ASN 220 SER 221 ASN 222 ASP 223 ASN 224 SER 225 ILE 226

Other macromolecules

Unit 5	DG 3 DC 4 DG 5 DG 6 DA 7 DG 8 DG 9 DC 10 DA 11 DT 12 DT 13 DT 14
Unit 6	DA 25 DA 26 DA 27 DT 28 DG 29 DC 30 DC 31 DG 32 DC 33 DG 34 DC 35 DG 36 DG 37
Unit 7	DC 1 DC 2 DC 3 DG 4 DC 5 DG 6 DC 7 DG 8 DG 9 DC 10 DA 11 DT 12 DT 13 DT 14
Unit 8	DA 25 DA 26 DA 27 DT 28 DG 29 DC 30 DC 31 DT 32 DC 33 DC 34 DG 35 DC 36
Unit 9	DG 1 DG 2 DG 3 DC 4 DG 5 DG 6 DA 7 DG 8 DG 9 DC 10 DA 11 DT 12 DT 13 DT 14
Unit 10	DA 25 DA 26 DA 27 DT 28 DG 29 DC 30 DC 31 DG 32 DC 33 DG 34 DC 35 DG 36 DG 37
Unit 11	DC 2 DC 3 DG 4 DC 5 DG 6 DC 7 DG 8 DG 9 DC 10 DA 11 DT 12 DT 13 DT 14
Unit 12	DA 25 DA 26 DA 27 DT 28 DG 29 DC 30 DC 31 DT 32 DC 33 DC 34 DG 35 DC 36 DC 37

Ligands

Unit 13	MG 301 MG 302 EDO 303
Unit 14	MG 301 ACT 302
Unit 15	MG 301
Unit 16	MG 301 MG 302 EDO 303
Unit 17	EDO 101