5TE7 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING VRC01-CLASS ANTIBO COMPLEX WITH HIV-1 CLADE C STRAIN DU172.17 GP120 CORE
• Keywords: HIV-1, VRC01-CLASS ANTIBODY, N6, CD4-BINDING SITE, GP120, IM SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5TE7	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HEAVY CHAIN OF N6	H	225	3347	0
2	Protein	LIGHT CHAIN OF N6	L	210	3193	0
3	Protein	HIV-1 GP120 CORE	G	336	4787	0
4	Ligand	HEAVY CHAIN OF N6	H	3	0	52
5	Ligand	LIGHT CHAIN OF N6	L	4	0	58
6	Ligand	HIV-1 GP120 CORE	G	10	0	241
7	Water			315	0	315
total				1103	11327	666

Proteins

Unit 1	ARG 1 ALA 2 HIS 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 THR 9 ALA 10 MET 11 LYS 12 LYS 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 ARG 19 VAL 20 SER 21 CYS 22 GLN 23 THR 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 ALA 31 HIS 32 ILE 33 LEU 34 PHE 35 TRP 36 PHE 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 ARG 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 GLY 49 TRP 50 ILE 51 LYS 52 PRO 52A GLN 53 TYR 54 GLY 55 ALA 56 VAL 57 ASN 58 PHE 59 GLY 60 GLY 61 GLY 62 PHE 63 ARG 64 ASP 65 ARG 66 VAL 67 THR 68 LEU 69 THR 70 ARG 71 ASP 72 VAL 73 TYR 74 ARG 75 GLU 76 ILE 77 ALA 78 TYR 79 MET 80 ASP 81 ILE 82 ARG 82A GLY 82B LEU 82C LYS 83 PRO 84 ASP 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 ASP 95 ARG 96 SER 97 TYR 98 GLY 99 ASP 100 SER 100A SER 100B TRP 100C ALA 100D LEU 100E ASP 101 ALA 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 VAL 109 VAL 110 VAL 111 SER 112 ALA 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 LYS 129 SER 130 THR 131 SER 132 GLY 133 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213 LYS 214 SER 215 CYS 216
Unit 2	TYR 1 ILE 2 HIS 3 VAL 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 VAL 13 SER 14 ILE 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 ASN 22 CYS 23 GLN 24 THR 25 SER 26 GLN 27 GLY 28 VAL 29 GLY 30 SER 31 ASP 32 LEU 33 HIS 34 TRP 35 TYR 36 GLN 37 HIS 38 LYS 39 PRO 40 GLY 41 ARG 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 HIS 49 HIS 50 THR 51 SER 52 SER 53 VAL 54 GLU 55 ASP 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 PHE 67 HIS 68 THR 69 SER 70 PHE 71 ASN 72 LEU 73 THR 74 ILE 75 SER 76 ASP 77 LEU 78 GLN 79 ALA 80 ASP 81 ASP 82 ILE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 VAL 90 LEU 91 GLN 96 PHE 97 PHE 98 GLY 99 ARG 100 GLY 101 SER 102 ARG 103 LEU 104 HIS 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212 GLU 213 CYS 214
Unit 3	TRP 45 LYS 46 GLU 47 ALA 48 LYS 49 THR 50 THR 51 LEU 52 PHE 53 CYS 54 ALA 55 SER 56 ASP 57 ALA 58 LYS 59 ALA 60 HIS 61 LYS 62 GLU 63 GLU 64 VAL 65 HIS 66 ASN 67 ILE 68 TRP 69 ALA 70 THR 71 HIS 72 ALA 73 CYS 74 VAL 75 PRO 76 THR 77 ASP 78 PRO 79 ASN 80 PRO 81 GLN 82 GLU 83 ILE 84 VAL 85 LEU 86 LYS 87 ASN 88 VAL 89 THR 90 GLU 91 ASN 92 PHE 93 ASN 94 MET 95 TRP 96 LYS 97 ASN 98 ASP 99 MET 100 VAL 101 ASP 102 GLN 103 MET 104 HIS 105 GLU 106 ASP 107 ILE 108 ILE 109 SER 110 LEU 111 TRP 112 ASP 113 GLN 114 SER 115 LEU 116 LYS 117 PRO 118 CYS 119 VAL 120 LYS 121 LEU 122 THR 123 GLY 124 GLY 198 SER 199 ALA 200 VAL 201 THR 202 GLN 203 ALA 204 CYS 205 PRO 206 LYS 207 VAL 208 SER 209 PHE 210 ASP 211 PRO 212 ILE 213 PRO 214 ILE 215 HIS 216 TYR 217 CYS 218 ALA 219 PRO 220 ALA 221 GLY 222 TYR 223 ALA 224 ILE 225 LEU 226 LYS 227 CYS 228 ASN 229 ASN 230 LYS 231 THR 232 PHE 233 ASN 234 GLY 235 THR 236 GLY 237 PRO 238 CYS 239 ASN 240 ASN 241 VAL 242 SER 243 THR 244 VAL 245 GLN 246 CYS 247 THR 248 HIS 249 GLY 250 ILE 251 LYS 252 PRO 253 VAL 254 VAL 255 SER 256 THR 257 GLN 258 LEU 259 LEU 260 LEU 261 ASN 262 GLY 263 SER 264 LEU 265 ALA 266 GLU 267 GLU 268 GLU 269 VAL 270 VAL 271 ILE 272 ARG 273 PHE 274 GLU 275 ASN 276 LEU 277 THR 278 ASN 279 ASN 280 ALA 281 LYS 282 ILE 283 ILE 284 ILE 285 VAL 286 HIS 287 LEU 288 ASN 289 GLU 290 SER 291 VAL 292 GLU 293 ILE 294 ASN 295 CYS 296 THR 297 ARG 298 PRO 299 SER 300 ASN 301 ASP 325 ILE 326 ARG 327 GLN 328 ALA 329 HIS 330 CYS 331 ASN 332 ILE 333 SER 334 ARG 335 LYS 336 LYS 337 TRP 338 ASN 339 THR 340 THR 341 LEU 342 GLN 343 ARG 344 VAL 345 LYS 346 GLU 347 LYS 348 LEU 349 LYS 350 GLU 351 LYS 352 PHE 353 PRO 354 ASN 355 LYS 357 THR 358 ILE 359 GLN 360 PHE 361 ALA 362 PRO 363 SER 364 SER 365 GLY 366 GLY 367 ASP 368 LEU 369 GLU 370 ILE 371 THR 372 THR 373 HIS 374 SER 375 PHE 376 ASN 377 CYS 378 ARG 379 GLY 380 GLU 381 PHE 382 PHE 383 TYR 384 CYS 385 TYR 386 THR 387 SER 388 ASP 389 LEU 390 PHE 391 ASN 392 SER 393 THR 394 TYR 395 MET 396 GLY 410 GLY 411 ALA 412 ASN 413 ILE 414 THR 415 LEU 416 GLN 417 CYS 418 ARG 419 ILE 420 LYS 421 GLN 422 ILE 423 ILE 424 ARG 425 MET 426 TRP 427 GLN 428 GLY 429 VAL 430 GLY 431 GLN 432 ALA 433 MET 434 TYR 435 ALA 436 PRO 437 PRO 438 ILE 439 ALA 440 GLY 441 ASN 442 ILE 443 THR 444 CYS 445 LYS 446 SER 447 ASN 448 ILE 449 THR 450 GLY 451 LEU 452 LEU 453 LEU 454 THR 455 ARG 456 ASP 457 GLY 458 GLY 459 LYS 460 LYS 462 ASN 463 ASP 464 THR 465 GLU 466 THR 467 PHE 468 ARG 469 PRO 470 GLY 471 GLY 472 GLY 473 ASP 474 MET 475 ARG 476 ASP 477 ASN 478 TRP 479 ARG 480 SER 481 GLU 482 LEU 483 TYR 484 LYS 485 TYR 486 LYS 487 VAL 488 VAL 489 GLU 490 ILE 491

Ligands

Unit 4	EPE 301 EDO 302 EDO 303
Unit 5	NAG 301 EDO 302 EDO 303 EDO 304
Unit 6	NAG 501 NAG 502 NAG 503 NAG 504 NAG 505 NAG 506 NAG 507 EPE 508 EDO 509 EDO 510